EsuBft1122_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1122_5a-0001
Unique Name	EsuBft1122_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_319	contig	Scaffold_319:607026..611988 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	3827.XP_004514853.1
ProteomeId	EsuBft1122_5
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	33090\|Viridiplantae
Length	350
Evalue	0.000408
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37RIF@33090\|Viridiplantae
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1122_5a	EsuBft1122_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_319 607026..611988 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1122_5a-0001	EsuBft1122_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_319 609774..611988 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1122_5a-0001-exon	EsuBft1122_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_319 607026..607278 -
EsuBft1122_5a-0001-exon	agat-exon-1253	Ectocarpus subulatus male Bft15b	exon	Scaffold_319 607640..610299 -
EsuBft1122_5a-0001-exon	agat-exon-1254	Ectocarpus subulatus male Bft15b	exon	Scaffold_319 610616..610854 -
EsuBft1122_5a-0001-exon	agat-exon-1255	Ectocarpus subulatus male Bft15b	exon	Scaffold_319 611638..611988 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1122_5a-0001-exon	agat-three_prime_utr-1154	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_319 607026..607278 -
EsuBft1122_5a-0001-exon	agat-three_prime_utr-1155	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_319 607640..609773 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1122_5a-0001-cds	EsuBft1122_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_319 609774..610299 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_319:607026..611988-
coding sequence from alignment at Scaffold_319:607026..611988-

spliced messenger RNA

>EsuBft1122_5a-0001 ID=EsuBft1122_5a-0001|Name=EsuBft1122_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3503bp|location=Sequence derived from alignment at Scaffold_319:607026..611988- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGCCGCAGAACCGGAGGGACCACTCCGGACGGCTCGCAGGCAGG
AGACACAAATAGCAGCAAGCAGATCGACAGCATGCGGTCTGAGATCAGTT
CGCTGACACAGCAAATGGGCCAGCTGGTGCAGCTGGTCGGAGGACTTGCT
GCACGTATAGAGGAGAAGTCCGGCGGTGCCACGGAGGGCGCCGCTGAAAG
CGGCGGCGCCGTGGAGAGCGTCGCCACAAGCACTGCAGGTCATTTTGGGA
CCGTGCAGTACGACGGGAGCGCGCAGGCAGCGGACCTGCGAAGAGAGTCT
GGTCCTTCGGGACGGCACAGCGGCGAAGTAGGGGGTTCAGACCTCCAAGA
GGACTGCACCACCAAGGAGAGCGACTACCTCCCGCAGTGCTCACACTGCG
CAGGATGGGGTCACAGCAAGGACAAGTGCGCGACGGAGGAGGCCGTCCTG
GCGCAGATCGTCCATGCTGACAGCGACGACGACTCCGTCGACAACCAGGC
CTTCTGCGCGTCGCCGGGCCTGCCAGGCGAGTGTGGTGTTGTTGACCTAG
GTCTAGTGGGGGTAACGGAACTAGGCCAGGATGTCACGGTAGCAGCAGCA
GCAGCAAGAACAGTGACAGCAGCAGCAGCAACGCCGCCGGCGACGACGAC
GGCGACGGCGCCAGCGGCAGTGAGCCCGGCGCCTCTGGAGATTGCGGTGG
CGGCGGCAGCGAACCCGGCGAAGACTCCGAGCAACTCGAGGAGTACAAGT
TNGCAGGTCAACATCGAGTACCGGCGTGAGATGCATGAGCTGCCGTACGG
CACCGAGCTGCAGGAGGAGGCGTTCGGTGCAGAGGCAGGGGACGACGGGT
CATCGCAACCTCTTCATGACCCGCAGCTAAGTATCTCCTCGCCCTTCGGC
CAGAAGCCAAGTGATGTAGAGGTCGTGCCCTTGACGCACAAGGATGTCCT
TAGCTCCAAGTACAAGGTGCTGTGGGAAGCAGCCATAGCAAAGGAGTTCG
ACGGCCACAAGAAGACGGGGACGTTCTCCGAGATTAGCGGTCTGCCCGAG
GGGCGTAAGGCCATCAGTGCGAAGTGGATTTTCTCGCACAAGACCAATGA
GAAGGGGCTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNGGGGGGTACGTAGACAGGAGCATGCGTATGCCTGAAAAAGGC
TACTATGTGTGGGCCCCCTTCCCCGAATTCGGGAGGGCCACTTCTTCCCT
TCCTTTCCTCGCTCCCGCGGGTGCCTAATCAGAGAGAGTCAAAGCGTGCC
TTCTCCTCCCAAGTACGGACATACCAACAAGCGGCAGCAAGTGCGAACCG
GGGTGTGGGTGTGCCCCTCGGCCCCCTCACACCCAAGCACCTTCTCCTTC
TCCCGCCCATGTTGAGCCGACCACAAAAAAAAAATTCGAAAGATTCTAGG
GATTCCACCTAAAAAACGCACGAAAAAAACGTGTGTGGAAAAATGCGTCT
CAGACGGTTGAAAAATCGTTTTTCGCTCTCCCCGCTAGTGCCGGTTGGAA
CCCCCCCCCGTGTTCTTGATACTTTTTTGGACATCAGTACCCCCTCTTTT
TTTTTTTTTTTCCGCAAAACATGAACACGCGGCGGCGTGACTTGGCGTGA
TGTTGGCACGCGCGTTGACGTCCTGAAGCAAATGGCGCACCTACAGCGTG
ATGATTACGGCGGCTCTGCTGTGTGCGGTGGCTGGAGAAGAGAAGCTTTT
CCTCGTCCTGGCGGTAGTGGCAATGCGGCCACTCCAATGCGTTCCCAACT
CAAACCACGCTCCCAACTCGAACCACGCCGCCGGGTGAACTGTGTTAACC
CTGACTTCCAAGCACTTGACCGCTGGTGTGATTGATGGCTCGCTACCTCC
CTCAAAGGGCGGGGATGCACACGAAGTCCGCCGTAGGAGAGGCAGCTACC
GCG

