EsuBft1122_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1122_6a-0001
Unique NameEsuBft1122_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_319contigScaffold_319:599834..601044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1122_6
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length114
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1122_6aEsuBft1122_6aEctocarpus subulatus male Bft15bgeneScaffold_319 599834..601044 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1122_6a-0001-exonagat-exon-1256Ectocarpus subulatus male Bft15bexonScaffold_319 599834..599841 +
EsuBft1122_6a-0001-exonEsuBft1122_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_319 599905..601044 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1122_6a-0001-cdsEsuBft1122_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_319 599834..599841 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1122_6a-0001-exonagat-three_prime_utr-1156Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_319 600668..601044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1122_6a-0001EsuBft1122_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_319 599834..600667 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1122_6a-0001 ID=EsuBft1122_6a-0001|Name=EsuBft1122_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1148bp|location=Sequence derived from alignment at Scaffold_319:599834..601044+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAATCCTCGGCAAGCTAAACGCCGTGGAGGAAAGGAATTTCAAGCG
ACAGCGGCTGGCAGGTTCGGACGCGACCCGCGCAGGCTTCACGCTAGAGT
CGACGCTTTCCAGGCGCGAGAGACGTTCGGTGGCCCGGGGCTGGAGCAAG
AGGGAAGGAAAGCTTCGACGGGACTTCGACAAGCGGGGCTCCTATCTCGG
CAACCGGATCTACGAGCTGACATCGCAGATCGGTAGCAAAGAGCAGCACA
TTCGANAGCACATTCGGCGTATTGAGGATGCTATGGCGGAGCAAGACCTC
GCGAGTCTTCTCGCCCCTCTCCCCCCCTCGCCCATCGAAGGAAATGCAGA
GGTGGACGCACGGGCGTGTACCGAGGGCGAGGACAACCAGTACAAGGAGG
AAGTGTCCGCCACCCAAGCAAACCGCTTGTGGTATCAAGGGCACTCGGCG
TTGACGGTGTTGAAGGAGGAGCGGAAGCGCGACCTGCGGCAACTGCAACT
CACGCAGCAGGCGAAGAGCTTGTCCGATGAGTCGTACACGACGATCCCAG
CGGTCAAGGCAGCAGAGGCCAAACGGTTTGAGCTGTTGAACGAGGCCTCG
CGTCTTCGACACGAGTCGTCGCTCTTGCGGATCGCGGCGAGAGTAAACTC
CGCTGGCTCACGGGTTTACGCGGCATCGACAATCCTGGGGTGGCTCGGGG
ACTTTCGGGGGCACGGTGGTTTCAAGCGAGATTCAAGGGGGGTGCACGAG
AGGGACTGGATCATGCCGTAAAAGTCTGTTTTTTTTTTCCGGTCGAGTTG
AGACATATTTGTTCGAGTTTGTGCACGCGCATGTTGGCGTCGTGAGCTTT
TAATACATGTTTCACATCATCACGACCAGTGGGTACAACTCATGTACGTC
ATGGGCTGGTAGGCAGCGCCAGTGTGGCTCCTGCCAACTACACCGCTTTC
TCACACGTCTCTACGGTCCCTAGACCCCTCATTTTCCTATCCAAATGGTG
TGCCCCTGCACCCAGGTTCTGAGGCCAGAACGAAATTCTGGATTTCCCGC
GCGGTTTTTTCGAATGAGAACCTGAAATTTTGAGACGGCATCTGCATGAG
TACAACAAAAACAATTGCCACTGCGCCATTTGTTTTTTTTTTAAAGTC
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protein sequence of EsuBft1122_6a-0001

>EsuBft1122_6 ID=EsuBft1122_6|Name=EsuBft1122_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=256bp
MKILGKLNAVEERNFKRQRLAGSDATRAGFTLESTLSRRERRSVARGWSK
REGKLRRDFDKRGSYLGNRIYELTSQIGSKEQHIRXHIRRIEDAMAEQDL
