EsuBft1122_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1122_3a-0001
Unique Name	EsuBft1122_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_319	contig	Scaffold_319:625689..627818 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	126957.SMAR012572-PA
ProteomeId	EsuBft1122_3
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	TMhelix
Protein domains	IPR001584
Protein domains	PTHR11439
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SignalP-TM
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	IPR012337
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_H_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	33208\|Metazoa
Length	186
Hectar predicted targeting category	signal peptide
Evalue	2.86e-11
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3BI7U@33208\|Metazoa,3CTS1@33213\|Bilateria,41WYJ@6656\|Arthropoda
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Encoded by
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1122_3a	EsuBft1122_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_319 625689..627818 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1122_3a-0001-exon	agat-exon-1250	Ectocarpus subulatus male Bft15b	exon	Scaffold_319 625689..625982 +
EsuBft1122_3a-0001-exon	agat-exon-1249	Ectocarpus subulatus male Bft15b	exon	Scaffold_319 626093..626753 +
EsuBft1122_3a-0001-exon	EsuBft1122_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_319 626911..627818 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1122_3a-0001-cds	EsuBft1122_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_319 625689..625982 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1122_3a-0001	EsuBft1122_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_319 625689..627818 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_319:625689..627818+
coding sequence from alignment at Scaffold_319:625689..627818+

spliced messenger RNA

>EsuBft1122_3a-0001 ID=EsuBft1122_3a-0001|Name=EsuBft1122_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1863bp|location=Sequence derived from alignment at Scaffold_319:625689..627818+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCACAGTGCTCACGTTGGCGCCGCTGGCCGCTGGGGTGCCGTCCAT
TTCGGTGGCGGTCACGGCGGCGGCGGCGGTGGCGGCGGCGACGGCGGTGG
CCACTGCAACGGAGGCGGCTTCACCGACGGTGGAGGCGTTGGGGGTGGCG
GCGGTGACGGCGGCGGTGGTGTCAGGGACGGCGGTGGCGGTGTTGGGGAC
GGCTGCGGCAACTGGCGTAGCGGCGGTGACGGCGGCGGTGGAAGCGGTGG
TGGTGACGGTGGTCGCGGCTCGGCGTTGGCTCTCATGCGCCCAGAGGGTG
TTTTGCGGGGGGTGCGCTGTCGGCAAGGGGATTCGCAAGGCTATCGCTCG
GACAACGAGTTCTACCGCTGCTCGCCCCCTCCAGCGTTTCTTTGCCGATC
TGGCGGGGCCGCTCCCGCGTTCCGCGGCTGGCTCTGCCTACGTCTTGTGC
ATCGTCGACGACTGCACCAACTTCGGTGTTCTGAAGTTTCTCAAGGACAA
AAGCGCCCCCGCCGTCTGCACAGCACTCCGCGAGTTTTTCGTCTCTCTAC
AGGGTCTGCGCTCTACCCACGGCAACTTCCAGCTGCTTCGCACGGACAAC
GGCCGCGAGTTCCTGAACGAGCTTGTTGACGATCTCCTCCTCGAGTTCGG
CATCACGCGTGAGCTGACCTCGCCGGAGGGAGGCCAAAAGCGAAACGGCA
AGGTGGAGCGGCAGATCGGTCTCATCAGGGAAGGGGGGCGAGCGGCGGTG
GAGGAGGCCGTGCACCTGTTCCCCGACATCCGGTTCCCCACGAAGGCCCT
CACGTTCGACGCCATCTACCCGGAGGCCTTCGCGGGGATGTCTGACAACA
TCAACGTTCTCGCGCGGCTTGACCAGAAACCGCACATGCGGTGCCCGTAT
GAACTGCTCTACGGCAAGCGTCCTCTCCGCGCCCCGCTGCCGTTTCTGAT
GCCAGGCGCCCGCGCTTCATCGGTGTTGTGGCGACGTACGGCGGCGTCGC
CGCGCGGGATCCGTGAGCAGACGGCGGCCTTGACAAGGGCATCGCAGTCG
TTCATGGCGGCGGGAGCAACGGCGATGGAGGCGGCGCCGGCGGCGGGAGG
TACGACAGCAGCGGGAGCAGAGGCGTCGTCCCCGGTCGCCGCGTTGGCGC
CGGGCCCTCAGACGAAGTGGGCGGCGATGGAGGCGGCGCCGGCGGCGGGG
GGTACGGCAGCAGCGGGAGCAGCGGCGTCGTCCCCGGTCGCCGCGTTGGC
GCAGGGCCTTCGGACAGATGTAGCGGCGATGGAGGCGGCACCGGCGAGGG
GGGGAATGGTAGCGGCGGCAGCAGTAGCGCCGTCCCCGGTCGCCGCGTTG
GCGTCGGACATTCGGACGACCGCAGCGGCGGTGGCAACAGCGGCGGCGTC
GATGTCGACGGTGATGGAGGAGATGGCGATGCTCGTGGCGTGCACACTTG
GGTCCGCGACCACGATGCGCCCGACCGCAGCTTCGTCATCGACCCCAACC
GGAGCGGCCCCGACCCGCGCCGGCCCCCGCGCGCGCCATACATGTAGACC
CAGCAGCAACGTCATCAGGTCACCCCCTCCGTCACGAGGTCAGCCACGCG
GCGCTTGGCTGCCGCTGGGCCTCCGCCGCGGTCACCGGGGGTGTTGGCGA
TGTTTGCAACAGCGGAAGACTTCGACGCGCGAATGGACGATGAGCGGTAC
TTTGGGGTTCCCGAGTTGCCGGATGGGCCTGCGACGCGTGACCCCGACGA
CTTGGGCGGAGGCGCACTCAGGCGAAGACAGCGACATCTGGTACAGCGCG
GAGGACGCGGAGTTCACTGGACTTCTCGAGGCGGAGACCTTTTCGCCTGC
GGCAGGCTCGTAG

