EsuBft1122_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1122_8a-0001
Unique NameEsuBft1122_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_319contigScaffold_319:575117..578341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog15368.BRADI5G22850.1
ProteomeIdEsuBft1122_8
Protein domainsIPR012337
Protein domainsIPR001584
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl35493|Streptophyta
Length2617
Evalue7.46e-10
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M2IR@4447|Liliopsida,3IKX9@38820|Poales
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K20093
EC3.6.4.12
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
BRITEko00000,ko01000,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0015074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1122_8aEsuBft1122_8aEctocarpus subulatus male Bft15bgeneScaffold_319 575117..578341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1122_8a-0001EsuBft1122_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_319 575117..576785 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1122_8a-0001-exonagat-exon-1263Ectocarpus subulatus male Bft15bexonScaffold_319 575117..575876 +
EsuBft1122_8a-0001-exonagat-exon-1261Ectocarpus subulatus male Bft15bexonScaffold_319 576097..577520 +
EsuBft1122_8a-0001-exonagat-exon-1262Ectocarpus subulatus male Bft15bexonScaffold_319 577774..577801 +
EsuBft1122_8a-0001-exonEsuBft1122_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_319 577937..578341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1122_8a-0001-cdsEsuBft1122_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_319 575117..575876 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1122_8a-0001-exonagat-three_prime_utr-1157Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_319 576786..577520 +
EsuBft1122_8a-0001-exonagat-three_prime_utr-1158Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_319 577774..577801 +
EsuBft1122_8a-0001-exonagat-three_prime_utr-1159Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_319 577937..578341 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1122_8a-0001 ID=EsuBft1122_8a-0001|Name=EsuBft1122_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2617bp|location=Sequence derived from alignment at Scaffold_319:575117..578341+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGTGGACAGCTTCTCGCGGTGGATGAAGCTGTACGTGATGAGGCG
