EsuBft1122_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1122_7a-0001
Unique NameEsuBft1122_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_319contigScaffold_319:580652..583417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LKU5
ProteomeIdEsuBft1122_7
Protein domainsIPR012317
Protein domainsSSF56399
Protein domainsPTHR31681
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length69
Hectar predicted targeting categoryother localisation
Evalue8.63e-98
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K06972
Descriptiondetermination of stomach left/right asymmetry
COG categoryC
BRITEko00000,ko01000,ko01002
Cross References
External references for this mRNA
DatabaseAccession
GO0003950
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1122_7aEsuBft1122_7aEctocarpus subulatus male Bft15bgeneScaffold_319 580652..583417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1122_7a-0001EsuBft1122_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_319 580652..583417 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1122_7a-0001-exonagat-exon-1258Ectocarpus subulatus male Bft15bexonScaffold_319 580652..580744 -
EsuBft1122_7a-0001-exonagat-exon-1257Ectocarpus subulatus male Bft15bexonScaffold_319 581744..581878 -
EsuBft1122_7a-0001-exonagat-exon-1260Ectocarpus subulatus male Bft15bexonScaffold_319 582343..582528 -
EsuBft1122_7a-0001-exonEsuBft1122_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_319 582729..582845 -
EsuBft1122_7a-0001-exonagat-exon-1259Ectocarpus subulatus male Bft15bexonScaffold_319 583250..583417 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1122_7a-0001-cdsEsuBft1122_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_319 580652..580744 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1122_7a-0001 ID=EsuBft1122_7a-0001|Name=EsuBft1122_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=699bp|location=Sequence derived from alignment at Scaffold_319:580652..583417- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTATCGCGACAACAGGTGTTGCCTGTGGGGAGCAGCGAAAGTGTCTT
GCAAATGCTCGAAGAGAATAGCAGGGAGTACACTGCTCTCCGCGGTCTTT
TCAACGCTCGGTGGATGAAACCACGGCCGGCAAAGGGTGTTTCTATCGAG
CGCGTCTACAGCATCCAGGTTTCTCGTGAGATGCGTGAGAAGCACGAGCG
GTACAAAGGAATGTTCGGCAATCTGTGCCAACGCTTTCATGGCACCTCCT
GCAACGAAGGGTGCAACTTCATGGTCGATCCACAGGGCGGACAAGCCCCG
TGCGGGAAGAGCAGCTGCAGCGTCTGCAACATCTGCAAGCTAGGCTTCAA
GCTGGGAGCCAACGTGGCCGGCACGGCCCGGGCAACCGGTGTCCCGCTTC
GGTACGGGGAGGGCATCTACTTGACAAGCGTGTCCGGAAAGGCAAACGAC
TACGCCTCGCGCTCGGCGAAGAAAATCGGTATCGCCTCGGAGCTGAGGTG
