EsuBft1123_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1123_5a-0001
Unique NameEsuBft1123_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_99contigScaffold_99:199220..204025 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog115417.EPrPW00000016698
ProteomeIdEsuBft1123_5
Protein domainsIPR006806
Protein domainsPTHR12653
Ownerapollo_admin@sb-roscoff.fr
Noteprobable nadh dehydrogenase [Automatic annotation]
Nb exon3
Max annot lvl121069|Pythiales
Length1685
Hectar predicted targeting categorymitochondrion
Evalue3.91e-29
EggNOG OGsKOG3365@1|root,KOG3365@2759|Eukaryota,1MHEE@121069|Pythiales
Ec32 ortholog descriptionNADH dehydrogenase (ubiquinone)
Ec32 orthologEc-21_001150.1
Date last modified2016-09-19
Date creation2016-06-14
DescriptionProbable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial
DescriptionNADH dehydrogenase. Source PGD
COG categoryC
NoteGroisillier A., annotator
Cross References
External references for this mRNA
DatabaseAccession
GO0071704
GO0003676
GO0044281
GO0005747
TCDB3.D.1.6..
GO0016651
GO0044238
GO0022904
GO0009507
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1123_5aEsuBft1123_5aEctocarpus subulatus male Bft15bgeneScaffold_99 199220..204025 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1123_5a-0001EsuBft1123_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_99 200376..203043 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1123_5a-0001-exonagat-exon-81232Ectocarpus subulatus male Bft15bexonScaffold_99 199220..200534 -
EsuBft1123_5a-0001-exonEsuBft1123_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_99 201904..201987 -
EsuBft1123_5a-0001-exonagat-exon-81231Ectocarpus subulatus male Bft15bexonScaffold_99 202909..203077 -
EsuBft1123_5a-0001-exonagat-exon-81233Ectocarpus subulatus male Bft15bexonScaffold_99 203909..204025 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1123_5a-0001-exonagat-three_prime_utr-1162Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_99 199220..200375 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1123_5a-0001-cdsEsuBft1123_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_99 200376..200534 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1123_5a-0001-exonagat-five_prime_utr-736Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_99 203044..203077 -
EsuBft1123_5a-0001-exonagat-five_prime_utr-737Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_99 203909..204025 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1123_5a-0001 ID=EsuBft1123_5a-0001|Name=EsuBft1123_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1685bp|location=Sequence derived from alignment at Scaffold_99:199220..204025- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTACCTAGACACAGCACACGAGCAGCACAGCGTGCCCTTCCGAACGAGC
