EsuBft1125_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1125_10a-0001
Unique NameEsuBft1125_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_133contigScaffold_133:606579..608682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog4530.OS08T0125300-01
ProteomeIdEsuBft1125_10
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsPR01217
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsPTHR11439
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsIPR001584
Protein domainsSIGNAL_PEPTIDE
Protein domainsIPR012337
Protein domainsTRANSMEMBRANE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl35493|Streptophyta
Length1944
Hectar predicted targeting categoryother localisation
Evalue3.85e-19
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M5VU@4447|Liliopsida,3IIIB@38820|Poales
Date last modified2016-06-13
Date creation2016-06-13
Descriptiongag-polypeptide of LTR copia-type
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0003824
GO0015074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1125_10aEsuBft1125_10aEctocarpus subulatus male Bft15bgeneScaffold_133 606579..608682 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1125_10a-0001-exonEsuBft1125_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_133 606579..608477 -
EsuBft1125_10a-0001-exonagat-exon-7909Ectocarpus subulatus male Bft15bexonScaffold_133 608638..608682 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1125_10a-0001-cdsEsuBft1125_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_133 606579..608477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1125_10a-0001EsuBft1125_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_133 606579..608682 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1125_10a-0001 ID=EsuBft1125_10a-0001|Name=EsuBft1125_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1944bp|location=Sequence derived from alignment at Scaffold_133:606579..608682- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCGATGATGTTGCTTTCGCTGTCCCCGTCATGGCCCCGGGCGAA
GGGGAAGAAGGCGGGCGTGCCTCACCAATCGGGCACGCGCGCGGAGCGGC
CGCACGATCTTTGGCATACCGATATGCGTGGGCCGATGACCGCCTCGCTG
GGGGGGTCGTTGTTCATGATCATGTTCGTAGACAGCTTCTCGCGGTGGAT
GAAGCTGAGGCGCAAGTCGGACACCCTCGCCTTCGTCAAGAAGTTCCTCG
CCGACATGAGTGGCACCGGTGTCCCTCGTTCTTTCCGGATGGACAACGGG
GGGGAGTTCGTCAGCCGCGACTTCATCGCCTTCTGCGACAACTCCGGCAT
CTGCCGTACGTACACGGCGCCGGGCACCCCGCAGCAGAATGGTCCGGCGG
AGAGTGCGATCTGGCGCGTGAAAAAGGCCGGCCACGCCGCTCGTCTCGAG