CATGTTCGTCGCCAGCGTCGCCGTGGGAAGAGCGTTCAAGACCAAGAGTA
CTAGGCTCCCGGCAAACCAGTGCCCGCCTCCTGGCTATCAATCTGTGGTG
GGAGAGGTGGGCCAAGGGCTGAACTTCGACGAGTTCGTGGTGTACAACGA
GGAGGCCGCTCTGCCAACTCACCTCATCGTGTATGCTCTTCGGCACTGA
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protein sequence of EsuBft1122_7a-0001

>EsuBft1122_7 ID=EsuBft1122_7|Name=EsuBft1122_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=232bp
MVSRQQVLPVGSSESVLQMLEENSREYTALRGLFNARWMKPRPAKGVSIE
RVYSIQVSREMREKHERYKGMFGNLCQRFHGTSCNEGCNFMVDPQGGQAP
CGKSSCSVCNICKLGFKLGANVAGTARATGVPLRYGEGIYLTSVSGKAND
YASRSAKKIGIASELRCMFVASVAVGRAFKTKSTRLPANQCPPPGYQSVV
GEVGQGLNFDEFVVYNEEAALPTHLIVYALRH
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mRNA from alignment at Scaffold_319:580652..583417-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1122_7a-0001 ID=EsuBft1122_7a-0001|Name=EsuBft1122_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2766bp|location=Sequence derived from alignment at Scaffold_319:580652..583417- (Ectocarpus subulatus male Bft15b)
ATGGTATCGCGACAACAGGTGTTGCCTGTGGGGAGCAGCGAAAGTGTCTT
GCAAATGCTCGAAGAGAATAGCAGGGAGTACACTGCTCTCCGCGGTCTTT
TCAACGCTCGGTGGATGAAACCACGGCCGGCAAAGGGTGTTTCTATCGAG
CGCGTCTACAGCATCCAGGTGCGTTGACCCCAGTATATGTCGGTTATTTG
CGATTACAGAACCGCATATGTGTATGCATGAGTCGCGACAACAATTCGTG
TAGTCGATAGAACGCCAGAAGTTGGTGCAAGCAGTATCCTGCCTACGCTA
TTTTTGGACAAACAGCACGTGACGGACGCTCTTCGAAATGGTCCACGGAA
AAAATACTGATACAATTTCGTTGCCACGCGCCTCGCCCCACCATGTCAAA
ATGGGCAGATATGTAAGCAGTCATTCCAGCAACCACTCCCCTAGCCGTGC
TACAAAGTGGCGAAAGGCAAGAGTAGGTTAGTCTACGTTTCAGACATGAG
CTTTCCTGTACTCACTCGTCTTGCTGCCATTCGTTGATCAGCTTTAACCC
CCCTGTCCGTTGCCCTCACAAGGTTTCTCGTGAGATGCGTGAGAAGCACG
AGCGGTACAAAGGAATGTTCGGCAATCTGTGCCAACGCTTTCATGGCACC
TCCTGCAACGAAGGGTGCAACTTCATGGTCGATCCACAGGTGAACAGCAT
CGATGTAGACTGCTAGTGTAACGCCCACTTGAAGCGCGTCGCAGGAATAG
ATTGGCCCATTCACTTTTTCCCGATCGGTTCAAACAACCACGCTCCGGCG
CTCGGGTCTCCTGTATTCTGCCCTCCTTGTGGGCGTAGCGTGTCGTCAGT
CAAACCTTGTCCACTCGTTCGGGGTCTATTGACGTGCAGGGCGGACAAGC
CCCGTGCGGGAAGAGCAGCTGCAGCGTCTGCAACATCTGCAAGCTAGGCT
TCAAGCTGGGAGCCAACGTGGCCGGCACGGCCCGGGCAACCGGTGTCCCG
CTTCGGTACGGGGAGGGCATCTACTTGACAAGCGTGTCCGGAAAGGCAAA
CGACTACGCCTCGCGCTCGGCGAAGGTGCGCATGATCATGGGGAATGAGG
CTTTCCTCGCGACCCACCAGTTTGTTTTGCTCAGCACGGGGTGACACGCA
CACCAGGCCAGGCAGGAGCCCTCGCCCAATCCAGTGCTGATATTACATGA
CCCTCGATATGGAGACAGAATACAACAGAGAATTGCGGTGTAGTTGCCTC
GCAGCAGGCAACACAGGCTGCTTCAACGAACACTTCCCGCGTATCATCCA
TAGTCAATACCTTCTGAAGTAGTAGGTCAGGGACCGAGTTTACCTGTCGG
GGTGGAGAGAGTATCCAACAACCTCAGGAAGCCGCTCGTCAGTCCATTGA
