EsuBft1124_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1124_2a-0001
Unique NameEsuBft1124_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_361contigScaffold_361:4310..5861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LRF1
ProteomeIdEsuBft1124_2
Protein domainsIPR007087
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length84
Hectar predicted targeting categoryother localisation
Evalue5.52e-101
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
Cross References
External references for this mRNA
DatabaseAccession
GO0046872
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1124_2aEsuBft1124_2aEctocarpus subulatus male Bft15bgeneScaffold_361 4310..5861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1124_2a-0001EsuBft1124_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_361 4310..5773 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1124_2a-0001-exonEsuBft1124_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_361 4310..4566 +
EsuBft1124_2a-0001-exonagat-exon-56902Ectocarpus subulatus male Bft15bexonScaffold_361 4677..4710 +
EsuBft1124_2a-0001-exonagat-exon-56905Ectocarpus subulatus male Bft15bexonScaffold_361 4801..4932 +
EsuBft1124_2a-0001-exonagat-exon-56904Ectocarpus subulatus male Bft15bexonScaffold_361 5216..5237 +
EsuBft1124_2a-0001-exonagat-exon-56903Ectocarpus subulatus male Bft15bexonScaffold_361 5463..5861 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1124_2a-0001-cdsEsuBft1124_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_361 4310..4566 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1124_2a-0001-exonagat-three_prime_utr-1165Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_361 5774..5861 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1124_2a-0001 ID=EsuBft1124_2a-0001|Name=EsuBft1124_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=844bp|location=Sequence derived from alignment at Scaffold_361:4310..5861+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTGCCCTTGGCGACGTCGAGGGAGCTCCAGAAGCTCGCAGCACT
CGAAGCAAAGGGTGGGATCCTTGAACGACAGTACGAGGTGATCAAGATAC
ACGTTAGGCAGGGCAACTCCCTCTCGAGCGAAGACTGGGAGGCCTTCGAT
TTGGCGTGGGAACTGAGGAGCAGCGGCGTGTTTTCGCAAGAAGAGTGGAC
CACGCAGGTTGATGGAGACATCTCGGGCATCATCAACAACAGCGATCGCC
CTACACTCGGCGTGTTTTCGCAAGAAGAGTGGACCACGCAGCGGTCAACA
GCAGCAGCAGCAGCAGCTCCGGCGGCGCGCGGGGCCCCGAATCGAGGAAA
GAGACAACGAGAGGACGCCAGCAAAGGCTCGCTGAACATCTACAACTCGT
TCCCTATTGGCAGCGGGGAACCGAGAATTTTTTGTCACATACCAGGAGTA
TGTGACCGGGGTCAGTTTTGCATTCCCGGCCCGGCCCCCCGTGTGCGATG
CCCCCACTGTCCGACGACCTTTTTGAACACAGAAGGCCTGGGAGTCCACA
TGAAAACCAACCACAGCACGGCAAACATGTTGCAAGGCCAGCGACTGCAG
CGGATGCTGGCAGACTATGCGAAAGGGGATGTCCTGCCGTGGGAGCGCGC
CGGACCTGGGCGCTGGTATCACGTGAAGATAGATCGATGGCATCACGGGG
GCAGCTTCGTTCGTCCTCCAGCCGAAGCGTCTCCCCGACATCGACCTGGA
ATCTGATGGCTTCACGCGTGCTGAACCTAAGTCCGCTCGTCGTGGCGCTG
CCAAGCGCAATCGCTACAGGTTCACAGCCCACGTGCTCCAGCAG
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protein sequence of EsuBft1124_2a-0001

>EsuBft1124_2 ID=EsuBft1124_2|Name=EsuBft1124_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=251bp
MSLPLATSRELQKLAALEAKGGILERQYEVIKIHVRQGNSLSSEDWEAFD
LAWELRSSGVFSQEEWTTQVDGDISGIINNSDRPTLGVFSQEEWTTQRST
AAAAAAPAARGAPNRGKRQREDASKGSLNIYNSFPIGSGEPRIFCHIPGV