CATGTCGGACACCCTCGCCTTCGTCAAGAAGTTCCTCGCCGACGTGAGTG
GCAACGGTGTCCCTCGCTCCTTCCGGATGGACAACGGGGGGGAGTTCGTC
AGCCGCGACTTCATCCTTCTGCGACAACGCCGGCATCCGCCGCACGTAAA
CANGATGAGGCGCAAGTCGGACACCCTCGCCTTCGTCAAGAAGTTCCTCG
CCGACATGAGTGGCACCGGTGTCCCTCGCTCTTTCCGGATGGACAACGGG
GGGGAGTTCATCGGACGCGACTTCATCGCCTTCTGTGACAACGCCGGCAT
CCGCCGTACGTACACGGCGCCGGGCACCCCGCAGCAGAATGGTCCGGCGG
AGTGTGCGATCTGGCGCGTGAACAAGGCCGGCCACGCCGCTCGACTCGAG
GCACGCCGCCTGTTCCCCAAGGTGGACTTCACCCGCGTCCCCGGATTCGG
ACGCGATGGCGAGCGGCTTTGGCTAGAGTCGTGTCACTGGGCTGCCGGCG
GCTCCAACCGTTCTCCGACCAAGGCAAACGTCGGGTACAAGTCGCCGCAC
GAGCTCTTCACCGGTCGCCCGCCCCCGGTCCAGATCGTCCCGTTCTTAGA
GCCGGGGTATATGCGTGTGATGCGCGCGCGGAGATGGATCCCCAGGCAGT
GCTGTGCTGCTACCTCAACAACGGCGACGACCATCACGAGTCGGCAGTCA
AGAGCCTCAAGCGCCGCCGGCAACTTCCACACCACCATCGCCGGCGGCGC
CGTCTACCGCAGCCACACCATCGCCACCGGTGCGACGCCGCTCGCCGCCG
CGCCACCGTTCACCACCACCGCGCCGCCTGCAACGCCGTTCACCGTCGTG
CCACCGTCTCCCGCCGTCGCGCCGCCCGGTGCCGCGCCATCGACCAACAT
GCCGCCGCTCACTACGAGGACCATCCGTGAACTGGACGTGGGGCGCGGGG
ACATGAGGGTTTCTGGGCGCACGAGGGCAGCCGCTAAGGACCAAGGGGGG
GGGCGGGCGTCGTCAATGCCGCCCCTCTCTGCCAGGGCCAATCGAGAGCT
GGACTTGAGACGAGAGACGCGGGTGCCAGGGAGATTGGGGGGTCGGGGAG
TGCGTTTCCAGGACGGGGGGGGCGAGCGGTCGACGTCACCGGCGGGAGCG
GCGACGGTCCCGCCCACCGCTTTGGGCTTGTATCCCTGCAGGACAAGGCA
ACGCTCCTGTCGACTCTCACCACTCGCAGCGTCGTCGATAGGGGGAGAAA
GGAGATCACTAGTTCAGTCGGAGGGAGTGAAGGAGCGGAGCCGGGGGGGC
GAGAGCGGGGGGGCACAAAAACAGAAGGACTGCGTGAAGAAGTCCCATTT
GCGTGCGCCACCTTGCTTGCCTCCCGCGAGGACATTGATCGCACGATGAG
GGATTTAAATCCCCCCGAAGTAGCACCGGACTTTCCACGTTGCTATGCCA
ACGACTTGCGCGTGCCCAAAACGTATAGGGAGGCTGTGTCCTCTGAGTAT
GCTGACTTGTAGGTAGTCTCTGTAGGGAGGGAGTTCAGAGGTCTGATGGA
GGCTGGTACCTTTGAGGAAGTGATGTAGCAACCAGAGAGTGTTATCAAGG
CATTCACACGGGAGGTGTTTGGTTTGTTTGGGTTTTATTCAGTGTCTGGC
GGATACGTGTGTGTTTCGGTTGATCGAGGAGGGAAGAGTGGTAGTGACTC
TGGTAGTACATGTGGACGATATATTTTTGATTGGAGAGGAGGAGAGGTGT
GAACAATTTGTGAGGGACCTCAACACCATGGTACCGGTGAAGAATCTTGG
TGTCTTGAGGTGGTACTCTGGATGTTTTTATGAGAGGGATCGGGATGCAG
GGACTTTGAAGATCTCGCAGCAGACGTACGCTGAAGAGTTGGGGATGGAG
TTTGGGGTAGATTGCGGGAAGAAAATTCCTCGTCCTGTAGGGTTGAAGCT
TTCAGAGTTTGACCAGGACGAGGAAGTGGTATCATGGCCTTTCCGCGAGC
TGATAAGATTACTGATGTGGCTGACAGCGCAAGCGAGGCCAGATATCGCG