GCACGCCGCCTGTTCCTCAAGATCGACTTCACCCGCGTCCCCGGCGTCGG
ACGCGATGGCGAGCGACTTTGGCTGGAGTCGTGTCACTGGGCTGCCGGCG
GCTTCAACCGTTCTCCGACCAAGGCAAACGTCGGGTACAAGTCGCCGCAC
GAGTTCTCCACCGGCCGCCCGCCCCCGCTCCAGATCGTCCCGTTCTTACA
GCCGGGGTATATGCGTGTTATGCGCGCGCGGAAGATGGATCCCAATGCAG
TGCTGTGCTGCTACCTCAACAACGGCGACAACCATCACGAGTCGGCGGTC
AAGGTCCTCAAGTTCGCGACGGGGCGCGTGTGCATGACGAACAACGTCGT
GTGGGTCTCCGACCGCGCGCCGTTGCTGACCCCGCCGCTGGAGATGCCGG
CGCCGGCGGGCGAGGGGGGGGATTCGGATGTCGCCGCCGCATCGTTTTTA
ATAGAGTACATTTCACCGCCTCTGTTACCCCCCTCACCGTTCGCCCGATA
TCCCACTTCACCCGCTGCCATATCCTCACAGGCGCCGCCGGCAACTTCCA
CACCACCATCGCCGTCGCCGCCGTCTACCGCAGCAACACCATCGCCACCG
GTCACCGCGCCGCCTGCGACCCCACCGTACACCACCACCGCGCCACGTGC
AACGCCGCTCGCCGCCGCGCCACCGTTCACCACCACCGCGCCGCCTGCAA
CGCCGCTCGCCGCCGCGCCACCGTTCACCACCACCGCGCCGCCTGCAACG
CCGTTTGCCGTCGTGCCACCGCCTCCCGCCGTCGTGCCGCCCGGTGCCGC
GCCATCGACCAACATGCCGCCGCTCACTACGAGGACCATCCGTGAACTGG
ACGTGGGGCGCGGGGACATGAGGGTTTCCGGGCGCACGAGGGCAGCCGCT
AAGGACCAAGTGGGGGGGCGGGCGTCGTCAATGCCGCCCCTCTCTGCCAG
GGCCAATCGAGAGCTGGACTTGGGACGAGAGACGCGGGTGCCAGGGAGGT
TGAGGGGTCGGGGGGTGCGTTTCCAGGATGGGGGGGGGGAGCGGTCGACG
TCACCTGGCGGGAGCGGCGACTCTCCCGCCCACCACTTCGGGCTTGTATC
CCTGCAGGATAAGGCAACGCTCTTGTCGACTTTCACCACTCGCAGCGTCG
TCGACAGGGGGAGAAAAGAGATCCCGAGTTCAGCCGGAGGACGTGGAGGA
GCGGAGTCGAGGGGGCGAGAGCGGGGGCGCACAAAAACAGGAGGACTGCG
TGAAGAAGTCCCATTTGTGTGCCCCACCTTGCTTGCCTCCCGCGAGGACA
TTGATCGCACGATGAGGGATTCAAATCCCCCGGAAGTGGCACCGGACATG
TCGTATTGCTATGCCAACGACTTGCGCGTGCCCAACACTTATAGGGAGGC
TGTGTCCTCTGAGTATGCTGACTTGTGGGTAGACTCTGTAGAGAGGGAGT
TCAGAGGTCTGATGGAGGCTGGTACCTTTGAGGAAGTAATGTAG
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protein sequence of EsuBft1125_10a-0001

>EsuBft1125_10 ID=EsuBft1125_10|Name=EsuBft1125_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=647bp
MSSMMLLSLSPSWPRAKGKKAGVPHQSGTRAERPHDLWHTDMRGPMTASL
GGSLFMIMFVDSFSRWMKLRRKSDTLAFVKKFLADMSGTGVPRSFRMDNG
GEFVSRDFIAFCDNSGICRTYTAPGTPQQNGPAESAIWRVKKAGHAARLE
ARRLFLKIDFTRVPGVGRDGERLWLESCHWAAGGFNRSPTKANVGYKSPH
EFSTGRPPPLQIVPFLQPGYMRVMRARKMDPNAVLCCYLNNGDNHHESAV
KVLKFATGRVCMTNNVVWVSDRAPLLTPPLEMPAPAGEGGDSDVAAASFL
IEYISPPLLPPSPFARYPTSPAAISSQAPPATSTPPSPSPPSTAATPSPP
VTAPPATPPYTTTAPRATPLAAAPPFTTTAPPATPLAAAPPFTTTAPPAT
PFAVVPPPPAVVPPGAAPSTNMPPLTTRTIRELDVGRGDMRVSGRTRAAA
KDQVGGRASSMPPLSARANRELDLGRETRVPGRLRGRGVRFQDGGGERST
SPGGSGDSPAHHFGLVSLQDKATLLSTFTTRSVVDRGRKEIPSSAGGRGG
AESRGRERGRTKTGGLREEVPFVCPTLLASREDIDRTMRDSNPPEVAPDM
SYCYANDLRVPNTYREAVSSEYADLWVDSVEREFRGLMEAGTFEEVM