CDRGQFCIPGPAPRVRCPHCPTTFLNTEGLGVHMKTNHSTANMLQGQRLQ
RMLADYAKGDVLPWERAGPGRWYHVKIDRWHHGGSFVRPPAEASPRHRPG
I
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mRNA from alignment at Scaffold_361:4310..5861+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1124_2a-0001 ID=EsuBft1124_2a-0001|Name=EsuBft1124_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1552bp|location=Sequence derived from alignment at Scaffold_361:4310..5861+ (Ectocarpus subulatus male Bft15b)
ATGTCGCTGCCCTTGGCGACGTCGAGGGAGCTCCAGAAGCTCGCAGCACT
CGAAGCAAAGGGTGGGATCCTTGAACGACAGTACGAGGTGATCAAGATAC
ACGTTAGGCAGGGCAACTCCCTCTCGAGCGAAGACTGGGAGGCCTTCGAT
TTGGCGTGGGAACTGAGGAGCAGCGGCGTGTTTTCGCAAGAAGAGTGGAC
CACGCAGGTTGATGGAGACATCTCGGGCATCATCAACAACAGCGATCGCC
CTACACTGTCTTAAGACCACGCTGCCGCGTCGTCCGCATCCGGAAAGCGG
TCAACNGCAACTCCCTCTCGAGCGAAGACTGGGAGGCCTTCGATTTGGCG
TGGGAACTGAGGAGCAGCGGCGTGTTTTCGCAAGAAGAGTGGACCACGCA
GGTTGATGGAGACATCTCGGGCATCATCAACAACAGCGATCGCCCTACAC
TGTCTTAAGACCACGCTGCCGCGTCGTCCGCATCCGGAAAGCGGTCAACA
GCAGCAGCAGCAGCAGCTCCGGCGGCGCGCGGGGCCCCGAATCGAGGAAA
GAGACAACGAGAGGACGCCAGCAAAGGCTCGCTGAACATCTACAACTCGT
TCCCTATTGGCAGCGGGGAACCGGTGAGCCCCTGCAAACTCTGCACAAAC
AATTGATGTCTTCAAAATGGTCTGTATGTGGCAGTGGGTATTTCTGAGTA
CATTCCAGCATGTATGTGCACAGCAGTTGTTTTTTTTCGCGTTTGTATGT
GATTGTCCGTCTTTTCTTGTTGGCACGTGTGTGTGTGTGTCTACATCTAT
TTTTGTAGTGTATAAACATCACGTGATACGCCGTTGCAAATCGTGGAGTT
TTGATTGGCATACAAAACTGCCGTGTCCGGCCGCCCGCCCCGGAAAGTTG
AAGCAGAGAATTTTTTGTCACATACCAGGTATATGTCAATGCGTGTGTAA
ACTTCTACTACTGTTGTACCTCGATGCAAAACATACATAATACATGTAAA
GGAACAAAATATCCGACACACCGATGTGCGTGGTGTACTGCTGTCGGTAC
TGCTGCATGGATTTTTTCAACCTTGCTGATTGTGTATTTACGTATGGCAT
GCGCATCTTTTCCCATTGGTCGGTAGGTTTTGCGGACTAGCGCTGACGTG
CAGGAGTATGTGACCGGGGTCAGTTTTGCATTCCCGGCCCGGCCCCCCGT
GTGCGATGCCCCCACTGTCCGACGACCTTTTTGAACACAGAAGGCCTGGG
AGTCCACATGAAAACCAACCACAGCACGGCAAACATGTTGCAAGGCCAGC
GACTGCAGCGGATGCTGGCAGACTATGCGAAAGGGGATGTCCTGCCGTGG
GAGCGCGCCGGACCTGGGCGCTGGTATCACGTGAAGATAGATCGATGGCA
TCACGGGGGCAGCTTCGTTCGTCCTCCAGCCGAAGCGTCTCCCCGACATC
GACCTGGAATCTGATGGCTTCACGCGTGCTGAACCTAAGTCCGCTCGTCG
TGGCGCTGCCAAGCGCAATCGCTACAGGTTCACAGCCCACGTGCTCCAGC
AG
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Coding sequence (CDS) from alignment at Scaffold_361:4310..5861+

>EsuBft1124_2a-0001 ID=EsuBft1124_2a-0001|Name=EsuBft1124_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=756bp|location=Sequence derived from alignment at Scaffold_361:4310..5861+ (Ectocarpus subulatus male Bft15b)
ATGTCGCTGCCCTTGGCGACGTCGAGGGAGCTCCAGAAGCTCGCAGCACT
CGAAGCAAAGGGTGGGATCCTTGAACGACAGTACGAGGTGATCAAGATAC
ACGTTAGGCAGGGCAACTCCCTCTCGAGCGAAGACTGGGAGGCCTTCGAT
TTGGCGTGGGAACTGAGGAGCAGCGGCGTGTTTTCGCAAGAAGAGTGGAC
CACGCAGGTTGATGGAGACATCTCGGGCATCATCAACAACAGCGATCGCC
CTACACTCGGCGTGTTTTCGCAAGAAGAGTGGACCACGCAGCGGTCAACA
GCAGCAGCAGCAGCAGCTCCGGCGGCGCGCGGGGCCCCGAATCGAGGAAA
GAGACAACGAGAGGACGCCAGCAAAGGCTCGCTGAACATCTACAACTCGT
TCCCTATTGGCAGCGGGGAACCGAGAATTTTTTGTCACATACCAGGAGTA
TGTGACCGGGGTCAGTTTTGCATTCCCGGCCCGGCCCCCCGTGTGCGATG
CCCCCACTGTCCGACGACCTTTTTGAACACAGAAGGCCTGGGAGTCCACA
TGAAAACCAACCACAGCACGGCAAACATGTTGCAAGGCCAGCGACTGCAG
CGGATGCTGGCAGACTATGCGAAAGGGGATGTCCTGCCGTGGGAGCGCGC
CGGACCTGGGCGCTGGTATCACGTGAAGATAGATCGATGGCATCACGGGG
GCAGCTTCGTTCGTCCTCCAGCCGAAGCGTCTCCCCGACATCGACCTGGA
ATCTGA
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