AATGCAGTGAGAGCGGTAGCACAGTACTGTGCTTCTCCCAAAGAAATACA
TTGGAGAGCAGGTCTTGGTACTTTGGGGTATGTGGTGTGGCGTTTCATGT
TGCCAGAAGCAGGAAGGAGATTTCGATTTTTCGCGCGGAATCAACGTATC
AACATGCTGACTTCCTTACGAAGGCACTTCACGTCGGAGATTTTGAGTTC
ATCGTAATTTCGTGATGAGTGTGGGACCAGGAACGGTAGATTTGGATTTA
TTTGTGTTTGATCAAAGAACTAGGGTGGCATTGTTTTACATTTTGGCCTA
TGGTCTTCTCAATGAAGGATGTTCTAGGCTGGGGGGCACTTGGATCGCTA
TGATTATCGAAGAACTACAATTGGAATGATCGGGGATGGAAATATATTTC
TAGCCCAGAAGGCTATTGATGAAGATTTGAGTTGTGTTTTGGATTATTTT
CTTGTGTTCCGGAAATACTGAAACATCATGAAGACATGGTATAGTCACAA
GCAGGGGGGCTGATAGA
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protein sequence of EsuBft1122_8a-0001

>EsuBft1122_8 ID=EsuBft1122_8|Name=EsuBft1122_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=482bp
MFVDSFSRWMKLYVMRRMSDTLAFVKKFLADVSGNGVPRSFRMDNGGEFV
SRDFILLRQRRHPPHVNXMRRKSDTLAFVKKFLADMSGTGVPRSFRMDNG
GEFIGRDFIAFCDNAGIRRTYTAPGTPQQNGPAECAIWRVNKAGHAARLE
ARRLFPKVDFTRVPGFGRDGERLWLESCHWAAGGSNRSPTKANVGYKSPH
ELFTGRPPPVQIVPFLEPGYMRVMRARRWIPRQCCAATSTTATTITSRQS
RASSAAGNFHTTIAGGAVYRSHTIATGATPLAAAPPFTTTAPPATPFTVV
PPSPAVAPPGAAPSTNMPPLTTRTIRELDVGRGDMRVSGRTRAAAKDQGG
GRASSMPPLSARANRELDLRRETRVPGRLGGRGVRFQDGGGERSTSPAGA
ATVPPTALGLYPCRTRQRSCRLSPLAASSIGGERRSLVQSEGVKERSRGG
ESGGAQKQKDCVKKSHLRAPPCLPPARTLIAR
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mRNA from alignment at Scaffold_319:575117..578341+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1122_8a-0001 ID=EsuBft1122_8a-0001|Name=EsuBft1122_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3225bp|location=Sequence derived from alignment at Scaffold_319:575117..578341+ (Ectocarpus subulatus male Bft15b)
ATGTTCGTGGACAGCTTCTCGCGGTGGATGAAGCTGTACGTGATGAGGCG
CATGTCGGACACCCTCGCCTTCGTCAAGAAGTTCCTCGCCGACGTGAGTG
GCAACGGTGTCCCTCGCTCCTTCCGGATGGACAACGGGGGGGAGTTCGTC
AGCCGCGACTTCATCCTTCTGCGACAACGCCGGCATCCGCCGCACGTAAA
CANGATGAGGCGCAAGTCGGACACCCTCGCCTTCGTCAAGAAGTTCCTCG
CCGACATGAGTGGCACCGGTGTCCCTCGCTCTTTCCGGATGGACAACGGG
GGGGAGTTCATCGGACGCGACTTCATCGCCTTCTGTGACAACGCCGGCAT
CCGCCGTACGTACACGGCGCCGGGCACCCCGCAGCAGAATGGTCCGGCGG
AGTGTGCGATCTGGCGCGTGAACAAGGCCGGCCACGCCGCTCGACTCGAG
GCACGCCGCCTGTTCCCCAAGGTGGACTTCACCCGCGTCCCCGGATTCGG
ACGCGATGGCGAGCGGCTTTGGCTAGAGTCGTGTCACTGGGCTGCCGGCG
GCTCCAACCGTTCTCCGACCAAGGCAAACGTCGGGTACAAGTCGCCGCAC
GAGCTCTTCACCGGTCGCCCGCCCCCGGTCCAGATCGTCCCGTTCTTAGA
