EsuBft1124_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1124_8a-0001
Unique Name	EsuBft1124_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_361	contig	Scaffold_361:72857..74268 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1124_8
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	133
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1124_8a	EsuBft1124_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_361 72857..74268 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1124_8a-0001-exon	agat-exon-56943	Ectocarpus subulatus male Bft15b	exon	Scaffold_361 72857..73715 -
EsuBft1124_8a-0001-exon	EsuBft1124_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_361 73790..74268 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1124_8a-0001-exon	agat-three_prime_utr-1170	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_361 72857..73345 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1124_8a-0001-cds	EsuBft1124_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_361 73346..73715 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1124_8a-0001	EsuBft1124_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_361 73346..74268 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_361:72857..74268-
coding sequence from alignment at Scaffold_361:72857..74268-

spliced messenger RNA

>EsuBft1124_8a-0001 ID=EsuBft1124_8a-0001|Name=EsuBft1124_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1338bp|location=Sequence derived from alignment at Scaffold_361:72857..74268- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGAAGGCGAGTAAGTCTCCTACAGCTCACCGCCAACCTCGGCGGCA
GCTCACCGAGCCGGGCGGGGGCGACGTGGTGTACGCCAAGTTTCTCAACT
GGGCGTCCTACAAGAGCTTAGAGGAGCGACAAAGCGACGACTTCACTGAC
CCTGGCCGCACGCTCTTCCTCTCGACGCCGTGTAAGTGCCTGGTTCAACC
CGCAGACGCACGTGGGAGTGGCAGGGTGCACGTGACGGAATCATGGATCT
TTGCATCTGAAGACATGGCGCATGACTGCGATTTCCACCTGCACGGCTTG
GCCAGGATGGCGGACTACTACCTGCGTGGAGATGGAAGCGAAGCAACAGC
TGCCGCCCGGAAAGAAGGCCGGACGCCCCGGATTCATATGTTCACGGATG
GACGCGGGAAGCAGTACAAGGGAAGGCGGAATTTCCGGCCGACAGCGTGC
GGCAAATCGGCTTCTTCATCGATCATCACGNTCGCGGCCACATCTCACTT
CAAAGGTTGCCATGATGGGATCGGCGGAGTCGCAAAGAACGCCATGAAGA
GGAGGGAGAGATTTGGCAAGCGAATCATGGGGGCGGACGGGGTGGTCAGC
TTTTTGCGAAGCTTCTTTCGGGAGAAGGCAGGCAGCGAGGGGGAGGAGGG
TATGCGGAAGTATTTTGCAAAGTGGTCTCCGTACCGCATGCGGAGGGTGC
ACGTCGAGTTTATCGGCAAGAAGGAGATGTATCGGCCAAATTCGGTCCTG
GCAGGCACAGAGGGTACACGAGACATGTACCACTTCGCGGGAGCAAATAC
TCCCAAGTGGGATGGGTCCACCACAACCGAGGGGCGCGTAGATGACTGAA
AGCTGGTACGAAAGAGCGAAGGGCGGGGTAGCTTGTCGAGTCAAGAGAAG
AGAAGGTTGCGGGAAGTCAAGGTGTTGGGTGCAGTAGCGAGCAGATGGAC
GGGTAAGGGGGCTAAGTTGCAGGATCCGGTGTCGCGGGAGGAAGACGTGA
CTTGCAGAAAGGTGAAACGGACGTACAGGCTCAGGACTCGGCTGGCGTCG
TGCTTCTGCTCGGCGTGCCAGCGTTGCGAGTATGAGCAGTGCTACGTCAG
CAAGACGTACCCACGTCTCGTTCCCGCATTGCAAGAGGGCGAAGTGAAGG
AAACGGTGATCATGGACACTGGAGTAGCGCCCGTAGACGAAGATGACTCC
CGGGGGATCCAGTTCGGGAGTAGGAAGAAGGAATGCAATATGAAGAGAAT
TACTGGGACACAATGGCAAGACTGCGAATCTGCTGCTGCGTCAAAGATTT
GAGAAGGGCTTGGTAGGAAGGTCGGCACACAACTGGTT

protein sequence of EsuBft1124_8a-0001

>EsuBft1124_8 ID=EsuBft1124_8|Name=EsuBft1124_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=282bp
MWKASKSPTAHRQPRRQLTEPGGGDVVYAKFLNWASYKSLEERQSDDFTD
PGRTLFLSTPCKCLVQPADARGSGRVHVTESWIFASEDMAHDCDFHLHGL
ARMADYYLRGDGSEATAAARKEGRTPRIHMFTDGRGKQYKGRRNFRPTAC
GKSASSSIITXAATSHFKGCHDGIGGVAKNAMKRRERFGKRIMGADGVVS
FLRSFFREKAGSEGEEGMRKYFAKWSPYRMRRVHVEFIGKKEMYRPNSVL
AGTEGTRDMYHFAGANTPKWDGSTTTEGRVDD