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mRNA from alignment at Scaffold_133:606579..608682-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1125_10a-0001 ID=EsuBft1125_10a-0001|Name=EsuBft1125_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2104bp|location=Sequence derived from alignment at Scaffold_133:606579..608682- (Ectocarpus subulatus male Bft15b)
ATGTCTTCGATGATGTTGCTTTCGCTGTCCCCGTCATGGCCCCGGGTAAG
CGCCCTTTTCGGTGGGGAAACCCACCAAGATTATTGACGTTGACCTTCTC
CACGTTTCGTGCTCCCACGCCAATGAGTTTCTTTTGCGTGAGCTTGCGAA
GCAGCACGGTCTCCGACTGACCGGTGTCCTGCAGCCTTGTGGTGGATGTC
TGCAGGCGAAGGGGAAGAAGGCGGGCGTGCCTCACCAATCGGGCACGCGC
GCGGAGCGGCCGCACGATCTTTGGCATACCGATATGCGTGGGCCGATGAC
CGCCTCGCTGGGGGGGTCGTTGTTCATGATCATGTTCGTAGACAGCTTCT
CGCGGTGGATGAAGCTGAGGCGCAAGTCGGACACCCTCGCCTTCGTCAAG
AAGTTCCTCGCCGACATGAGTGGCACCGGTGTCCCTCGTTCTTTCCGGAT
GGACAACGGGGGGGAGTTCGTCAGCCGCGACTTCATCGCCTTCTGCGACA
ACTCCGGCATCTGCCGTACGTACACGGCGCCGGGCACCCCGCAGCAGAAT
GGTCCGGCGGAGAGTGCGATCTGGCGCGTGAAAAAGGCCGGCCACGCCGC
TCGTCTCGAGGCACGCCGCCTGTTCCTCAAGATCGACTTCACCCGCGTCC
CCGGCGTCGGACGCGATGGCGAGCGACTTTGGCTGGAGTCGTGTCACTGG
GCTGCCGGCGGCTTCAACCGTTCTCCGACCAAGGCAAACGTCGGGTACAA
GTCGCCGCACGAGTTCTCCACCGGCCGCCCGCCCCCGCTCCAGATCGTCC
CGTTCTTACAGCCGGGGTATATGCGTGTTATGCGCGCGCGGAAGATGGAT
CCCAATGCAGTGCTGTGCTGCTACCTCAACAACGGCGACAACCATCACGA
GTCGGCGGTCAAGGTCCTCAAGTTCGCGACGGGGCGCGTGTGCATGACGA
ACAACGTCGTGTGGGTCTCCGACCGCGCGCCGTTGCTGACCCCGCCGCTG
GAGATGCCGGCGCCGGCGGGCGAGGGGGGGGATTCGGATGTCGCCGCCGC
ATCGTTTTTAATAGAGTACATTTCACCGCCTCTGTTACCCCCCTCACCGT
TCGCCCGATATCCCACTTCACCCGCTGCCATATCCTCACAGGCGCCGCCG
GCAACTTCCACACCACCATCGCCGTCGCCGCCGTCTACCGCAGCAACACC
ATCGCCACCGGTCACCGCGCCGCCTGCGACCCCACCGTACACCACCACCG
CGCCACGTGCAACGCCGCTCGCCGCCGCGCCACCGTTCACCACCACCGCG
CCGCCTGCAACGCCGCTCGCCGCCGCGCCACCGTTCACCACCACCGCGCC
GCCTGCAACGCCGTTTGCCGTCGTGCCACCGCCTCCCGCCGTCGTGCCGC
CCGGTGCCGCGCCATCGACCAACATGCCGCCGCTCACTACGAGGACCATC
CGTGAACTGGACGTGGGGCGCGGGGACATGAGGGTTTCCGGGCGCACGAG
GGCAGCCGCTAAGGACCAAGTGGGGGGGCGGGCGTCGTCAATGCCGCCCC
TCTCTGCCAGGGCCAATCGAGAGCTGGACTTGGGACGAGAGACGCGGGTG
CCAGGGAGGTTGAGGGGTCGGGGGGTGCGTTTCCAGGATGGGGGGGGGGA
GCGGTCGACGTCACCTGGCGGGAGCGGCGACTCTCCCGCCCACCACTTCG
GGCTTGTATCCCTGCAGGATAAGGCAACGCTCTTGTCGACTTTCACCACT
CGCAGCGTCGTCGACAGGGGGAGAAAAGAGATCCCGAGTTCAGCCGGAGG
ACGTGGAGGAGCGGAGTCGAGGGGGCGAGAGCGGGGGCGCACAAAAACAG
GAGGACTGCGTGAAGAAGTCCCATTTGTGTGCCCCACCTTGCTTGCCTCC
CGCGAGGACATTGATCGCACGATGAGGGATTCAAATCCCCCGGAAGTGGC
ACCGGACATGTCGTATTGCTATGCCAACGACTTGCGCGTGCCCAACACTT
ATAGGGAGGCTGTGTCCTCTGAGTATGCTGACTTGTGGGTAGACTCTGTA