CGGCCTGGTCAAAGAGCAAACGTTACGAAATGATACGTCCTTCTCGCCGC
CGCATGTATGTATGTACTCGCGGGTGGTCCCTTTTTGTCTCACTCGCGCC
CGGCCCTCTCTCTCCTCTTCGAATTGATCATCATATCAGAAAATCGGTAT
CGCCTCGGAGCTGAGGTGCATGTTCGTCGCCAGCGTCGCCGTGGGAAGAG
CGTTCAAGACCAAGAGTACTAGGCTCCCGGCAAACCAGTGCCCGCCTCCT
GGCTATCAATCTGTGGTGGGAGAGGTATGCATTCCCCATCGAGTGGAGGA
AGTCAACTCTCCGTACAGACTACTGTAGACTCAGAAACAATGTCATTGCC
ATTGGCGTGGTTTCAGGTGCTACAATTCAGACTTTGGCATCGGCCGCCTC
GACGTGAATGTCCCCAAACAAACCTGAGAAACGCGTACTGCCCCCCTTTC
CGTGGCTCAAAACTACTTGTCCTCCGTCCCGTTACGTTCAAAGCAAGAGC
TTGTCGTAGTCGGGAGTCTCTTCGTACTCCAAGCCGTACACAACCGTGGT
TATCCAGGCTGCAGCGCTTTCATTCTCGCGCTGTTTCGCGGTTGCGGGAG
CCGGGGTTACCCTCCTGGTCACAGAAAGCGGTGTTTCTGTGGGTGTACTA
AATAGTGGTTCACACAATATGACCGTATACGACACAAGATAACACACTCC
CTGGACCGATCTTCAAAGCTCGGTTACGCGACGGCGAAGAGGAGGCACAG
ATACAATCTCAGAGAGCTCTCAATGACATGGCTTCAACGCCGCCGTTTTC
GGCGCTGTGACTCGTTCTGCTGTTGAGAAATTGAGCCTCGAAAATCGGTC
CGGGGGGTGTGTTATCTTGTGTCGTATTCGGTAGTCTACTGGAAGAAATG
CACAGTAGATCTGTCATGGCAGCATCGACGTCAGAATGTGTAAGTTGGAA
CTGCCAACGTCTCGCTCGGCGTGGTCTCCCAGCGTTGAGCGGAAATACAC
GAGATGACATGCATACACGAACTCTTAACGAGGTCACTCCAAGACAAACG
CTGTAGGTCAAACTAGGGTGATTTGGCGCTCTGCATTTTCCGGCCGGTCC
TGCTTTTTGCGGTACACGTTCAAGCATCACGAGGTGTAGCTGGAGGTGGC
GTCGGTTGATTTGGATTCCATGACTTGCGTGTTGTTTATCGCTGAACATC
TGAGGTAGATGACATAGCAGCCGCAACGTAAGCTCTAATGTCACCCGTCC
AACCTCGGTCATCGCTCGGTAAGGTGGGCCAAGGGCTGAACTTCGACGAG
TTCGTGGTGTACAACGAGGAGGCCGCTCTGCCAACTCACCTCATCGTGTA
TGCTCTTCGGCACTGA
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Coding sequence (CDS) from alignment at Scaffold_319:580652..583417-

>EsuBft1122_7a-0001 ID=EsuBft1122_7a-0001|Name=EsuBft1122_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=699bp|location=Sequence derived from alignment at Scaffold_319:580652..583417- (Ectocarpus subulatus male Bft15b)
ATGGTATCGCGACAACAGGTGTTGCCTGTGGGGAGCAGCGAAAGTGTCTT
GCAAATGCTCGAAGAGAATAGCAGGGAGTACACTGCTCTCCGCGGTCTTT
TCAACGCTCGGTGGATGAAACCACGGCCGGCAAAGGGTGTTTCTATCGAG
CGCGTCTACAGCATCCAGGTTTCTCGTGAGATGCGTGAGAAGCACGAGCG
GTACAAAGGAATGTTCGGCAATCTGTGCCAACGCTTTCATGGCACCTCCT
GCAACGAAGGGTGCAACTTCATGGTCGATCCACAGGGCGGACAAGCCCCG
TGCGGGAAGAGCAGCTGCAGCGTCTGCAACATCTGCAAGCTAGGCTTCAA
GCTGGGAGCCAACGTGGCCGGCACGGCCCGGGCAACCGGTGTCCCGCTTC
GGTACGGGGAGGGCATCTACTTGACAAGCGTGTCCGGAAAGGCAAACGAC
TACGCCTCGCGCTCGGCGAAGAAAATCGGTATCGCCTCGGAGCTGAGGTG
CATGTTCGTCGCCAGCGTCGCCGTGGGAAGAGCGTTCAAGACCAAGAGTA
CTAGGCTCCCGGCAAACCAGTGCCCGCCTCCTGGCTATCAATCTGTGGTG
GGAGAGGTGGGCCAAGGGCTGAACTTCGACGAGTTCGTGGTGTACAACGA
GGAGGCCGCTCTGCCAACTCACCTCATCGTGTATGCTCTTCGGCACTGA
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