AGGGTTGCACACGCTGAAGCAGTCGTAGGGCCGGGCCGGACAATAGATAC
TTGTAGGAAGAGATAAGCAGAAAGAAACGGTTGAGGATACGATCCAGCAG
CATGGCGTTTAGGGCGACGCAAGCGGTGCGAATGGTGGTCAAGAAGACCT
CCACGGGGCTTGTGGGATTAGCTGTGGACGTCAACGCGCGAGCCAACTTC
ATCGCGTTGCAAAAACAGATCCTAGAGAAGATCAAGGTTATCCCGGATCA
CGCGCAATACCGGAAGGACGTGGAGGCTATCAGTGGGTACAGGCTCAAAG
TGGCAATGGAGAACGAGGACGAGGAGACGATAGAGGACAAGATCAACCAC
GGGCAGCTGGAGGAGCTCCTTGTGGACGGCAAGAACGAGCTCAAGCTCAT
CGACAAGTACGCCGAGTGGCGGCTGTGGGAGGCAGTGGACGAGCTCAACA
AGGCCGACCCGGAGAGGCAGGAGGCCTAAAGTTCCCGTCTGTGTATTTGT
TCGGGCGAAATGAAAGCGCCATCCACGTGCGTATTCTGGCGAGAGAAAGC
TTAGTAACCCGCCTACGTATCGGTGCCGAAAGAGGCGTTTAACCTCTGCG
TATTCCGGCCAATGGAGGCCTACAGATTCTGTAGCGTGTTCGGGCGAAAG
GAAATGCTGGTTCCGTCATCGTACCGGAGAGGATGGATGACAGTCCAGAG
AGGAGATGGTGTAGTTCGGAGGAAGCGAGGCCGGCACCGTACAAGAAGCC
GGTGGGGGGGGGGTATGGGAGACATCCTGGGGGGCGGGGGCCGGTAGAGC
AACGGAGCGGGCCTTCTTTCTAGCACGTTTTTCGTTCTCTGTGACGACCT
ACACGCCGAGCGTATCTCGACATGTGCATCTTTTTTTTTATTTCGAGGGA
TGCTTCCTCGGGTGCTTGCATAGGGCAGTAGGGTGGTACCCTTGATCAAG
AATGCTGCTCACGTTCGCGAGGCATACATGTGTCGATTGCGACAAGCTGG
GTGTTATCCCAGTCCGGATACTAACTAGAGCGAATTATTGGCTGGTACGG
CAGTGTTTTGCCGTGTACTCTGTTCGGAGCGTTCGTGCCTACGAAGTTGT
GTGTTGCGTGATATTTTCGTTCGCGTTTGCATCTCTGTGTGGAGAACATA
TTTCAACCTCGTGCACGTATCCTTGTTTTGCTCGTGTTTACGAGTCGAAG
CAACGGCGGCAGAACCGCGTTTTCTCTGTCTGCTTCGCCACTACAGGAGA
CGAGGCTTATCAGCTCCTTGTTGCACAGATTTATTTCGCCAAGAACCAGA
TCTCAAGCGCTTTTGATACTATCTCCGTTATGTAGGGCTCCAATACCCAA
GGGTACATGCGCGAAAGTCTTCGAAACACAGGAATGACACCCGAAGAGAA
TAAGATGTAGAGCGAACTCCAACGTACTCGTATGGATTGTCTGCAATGGG
GCACCTCATCGCCTGTACCACGCTCTGCTCAGGGAGTACGGAGTTTAATG
TGGCGCAAAAAGTTCGTGAGGTGCTGGTTACGTTGGTCGCGCGAAGCATC
GTTACGGCTAATATTAGGCTGAAGTCACTTGCCGTTTCGTGCGACGCCCC
TCCCGCCGCCCCCACACGTGCGGAAGGAATATGGC
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protein sequence of EsuBft1123_5a-0001

>EsuBft1123_5 ID=EsuBft1123_5|Name=EsuBft1123_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=125bp
MAFRATQAVRMVVKKTSTGLVGLAVDVNARANFIALQKQILEKIKVIPDH
AQYRKDVEAISGYRLKVAMENEDEETIEDKINHGQLEELLVDGKNELKLI
DKYAEWRLWEAVDELNKADPERQEA
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mRNA from alignment at Scaffold_99:199220..204025-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1123_5a-0001 ID=EsuBft1123_5a-0001|Name=EsuBft1123_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4806bp|location=Sequence derived from alignment at Scaffold_99:199220..204025- (Ectocarpus subulatus male Bft15b)
GTTACCTAGACACAGCACACGAGCAGCACAGCGTGCCCTTCCGAACGAGC
AGGGTTGCACACGCTGAAGCAGTCGTAGGGCCGGGCCGGACAATAGATAC
TTGTAGGAAGAGATAAGGTGAGAAAGGGAGCTTTGAGTGGGCACGTGAGG
GGATGCTTTGCTCCCCGTCTGCAGAGTGATGTAGGTGCTACAAAATGCTC
GCCGTCATGCTCGGTTGTACATCGCATCGCCAACACCCGGCGGTCATCGC