GAGAGGGAGTTCAGAGGTCTGATGGAGGCTGGTACCTTTGAGGAAGTAAT
GTAG
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Coding sequence (CDS) from alignment at Scaffold_133:606579..608682-

>EsuBft1125_10a-0001 ID=EsuBft1125_10a-0001|Name=EsuBft1125_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1944bp|location=Sequence derived from alignment at Scaffold_133:606579..608682- (Ectocarpus subulatus male Bft15b)
ATGTCTTCGATGATGTTGCTTTCGCTGTCCCCGTCATGGCCCCGGGCGAA
GGGGAAGAAGGCGGGCGTGCCTCACCAATCGGGCACGCGCGCGGAGCGGC
CGCACGATCTTTGGCATACCGATATGCGTGGGCCGATGACCGCCTCGCTG
GGGGGGTCGTTGTTCATGATCATGTTCGTAGACAGCTTCTCGCGGTGGAT
GAAGCTGAGGCGCAAGTCGGACACCCTCGCCTTCGTCAAGAAGTTCCTCG
CCGACATGAGTGGCACCGGTGTCCCTCGTTCTTTCCGGATGGACAACGGG
GGGGAGTTCGTCAGCCGCGACTTCATCGCCTTCTGCGACAACTCCGGCAT
CTGCCGTACGTACACGGCGCCGGGCACCCCGCAGCAGAATGGTCCGGCGG
AGAGTGCGATCTGGCGCGTGAAAAAGGCCGGCCACGCCGCTCGTCTCGAG
GCACGCCGCCTGTTCCTCAAGATCGACTTCACCCGCGTCCCCGGCGTCGG
ACGCGATGGCGAGCGACTTTGGCTGGAGTCGTGTCACTGGGCTGCCGGCG
GCTTCAACCGTTCTCCGACCAAGGCAAACGTCGGGTACAAGTCGCCGCAC
GAGTTCTCCACCGGCCGCCCGCCCCCGCTCCAGATCGTCCCGTTCTTACA
GCCGGGGTATATGCGTGTTATGCGCGCGCGGAAGATGGATCCCAATGCAG
TGCTGTGCTGCTACCTCAACAACGGCGACAACCATCACGAGTCGGCGGTC
AAGGTCCTCAAGTTCGCGACGGGGCGCGTGTGCATGACGAACAACGTCGT
GTGGGTCTCCGACCGCGCGCCGTTGCTGACCCCGCCGCTGGAGATGCCGG
CGCCGGCGGGCGAGGGGGGGGATTCGGATGTCGCCGCCGCATCGTTTTTA
ATAGAGTACATTTCACCGCCTCTGTTACCCCCCTCACCGTTCGCCCGATA
TCCCACTTCACCCGCTGCCATATCCTCACAGGCGCCGCCGGCAACTTCCA
CACCACCATCGCCGTCGCCGCCGTCTACCGCAGCAACACCATCGCCACCG
GTCACCGCGCCGCCTGCGACCCCACCGTACACCACCACCGCGCCACGTGC
AACGCCGCTCGCCGCCGCGCCACCGTTCACCACCACCGCGCCGCCTGCAA
CGCCGCTCGCCGCCGCGCCACCGTTCACCACCACCGCGCCGCCTGCAACG
CCGTTTGCCGTCGTGCCACCGCCTCCCGCCGTCGTGCCGCCCGGTGCCGC
GCCATCGACCAACATGCCGCCGCTCACTACGAGGACCATCCGTGAACTGG
ACGTGGGGCGCGGGGACATGAGGGTTTCCGGGCGCACGAGGGCAGCCGCT
AAGGACCAAGTGGGGGGGCGGGCGTCGTCAATGCCGCCCCTCTCTGCCAG
GGCCAATCGAGAGCTGGACTTGGGACGAGAGACGCGGGTGCCAGGGAGGT
TGAGGGGTCGGGGGGTGCGTTTCCAGGATGGGGGGGGGGAGCGGTCGACG
TCACCTGGCGGGAGCGGCGACTCTCCCGCCCACCACTTCGGGCTTGTATC
CCTGCAGGATAAGGCAACGCTCTTGTCGACTTTCACCACTCGCAGCGTCG
TCGACAGGGGGAGAAAAGAGATCCCGAGTTCAGCCGGAGGACGTGGAGGA
GCGGAGTCGAGGGGGCGAGAGCGGGGGCGCACAAAAACAGGAGGACTGCG
TGAAGAAGTCCCATTTGTGTGCCCCACCTTGCTTGCCTCCCGCGAGGACA
TTGATCGCACGATGAGGGATTCAAATCCCCCGGAAGTGGCACCGGACATG
TCGTATTGCTATGCCAACGACTTGCGCGTGCCCAACACTTATAGGGAGGC
TGTGTCCTCTGAGTATGCTGACTTGTGGGTAGACTCTGTAGAGAGGGAGT
TCAGAGGTCTGATGGAGGCTGGTACCTTTGAGGAAGTAATGTAG
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