GCCGGGGTATATGCGTGTGATGCGCGCGCGGAGATGGATCCCCAGGCAGT
GCTGTGCTGCTACCTCAACAACGGCGACGACCATCACGAGTCGGCAGTCA
AGAGCCTCAAGTTCGCGACGGGGCGCGTGTGCATGACGATCAGCGTCGTG
TGGGTCTCCGACCGCGTGCCGTTGCTGACCCCGCCGCTGGAGATGCCGGC
GCCGGCGGGCGAGGGGGGGGATTCGGATGTCGCCGCCGCACCGTTTCTAA
TTGAGTACATTTCAAAGCCTCTTTTACCCCCCTCACCGTTCGCCCGATAT
CCCACTTCACCCGCTGCCATATCCTCCCAGGCGCCGCCGGCAACTTCCAC
ACCACCATCGCCGGCGGCGCCGTCTACCGCAGCCACACCATCGCCACCGG
TGCGACGCCGCTCGCCGCCGCGCCACCGTTCACCACCACCGCGCCGCCTG
CAACGCCGTTCACCGTCGTGCCACCGTCTCCCGCCGTCGCGCCGCCCGGT
GCCGCGCCATCGACCAACATGCCGCCGCTCACTACGAGGACCATCCGTGA
ACTGGACGTGGGGCGCGGGGACATGAGGGTTTCTGGGCGCACGAGGGCAG
CCGCTAAGGACCAAGGGGGGGGGCGGGCGTCGTCAATGCCGCCCCTCTCT
GCCAGGGCCAATCGAGAGCTGGACTTGAGACGAGAGACGCGGGTGCCAGG
GAGATTGGGGGGTCGGGGAGTGCGTTTCCAGGACGGGGGGGGCGAGCGGT
CGACGTCACCGGCGGGAGCGGCGACGGTCCCGCCCACCGCTTTGGGCTTG
TATCCCTGCAGGACAAGGCAACGCTCCTGTCGACTCTCACCACTCGCAGC
GTCGTCGATAGGGGGAGAAAGGAGATCACTAGTTCAGTCGGAGGGAGTGA
AGGAGCGGAGCCGGGGGGGCGAGAGCGGGGGGGCACAAAAACAGAAGGAC
TGCGTGAAGAAGTCCCATTTGCGTGCGCCACCTTGCTTGCCTCCCGCGAG
GACATTGATCGCACGATGAGGGATTTAAATCCCCCCGAAGTAGCACCGGA
CTTTCCACGTTGCTATGCCAACGACTTGCGCGTGCCCAAAACGTATAGGG
AGGCTGTGTCCTCTGAGTATGCTGACTTGTAGGTAGTCTCTGTAGGGAGG
GAGTTCAGAGGTCTGATGGAGGCTGGTACCTTTGAGGAAGTGATGTAGCA
ACCAGAGAGTGTTATCAAGGCATTCACACGGGAGGTGTTTGGTTTGTTTG
GGTTTTATTCAGTGTCTGGCGGATACGTGTGTGTTTCGGTTGATCGAGGA
GGGAAGAGTGGTAGTGACTCTGGTAGTACATGTGGACGATATATTTTTGA
TTGGAGAGGAGGAGAGGTGTGAACAATTTGTGAGGGACCTCAACACCATG
GTACCGGTGAAGAATCTTGGTGTCTTGAGGTGGTACTCTGGATGTTTTTA
TGAGAGGGATCGGGATGCAGGGACTTTGAAGATCTCGCAGCAGACGTACG
CTGAAGAGTTGGGGATGGAGTTTGGGGTAGATTGCGGGAAGAAAATTCCT
CGTCCTGTAGGGTTGAAGCTTTCAGAGTTTGACCAGGACGAGGAAGTGGT
ATCATGGCCTTTCCGCGAGCTGATAAGATTACTGATGTGGCTGACAGCGC
AAGCGAGGCCAGATATCGCGAATGCAGTGAGAGCGGTAGCACAGTACTGT
GCTTCTCCCAAAGAAATACATTGGAGAGCAGGTCTTGGTACTTTGGGGTA
TGTGGTAAGAAAATAGTGACTTGGGGGTTACATTCAGGAGGGGTAGTGTA
GCAGGGTTGAGCATGGAGGTGTTCGCAGACGCAGAGTCTGCAATTAAGGC
TGCCGATAGGAGGTCTGTGTCAGGAGGATTGGTGATGTGTGTGTGGGGAT
GTATTTCTTGGTTTTCAAGGACGCAGAAGTGCGTTACGTTGCGCACGACA
GAGGCGGAGTATGTTTCCCGTGCGGATGTGATGAAGGAAGTGTTGTTTCT
GAGGCAGGTGTGGCGTTTCATGTTGCCAGAAGCAGGTATGTATGTATGCC
GTGTATTCCGGTGCTCGATGATAACCAGGGGGCTATTCAGTTGGCGCAGA
ACTCGATTAGCAACAGTAACTCGAAGCACATCGACATAAGGCACCACTTT
ATGAGGGAACTGGTAGGCAGGAAGGAGATTTCGATTTTTCGCGCGGAATC