protein sequence of EsuBft1122_5a-0001

>EsuBft1122_5 ID=EsuBft1122_5|Name=EsuBft1122_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=372bp
MAGRRTGGTTPDGSQAGDTNSSKQIDSMRSEISSLTQQMGQLVQLVGGLA
ARIEEKSGGATEGAAESGGAVESVATSTAGHFGTVQYDGSAQAADLRRES
GPSGRHSGEVGGSDLQEDCTTKESDYLPQCSHCAGWGHSKDKCATEEAVL
AQIVHADSDDDSVDNQAFCASPGLPGECGVVDLGLVGVTELGQDVTVAAA
AARTVTAAAATPPATTTATAPAAVSPAPLEIAVAAAANPAKTPSNSRSTS
XQVNIEYRREMHELPYGTELQEEAFGAEAGDDGSSQPLHDPQLSISSPFG
QKPSDVEVVPLTHKDVLSSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPE
GRKAISAKWIFSHKTNEKGLXX

mRNA from alignment at Scaffold_319:607026..611988-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1122_5a-0001 ID=EsuBft1122_5a-0001|Name=EsuBft1122_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4963bp|location=Sequence derived from alignment at Scaffold_319:607026..611988- (Ectocarpus subulatus male Bft15b)
ATGGCGGGCCGCAGAACCGGAGGGACCACTCCGGACGGCTCGCAGGCAGG
AGACACAAATAGCAGCAAGCAGATCGACAGCATGCGGTCTGAGATCAGTT
CGCTGACACAGCAAATGGGCCAGCTGGTGCAGCTGGTCGGAGGACTTGCT
GCACGTATAGAGGAGAAGTCCGGCGGTGCCACGGAGGGCGCCGCTGAAAG
CGGCGGCGCCGTGGAGAGCGTCGCCACAAGCACTGCAGGTCATTTTGGGA
CCGTGCAGTACGACGGGAGCGCGCAGGCAGCGGACCTGCGAAGAGAGTCT
GGTCCTTCGGGACGGCACAGCGGCGAAGTAGGGGGTTCAGACCTCCAAGA
GGTGAGAGTAGCCGCTGCTCACAATCAAGCTTGTTTCAGCAGCGCCATGG
GAAGTGGTGCTGCTGTCTTCGGTAGTGCGAGCGTGGGATACCAAAGCGTG
AAGTACACAGCGCCCACGTTCAGCNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNACGTGTGGCCGTTTCGGACACACGCAGCAGGACTGCACCACCAAGG
AGAGCGACTACCTCCCGCAGTGCTCACACTGCGCAGGATGGGGTCACAGC
AAGGACAAGTGCGCGACGGAGGAGGCCGTCCTGGCGCAGATCGTCCATGC
TGACAGCGACGACGACTCCGTCGACAACCAGGCCTTCTGCGCGTCGCCGG
GCCTGCCAGGCGAGTGTGGTGTTGTTGACCTAGGTCTAGTGGGGGTAACG
GAACTAGGCCAGGATGTCACGGTGTACGTGGCTGATACAGCAGCTACGTG
CTCCATGTTCCGATGCGCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAGCAGCAGCAG
CAGCAAGAACAGTGACAGCAGCAGCAGCAACGCCGCCGGCGACGACGACG
GCGACGGCGCCAGCGGCAGTGAGCCCGGCGCCTCTGGAGATTGCGGTGGC
GGCGGCAGCGAACCCGGCGAAGACTCCGAGCAACTCGAGGAGTACAAGTT
NGCAGGTCAACATCGAGTACCGGCGTGAGATGCATGAGCTGCCGTACGGC
ACCGAGCTGCAGGAGGAGGCGTTCGGTGCAGAGGCAGGGGACGACGGGTC
ATCGCAACCTCTTCATGACCCGCAGCTAAGTATCTCCTCGCCCTTCGGCC
AGAAGCCAAGTGATGTAGAGGTCGTGCCCTTGACGCACAAGGATGTCCTT
AGCTCCAAGTACAAGGTGCTGTGGGAAGCAGCCATAGCAAAGGAGTTCGA
CGGCCACAAGAAGACGGGGACGTTCTCCGAGATTAGCGGTCTGCCCGAGG
GGCGTAAGGCCATCAGTGCGAAGTGGATTTTCTCGCACAAGACCAATGAG
AAGGGGCTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNGGGGGGTACGTAGACAGGAGCATGCGTATGCCTGAAAAAGGCT
ACTATGTGTGGGCCCCCTTCCCCGAATTCGGGAGGGCCACTTCTTCCCTT
CCTTTCCTCGCTCCCGCGGGTGCCTAATCAGAGAGAGTCAAAGCGTGCCT
TCTCCTCCCAAGTACGGACATACCAACAAGCGGCAGCAAGTGCGAACCGG
GGTGTGGGTGTGCCCCTCGGCCCCCTCACACCCAAGCACCTTCTCCTTCT
CCCGCCCATGTTGAGCCGACCACAAAAAAAAAATTCGAAAGATTCTAGGG
ATTCCACCTAAAAAACGCACGAAAAAAACGTGTGTGGAAAAATGCGTCTC
AGACGGTTGAAAAATCGTTTTTCGCTCTCCCCGCTAGTGCCGGTTGGAAC
CCCCCCCCGTGTTCTTGATACTTTTTTGGACATCAGTACCCCCTCTTTTT
TTTTTTTTTTCCGCAAAACATGAACACGCGGCGGCGTGACTTGGCGTGAT
GTTGGCACGCGCGTTGACGTCCTGAAGCAAATGGCGCACCTACAGCGTGG
TAAGATTCGGCATGAGAGGCATGGCCAAATCATGCAGATGATTACGGCGG
CTCTGCTGTGTGCGGTGGCTGGAGAAGAGAAGCTTTTCCTCGTCCTGGCG
GTAGTGGCAATGCGGCCACTCCAATGCGTTCCCAACTCAAACCACGCTCC
CAACTCGAACCACGCCGCCGGGTGAACTGTGTTAACCCTGACTTCCAAGC
ACTTGACCGCTGGTGTGATTGATGGCTCGCTACCTCCCTCAAAGGGCGGG
GATGNGGCGTGACTTGGCGTGATGTTGGCACGCGCGTTGACGTCCTGAAG
CAAATGGCGCACCTACAGCGTGGTAAGATTCGGCATGAGAGGCATGGCCA
AATCATGCAGATGATTACGGCGGCTCTGCTGTGTGCGGTGGCTGGAGAAG
AGAAGCTTTTCCTCGTCCTGGCGGTAGTGGCAATGCGGCCACTCCAATGC
GTTCCCAACTCAAACCACGCTCCCAACTCGAACCACGCCGCCGGGTGAAC
TGTGTTAACCCTGACTTCCAAGCACTTGACCGCTGGTGTGATTGATGGCT
CGCTACCTCCCTCAAAGGGCGGGGATGCACACGAAGTCCGCCGTAGGAGA
GGCAGCTACCGCG