GACAGCACTCGTCTGTGCCAAGTGACCTTGGAGCCGACATTGCCACTAGA
CACGGGAGGCGAAACAGTCCATGTTTTTGCTACGCAAGGATTGCACGTGC
TATAATAGGCCCTGGGCAGCAACGGTGTACAAACACGTAGTGGACCCCCG
TTCCAACTCGGGGCTGCCTGCTTCGGCAGTACTTCTGTGCAGCAGTACAC
GAGCTCAGCAGTCTCATTACATGTAGAGCATGGCCTATAAGTAGTCTACA
TTCAGCAGTAGGGCAATCAGGTCGAACAAGCCGGGCAAGCAAGTCGTGGA
AATACGTAGGCAGCCACTACATGAATAGTTTGATTTCCCTATGAGAGTCA
GACCAAATCAAGAGGGCGGCCTCCACATCAGGAACGTTGGTATCAACGAA
GAGCTTCCGCCGGATGCCCCGATACCTTGTACTGCTGTTGCTTGTCCTCC
TCACTCGTACACATCCTCTCTCTCTCTGGCTTGCGTGGACCATTAAAATA
TGTACCGCACCAGTAGAGAACAGGAGCAACGAAAAATTGTGCTGTCTTGC
ACCATGGCTATTATTCGAAGTCTGCCGTATCAATAAGCGAGTAATCGCTA
TCGGCGATGTTGCGGCGGGCAATGTTTCCTGCATCAGGCTTGACACGCGC
AGCTGTCCACGCGCTGTATTGTGTGCTTTTCTTCCGTGTTGTCAGCAGCA
GAAAGAAACGGTTGAGGATACGATCCAGCAGCATGGCGTTTAGGGCGACG
CAAGCGGTGCGAATGGTGGTCAAGAAGACCTCCACGGGGCTTGTGGGATT
AGCTGTGGACGTCAACGCGCGAGCCAACTTCATCGCGTTGCAAAAACAGA
TCCTAGAGAAGATCAAGGTGAGGCTGGGCTGTTGGCAGTGAGGTTGGACC
GCTTACGTAGGATTTGAAGAGTATCTAGAGAAAGAATAGGCAGGGGGCAC
GCAGACCCTATCCCTAACCCTAACCCAACCCTAAAGCACGGATTGAACAC
TTTATCCCATATGCTTGCTTCATCAATGTTGCTGCGTAGACTACATGTAC
TGCTGAGGTTGGTAGTGACTGAGTTTGGCGTCGACGATGCTGTTGGATAT
TGCTGTGGTGGCGATCATTTCAAGGGCACACGGTAGCCGACGCCCATTAG
CGACGGCAACGGGCGATGCCGTTGCGATGTATGTTGGCACCCGTGCGCAG
GTGTACCGATTCTGGTAACAGTCAATCGACGGAAACCCTGCGAATCGGGT
CTTCCGTGAACACTGCACCCACAGAAAGTACCCTCGACAGGGAACCTCTT
GTGGCCAGGGCGGGAAATTCGATGAAACTGTCACAGATTCTTTGTGGGAT
CGACTCCAAGAGGTGCTCTTAGGACTGAAACACATTTGTGCCGAAGGGAA
AAAATGTCTAGTCAGGAGAAAACTATGCAACCAAGGAGATTCGAACCAGT
ACCCTTGGGTGACGCCTTGTGCGAAGGTGTATCGATTCTGATAAAAGGCA
ATCAACGGATGCCCTGCGAATCGGGTCCTCCCTAACACCTGTGTGGGACT
GCTGTTCCACGAAATTGTAAAACTTTATTTCGACTGTCTTCTGCGTAAGA
CGGTGGCGTCTTTCAGTAGACCCGCCCCGCTTGGCCGCAGTGGGGAACCC
ATCCCTTTGCAGGCGCTTCTTGCCTCGATCTGGTGCTCCACGCTACGTGT
GCTCAAACCCTTGCTTGAACTTGTCGATCCGTTGGCTTACCTCCTAACGC
TCCGCTCGCGTTGCGCGGTATGGTATGGTATGGTGCAGGTTATCCCGGAT
CACGCGCAATACCGGAAGGACGTGGAGGCTATCAGTGGGTACAGGCTCAA
AGTGGCAATGGAGAACGAGGACGTGAGAAACTTGTGAATGTGTGTGTGTT
TTTTTAACAGCATCGACCGCGCTAACCGGCTGACCAAAGAACAGACTTCA
GTCTCAAGTGCTGCAAACAGAAAATAACTGTTTCTCAAGGCCATCATGTG
GGACCACGTGAGGGGGCGTCATGGGGAGGCTAAGCTATTCTCCGGATTAA
GAGAGAAACGGCAGCAGCAGAAGAAGCTATATTTGTGTTTGTGTGTGTGT
GTGGGGGGTACTCATATAGATGCATGCCGTAGTCGTTAGACCGTTGACCA
CGCGTCAGTCCTCGAGAGGACGGACCATTGTTCCCACAGGATCGATCACC
GATGGCCAATCGTTCCTTCCTACTCTGCCTAAGGTGGGGGGGTGGGGGGG
GGGGGGGTACTCATGTGAATGCATGCCGTAGTCGTCAGACCGTTGTCTTC
CCCCATCTCTACAATGCCGGGACGGACGACCTGCCTGGTTTTCACCGGCC
CAGGCCACGTTTCACAAGGATAAACCAGAGTGTTCGTATATTTGTTGATT
AGCATCGACCGCTCTAAACGGCTGACCAATGAAAATACGTCGGTCTAATA
GCGGGAAGTAAAATTGCCAACACGCTTTTATTGAACGGGCAAGGGTCCTA
CCGTAAGGAGGGCGCAGGAATGTGTATATGGGGGGGACTGACAACCTTCG
GTTGGGTGGTATTTGTCAAGGGTGGGCAGGCAGGGGTGTTCGTGCATGCT
TTGACGCGATGCGGTGATGCCCGGTGTGGCCTACTACCACCGCGTGCTTG