AACGTATCAACATGCTGACTTCCTTACGAAGGCACTTCACGTCGGAGATT
TTGAGTTCATCGTAATTTCGTGATGAGTGTGGGACCAGGAACGGTAGATT
TGGATTTATTTGTGTTTGATCAAAGAACTAGGGTGGCATTGTTTTACATT
TTGGCCTATGGTCTTCTCAATGAAGGATGTTCTAGGCTGGGGGGCACTTG
GATCGCTATGATTATCGAAGAACTACAATTGGAATGATCGGGGATGGAAA
TATATTTCTAGCCCAGAAGGCTATTGATGAAGATTTGAGTTGTGTTTTGG
ATTATTTTCTTGTGTTCCGGAAATACTGAAACATCATGAAGACATGGTAT
AGTCACAAGCAGGGGGGCTGATAGA
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Coding sequence (CDS) from alignment at Scaffold_319:575117..578341+

>EsuBft1122_8a-0001 ID=EsuBft1122_8a-0001|Name=EsuBft1122_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1449bp|location=Sequence derived from alignment at Scaffold_319:575117..578341+ (Ectocarpus subulatus male Bft15b)
ATGTTCGTGGACAGCTTCTCGCGGTGGATGAAGCTGTACGTGATGAGGCG
CATGTCGGACACCCTCGCCTTCGTCAAGAAGTTCCTCGCCGACGTGAGTG
GCAACGGTGTCCCTCGCTCCTTCCGGATGGACAACGGGGGGGAGTTCGTC
AGCCGCGACTTCATCCTTCTGCGACAACGCCGGCATCCGCCGCACGTAAA
CANGATGAGGCGCAAGTCGGACACCCTCGCCTTCGTCAAGAAGTTCCTCG
CCGACATGAGTGGCACCGGTGTCCCTCGCTCTTTCCGGATGGACAACGGG
GGGGAGTTCATCGGACGCGACTTCATCGCCTTCTGTGACAACGCCGGCAT
CCGCCGTACGTACACGGCGCCGGGCACCCCGCAGCAGAATGGTCCGGCGG
AGTGTGCGATCTGGCGCGTGAACAAGGCCGGCCACGCCGCTCGACTCGAG
GCACGCCGCCTGTTCCCCAAGGTGGACTTCACCCGCGTCCCCGGATTCGG
ACGCGATGGCGAGCGGCTTTGGCTAGAGTCGTGTCACTGGGCTGCCGGCG
GCTCCAACCGTTCTCCGACCAAGGCAAACGTCGGGTACAAGTCGCCGCAC
GAGCTCTTCACCGGTCGCCCGCCCCCGGTCCAGATCGTCCCGTTCTTAGA
GCCGGGGTATATGCGTGTGATGCGCGCGCGGAGATGGATCCCCAGGCAGT
GCTGTGCTGCTACCTCAACAACGGCGACGACCATCACGAGTCGGCAGTCA
AGAGCCTCAAGCGCCGCCGGCAACTTCCACACCACCATCGCCGGCGGCGC
CGTCTACCGCAGCCACACCATCGCCACCGGTGCGACGCCGCTCGCCGCCG
CGCCACCGTTCACCACCACCGCGCCGCCTGCAACGCCGTTCACCGTCGTG
CCACCGTCTCCCGCCGTCGCGCCGCCCGGTGCCGCGCCATCGACCAACAT
GCCGCCGCTCACTACGAGGACCATCCGTGAACTGGACGTGGGGCGCGGGG
ACATGAGGGTTTCTGGGCGCACGAGGGCAGCCGCTAAGGACCAAGGGGGG
GGGCGGGCGTCGTCAATGCCGCCCCTCTCTGCCAGGGCCAATCGAGAGCT
GGACTTGAGACGAGAGACGCGGGTGCCAGGGAGATTGGGGGGTCGGGGAG
TGCGTTTCCAGGACGGGGGGGGCGAGCGGTCGACGTCACCGGCGGGAGCG
GCGACGGTCCCGCCCACCGCTTTGGGCTTGTATCCCTGCAGGACAAGGCA
ACGCTCCTGTCGACTCTCACCACTCGCAGCGTCGTCGATAGGGGGAGAAA
GGAGATCACTAGTTCAGTCGGAGGGAGTGAAGGAGCGGAGCCGGGGGGGC
GAGAGCGGGGGGGCACAAAAACAGAAGGACTGCGTGAAGAAGTCCCATTT
GCGTGCGCCACCTTGCTTGCCTCCCGCGAGGACATTGATCGCACGATGA
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