Coding sequence (CDS) from alignment at Scaffold_319:607026..611988-

>EsuBft1122_5a-0001 ID=EsuBft1122_5a-0001|Name=EsuBft1122_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1116bp|location=Sequence derived from alignment at Scaffold_319:607026..611988- (Ectocarpus subulatus male Bft15b)
ATGGCGGGCCGCAGAACCGGAGGGACCACTCCGGACGGCTCGCAGGCAGG
AGACACAAATAGCAGCAAGCAGATCGACAGCATGCGGTCTGAGATCAGTT
CGCTGACACAGCAAATGGGCCAGCTGGTGCAGCTGGTCGGAGGACTTGCT
GCACGTATAGAGGAGAAGTCCGGCGGTGCCACGGAGGGCGCCGCTGAAAG
CGGCGGCGCCGTGGAGAGCGTCGCCACAAGCACTGCAGGTCATTTTGGGA
CCGTGCAGTACGACGGGAGCGCGCAGGCAGCGGACCTGCGAAGAGAGTCT
GGTCCTTCGGGACGGCACAGCGGCGAAGTAGGGGGTTCAGACCTCCAAGA
GGACTGCACCACCAAGGAGAGCGACTACCTCCCGCAGTGCTCACACTGCG
CAGGATGGGGTCACAGCAAGGACAAGTGCGCGACGGAGGAGGCCGTCCTG
GCGCAGATCGTCCATGCTGACAGCGACGACGACTCCGTCGACAACCAGGC
CTTCTGCGCGTCGCCGGGCCTGCCAGGCGAGTGTGGTGTTGTTGACCTAG
GTCTAGTGGGGGTAACGGAACTAGGCCAGGATGTCACGGTAGCAGCAGCA
GCAGCAAGAACAGTGACAGCAGCAGCAGCAACGCCGCCGGCGACGACGAC
GGCGACGGCGCCAGCGGCAGTGAGCCCGGCGCCTCTGGAGATTGCGGTGG
CGGCGGCAGCGAACCCGGCGAAGACTCCGAGCAACTCGAGGAGTACAAGT
TNGCAGGTCAACATCGAGTACCGGCGTGAGATGCATGAGCTGCCGTACGG
CACCGAGCTGCAGGAGGAGGCGTTCGGTGCAGAGGCAGGGGACGACGGGT
CATCGCAACCTCTTCATGACCCGCAGCTAAGTATCTCCTCGCCCTTCGGC
CAGAAGCCAAGTGATGTAGAGGTCGTGCCCTTGACGCACAAGGATGTCCT
TAGCTCCAAGTACAAGGTGCTGTGGGAAGCAGCCATAGCAAAGGAGTTCG
ACGGCCACAAGAAGACGGGGACGTTCTCCGAGATTAGCGGTCTGCCCGAG
GGGCGTAAGGCCATCAGTGCGAAGTGGATTTTCTCGCACAAGACCAATGA
GAAGGGGCTGATNNNN