mRNA from alignment at Scaffold_361:72857..74268-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1124_8a-0001 ID=EsuBft1124_8a-0001|Name=EsuBft1124_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1412bp|location=Sequence derived from alignment at Scaffold_361:72857..74268- (Ectocarpus subulatus male Bft15b)
ATGTGGAAGGCGAGTAAGTCTCCTACAGCTCACCGCCAACCTCGGCGGCA
GCTCACCGAGCCGGGCGGGGGCGACGTGGTGTACGCCAAGTTTCTCAACT
GGGCGTCCTACAAGAGCTTAGAGGAGCGACAAAGCGACGACTTCACTGAC
CCTGGCCGCACGCTCTTCCTCTCGACGCCGTGTAAGTGCCTGGTTCAACC
CGCAGACGCACGTGGGAGTGGCAGGGTGCACGTGACGGAATCATGGATCT
TTGCATCTGAAGACATGGCGCATGACTGCGATTTCCACCTGCACGGCTTG
GCCAGGATGGCGGACTACTACCTGCGTGGAGATGGAAGCGAAGCAACAGC
TGCCGCCCGGAAAGAAGGCCGGACGCCCCGGATTCATATGTTCACGGATG
GACGCGGGAAGCAGTACAAGGGAAGGCGGAATTTCCGGCCGACAGCGTGC
GGCAAATCGGCTTCTTCATCGATCATCACGTCGCGTCCACATCTCACTTC
AAAGATTGCCATGGTGGGATTGGCGGAGTGGCAAAGAACGCCATGAAGAG
GAGGNTCGCGGCCACATCTCACTTCAAAGGTTGCCATGATGGGATCGGCG
GAGTCGCAAAGAACGCCATGAAGAGGAGGGAGAGATTTGGCAAGCGAATC
ATGGGGGCGGACGGGGTGGTCAGCTTTTTGCGAAGCTTCTTTCGGGAGAA
GGCAGGCAGCGAGGGGGAGGAGGGTATGCGGAAGTATTTTGCAAAGTGGT
CTCCGTACCGCATGCGGAGGGTGCACGTCGAGTTTATCGGCAAGAAGGAG
ATGTATCGGCCAAATTCGGTCCTGGCAGGCACAGAGGGTACACGAGACAT
GTACCACTTCGCGGGAGCAAATACTCCCAAGTGGGATGGGTCCACCACAA
CCGAGGGGCGCGTAGATGACTGAAAGCTGGTACGAAAGAGCGAAGGGCGG
GGTAGCTTGTCGAGTCAAGAGAAGAGAAGGTTGCGGGAAGTCAAGGTGTT
GGGTGCAGTAGCGAGCAGATGGACGGGTAAGGGGGCTAAGTTGCAGGATC
CGGTGTCGCGGGAGGAAGACGTGACTTGCAGAAAGGTGAAACGGACGTAC
AGGCTCAGGACTCGGCTGGCGTCGTGCTTCTGCTCGGCGTGCCAGCGTTG
CGAGTATGAGCAGTGCTACGTCAGCAAGACGTACCCACGTCTCGTTCCCG
CATTGCAAGAGGGCGAAGTGAAGGAAACGGTGATCATGGACACTGGAGTA
GCGCCCGTAGACGAAGATGACTCCCGGGGGATCCAGTTCGGGAGTAGGAA
GAAGGAATGCAATATGAAGAGAATTACTGGGACACAATGGCAAGACTGCG
AATCTGCTGCTGCGTCAAAGATTTGAGAAGGGCTTGGTAGGAAGGTCGGC
ACACAACTGGTT

Coding sequence (CDS) from alignment at Scaffold_361:72857..74268-

>EsuBft1124_8a-0001 ID=EsuBft1124_8a-0001|Name=EsuBft1124_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=849bp|location=Sequence derived from alignment at Scaffold_361:72857..74268- (Ectocarpus subulatus male Bft15b)
ATGTGGAAGGCGAGTAAGTCTCCTACAGCTCACCGCCAACCTCGGCGGCA
GCTCACCGAGCCGGGCGGGGGCGACGTGGTGTACGCCAAGTTTCTCAACT
GGGCGTCCTACAAGAGCTTAGAGGAGCGACAAAGCGACGACTTCACTGAC
CCTGGCCGCACGCTCTTCCTCTCGACGCCGTGTAAGTGCCTGGTTCAACC
CGCAGACGCACGTGGGAGTGGCAGGGTGCACGTGACGGAATCATGGATCT
TTGCATCTGAAGACATGGCGCATGACTGCGATTTCCACCTGCACGGCTTG
GCCAGGATGGCGGACTACTACCTGCGTGGAGATGGAAGCGAAGCAACAGC
TGCCGCCCGGAAAGAAGGCCGGACGCCCCGGATTCATATGTTCACGGATG
GACGCGGGAAGCAGTACAAGGGAAGGCGGAATTTCCGGCCGACAGCGTGC
GGCAAATCGGCTTCTTCATCGATCATCACGNTCGCGGCCACATCTCACTT
CAAAGGTTGCCATGATGGGATCGGCGGAGTCGCAAAGAACGCCATGAAGA
GGAGGGAGAGATTTGGCAAGCGAATCATGGGGGCGGACGGGGTGGTCAGC
TTTTTGCGAAGCTTCTTTCGGGAGAAGGCAGGCAGCGAGGGGGAGGAGGG
TATGCGGAAGTATTTTGCAAAGTGGTCTCCGTACCGCATGCGGAGGGTGC
ACGTCGAGTTTATCGGCAAGAAGGAGATGTATCGGCCAAATTCGGTCCTG
GCAGGCACAGAGGGTACACGAGACATGTACCACTTCGCGGGAGCAAATAC
TCCCAAGTGGGATGGGTCCACCACAACCGAGGGGCGCGTAGATGACTGA