CTCCTACCGTTCTGCCCACCACCGGACGACACGGCCAGCAACGGAAATGC
TGCTCAAAACCTTGTCGTTACTTAAAACCGACGAACGTCGTCCTCTTCCT
TGGCTGTCACAAACCCCTGTGTCCCATTGTCCGGCAGAGAAGAAAGTGGT
TGCCGTCGTGTCACTGTTGTTGCGTTTATTTCCACCACCATGTCGTCAAG
GACTATCGATGCCGGCGATCTATTTTTCTTTGGCGGCAAGGGGGTGTCTG
TTGCAAGCGAAGCTGGCACGTCTCGTGAAGAGCAAAATGTCCAAATTTCC
GTCAGTCACATCTTCGTGCTGGTTGCTCCGAGCATTGAGTGTCTTCACAG
GGACGTTTCTCGTCCTCAGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCNGCCCCCCGCGACCACAACCGAAACCACCGAAC
CACGCACCGCACTCATCGTGCCGTCCGTCCACCCATCCCGACCCAACGCC
GCCTCTCGTAACGCTGCATACTGCTGTACCTCCTCCTCAAGGAGGAGACG
ATAGAGGACAAGATCAACCACGGGCAGCTGGAGGAGCTCCTTGTGGACGG
CAAGAACGAGCTCAAGCTCATCGACAAGTACGCCGAGTGGCGGCTGTGGG
AGGCAGTGGACGAGCTCAACAAGGCCGACCCGGAGAGGCAGGAGGCCTAA
AGTTCCCGTCTGTGTATTTGTTCGGGCGAAATGAAAGCGCCATCCACGTG
CGTATTCTGGCGAGAGAAAGCTTAGTAACCCGCCTACGTATCGGTGCCGA
AAGAGGCGTTTAACCTCTGCGTATTCCGGCCAATGGAGGCCTACAGATTC
TGTAGCGTGTTCGGGCGAAAGGAAATGCTGGTTCCGTCATCGTACCGGAG
AGGATGGATGACAGTCCAGAGAGGAGATGGTGTAGTTCGGAGGAAGCGAG
GCCGGCACCGTACAAGAAGCCGGTGGGGGGGGGGTATGGGAGACATCCTG
GGGGGCGGGGGCCGGTAGAGCAACGGAGCGGGCCTTCTTTCTAGCACGTT
TTTCGTTCTCTGTGACGACCTACACGCCGAGCGTATCTCGACATGTGCAT
CTTTTTTTTTATTTCGAGGGATGCTTCCTCGGGTGCTTGCATAGGGCAGT
AGGGTGGTACCCTTGATCAAGAATGCTGCTCACGTTCGCGAGGCATACAT
GTGTCGATTGCGACAAGCTGGGTGTTATCCCAGTCCGGATACTAACTAGA
GCGAATTATTGGCTGGTACGGCAGTGTTTTGCCGTGTACTCTGTTCGGAG
CGTTCGTGCCTACGAAGTTGTGTGTTGCGTGATATTTTCGTTCGCGTTTG
CATCTCTGTGTGGAGAACATATTTCAACCTCGTGCACGTATCCTTGTTTT
GCTCGTGTTTACGAGTCGAAGCAACGGCGGCAGAACCGCGTTTTCTCTGT
CTGCTTCGCCACTACAGGAGACGAGGCTTATCAGCTCCTTGTTGCACAGA
TTTATTTCGCCAAGAACCAGATCTCAAGCGCTTTTGATACTATCTCCGTT
ATGTAGGGCTCCAATACCCAAGGGTACATGCGCGAAAGTCTTCGAAACAC
AGGAATGACACCCGAAGAGAATAAGATGTAGAGCGAACTCCAACGTACTC
GTATGGATTGTCTGCAATGGGGCACCTCATCGCCTGTACCACGCTCTGCT
CAGGGAGTACGGAGTTTAATGTGGCGCAAAAAGTTCGTGAGGTGCTGGTT
ACGTTGGTCGCGCGAAGCATCGTTACGGCTAATATTAGGCTGAAGTCACT
TGCCGTTTCGTGCGACGCCCCTCCCGCCGCCCCCACACGTGCGGAAGGAA
TATGGC
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Coding sequence (CDS) from alignment at Scaffold_99:199220..204025-

>EsuBft1123_5a-0001 ID=EsuBft1123_5a-0001|Name=EsuBft1123_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=378bp|location=Sequence derived from alignment at Scaffold_99:199220..204025- (Ectocarpus subulatus male Bft15b)
ATGGCGTTTAGGGCGACGCAAGCGGTGCGAATGGTGGTCAAGAAGACCTC
CACGGGGCTTGTGGGATTAGCTGTGGACGTCAACGCGCGAGCCAACTTCA
TCGCGTTGCAAAAACAGATCCTAGAGAAGATCAAGGTTATCCCGGATCAC
GCGCAATACCGGAAGGACGTGGAGGCTATCAGTGGGTACAGGCTCAAAGT
GGCAATGGAGAACGAGGACGAGGAGACGATAGAGGACAAGATCAACCACG
GGCAGCTGGAGGAGCTCCTTGTGGACGGCAAGAACGAGCTCAAGCTCATC
GACAAGTACGCCGAGTGGCGGCTGTGGGAGGCAGTGGACGAGCTCAACAA
GGCCGACCCGGAGAGGCAGGAGGCCTAA
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