ASLLAPLPPSPIEGNAEVDARACTEGEDNQYKEEVSATQANRLWYQGHSA
LTVLKEERKRDLRQLQLTQQAKSLSDESYTTIPAVKAAEAKRFELLNEAS
RLRHESSLLRIAARVNSAGSRVYAASTILGWLGDFRGHGGFKRDSRGVHE
RDWIMP
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mRNA from alignment at Scaffold_319:599834..601044+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1122_6a-0001 ID=EsuBft1122_6a-0001|Name=EsuBft1122_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1211bp|location=Sequence derived from alignment at Scaffold_319:599834..601044+ (Ectocarpus subulatus male Bft15b)
ATGAAAATGTTTCACATGAACTGACGCCTCGACCCGAAATCCCAATTTCA
CACAGGAAAATCGCGCAACAGCCTCGGCAAGCTAAACGCCGTGGAGGAAA
GGAATTTCAAGCGACAGCGGCTGGCAGGTTCGGACGCGACCCGCGCAGGC
TTCACGCTAGAGTCGACGCTTTCCAGGCGCGAGAGACGTTCGGTGGCCCG
GGGCTGGAGCAAGAGGGAAGGAAAGCTTCGACGGGACTTCGACAAGCGGG
GCTCCTATCTCGGCAACCGGATCTACGAGCTGACATCGCAGATCGGTAGC
AAAGAGCAGCACATTCGANAGCACATTCGGCGTATTGAGGATGCTATGGC
GGAGCAAGACCTCGCGAGTCTTCTCGCCCCTCTCCCCCCCTCGCCCATCG
AAGGAAATGCAGAGGTGGACGCACGGGCGTGTACCGAGGGCGAGGACAAC
CAGTACAAGGAGGAAGTGTCCGCCACCCAAGCAAACCGCTTGTGGTATCA
AGGGCACTCGGCGTTGACGGTGTTGAAGGAGGAGCGGAAGCGCGACCTGC
GGCAACTGCAACTCACGCAGCAGGCGAAGAGCTTGTCCGATGAGTCGTAC
ACGACGATCCCAGCGGTCAAGGCAGCAGAGGCCAAACGGTTTGAGCTGTT
GAACGAGGCCTCGCGTCTTCGACACGAGTCGTCGCTCTTGCGGATCGCGG
CGAGAGTAAACTCCGCTGGCTCACGGGTTTACGCGGCATCGACAATCCTG
GGGTGGCTCGGGGACTTTCGGGGGCACGGTGGTTTCAAGCGAGATTCAAG
GGGGGTGCACGAGAGGGACTGGATCATGCCGTAAAAGTCTGTTTTTTTTT
TCCGGTCGAGTTGAGACATATTTGTTCGAGTTTGTGCACGCGCATGTTGG
CGTCGTGAGCTTTTAATACATGTTTCACATCATCACGACCAGTGGGTACA
ACTCATGTACGTCATGGGCTGGTAGGCAGCGCCAGTGTGGCTCCTGCCAA
CTACACCGCTTTCTCACACGTCTCTACGGTCCCTAGACCCCTCATTTTCC
TATCCAAATGGTGTGCCCCTGCACCCAGGTTCTGAGGCCAGAACGAAATT
CTGGATTTCCCGCGCGGTTTTTTCGAATGAGAACCTGAAATTTTGAGACG
GCATCTGCATGAGTACAACAAAAACAATTGCCACTGCGCCATTTGTTTTT
TTTTTAAAGTC
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Coding sequence (CDS) from alignment at Scaffold_319:599834..601044+

>EsuBft1122_6a-0001 ID=EsuBft1122_6a-0001|Name=EsuBft1122_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=771bp|location=Sequence derived from alignment at Scaffold_319:599834..601044+ (Ectocarpus subulatus male Bft15b)
ATGAAAATCCTCGGCAAGCTAAACGCCGTGGAGGAAAGGAATTTCAAGCG
ACAGCGGCTGGCAGGTTCGGACGCGACCCGCGCAGGCTTCACGCTAGAGT
CGACGCTTTCCAGGCGCGAGAGACGTTCGGTGGCCCGGGGCTGGAGCAAG
AGGGAAGGAAAGCTTCGACGGGACTTCGACAAGCGGGGCTCCTATCTCGG
CAACCGGATCTACGAGCTGACATCGCAGATCGGTAGCAAAGAGCAGCACA
TTCGANAGCACATTCGGCGTATTGAGGATGCTATGGCGGAGCAAGACCTC
GCGAGTCTTCTCGCCCCTCTCCCCCCCTCGCCCATCGAAGGAAATGCAGA
GGTGGACGCACGGGCGTGTACCGAGGGCGAGGACAACCAGTACAAGGAGG
AAGTGTCCGCCACCCAAGCAAACCGCTTGTGGTATCAAGGGCACTCGGCG
TTGACGGTGTTGAAGGAGGAGCGGAAGCGCGACCTGCGGCAACTGCAACT
CACGCAGCAGGCGAAGAGCTTGTCCGATGAGTCGTACACGACGATCCCAG
CGGTCAAGGCAGCAGAGGCCAAACGGTTTGAGCTGTTGAACGAGGCCTCG
CGTCTTCGACACGAGTCGTCGCTCTTGCGGATCGCGGCGAGAGTAAACTC
CGCTGGCTCACGGGTTTACGCGGCATCGACAATCCTGGGGTGGCTCGGGG
ACTTTCGGGGGCACGGTGGTTTCAAGCGAGATTCAAGGGGGGTGCACGAG
AGGGACTGGATCATGCCGTAA
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