protein sequence of EsuBft1122_3a-0001

>EsuBft1122_3 ID=EsuBft1122_3|Name=EsuBft1122_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=620bp
MPTVLTLAPLAAGVPSISVAVTAAAAVAAATAVATATEAASPTVEALGVA
AVTAAVVSGTAVAVLGTAAATGVAAVTAAVEAVVVTVVAARRWLSCAQRV
FCGGCAVGKGIRKAIARTTSSTAARPLQRFFADLAGPLPRSAAGSAYVLC
IVDDCTNFGVLKFLKDKSAPAVCTALREFFVSLQGLRSTHGNFQLLRTDN
GREFLNELVDDLLLEFGITRELTSPEGGQKRNGKVERQIGLIREGGRAAV
EEAVHLFPDIRFPTKALTFDAIYPEAFAGMSDNINVLARLDQKPHMRCPY
ELLYGKRPLRAPLPFLMPGARASSVLWRRTAASPRGIREQTAALTRASQS
FMAAGATAMEAAPAAGGTTAAGAEASSPVAALAPGPQTKWAAMEAAPAAG
GTAAAGAAASSPVAALAQGLRTDVAAMEAAPARGGMVAAAAVAPSPVAAL
ASDIRTTAAAVATAAASMSTVMEEMAMLVACTLGSATTMRPTAASSSTPT
GAAPTRAGPRARHTCRPSSNVIRSPPPSRGQPRGAWLPLGLRRGHRGCWR
CLQQRKTSTREWTMSGTLGFPSCRMGLRRVTPTTWAEAHSGEDSDIWYSA
EDAEFTGLLEAETFSPAAGS

mRNA from alignment at Scaffold_319:625689..627818+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1122_3a-0001 ID=EsuBft1122_3a-0001|Name=EsuBft1122_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2130bp|location=Sequence derived from alignment at Scaffold_319:625689..627818+ (Ectocarpus subulatus male Bft15b)
ATGCCCACAGTGCTCACGTTGGCGCCGCTGGCCGCTGGGGTGCCGTCCAT
TTCGGTGGCGGTCACGGCGGCGGCGGCGGTGGCGGCGGCGACGGCGGTGG
CCACTGCAACGGAGGCGGCTTCACCGACGGTGGAGGCGTTGGGGGTGGCG
GCGGTGACGGCGGCGGTGGTGTCAGGGACGGCGGTGGCGGTGTTGGGGAC
GGCTGCGGCAACTGGCGTAGCGGCGGTGACGGCGGCGGTGGAAGCGGTGG
TGGTGACGGTGGTCGCGGCTCGGCGTTGGCTCTCATGCGCCCAGGTATGC
CGCTCGCAATGGATACTAACGATCACCACGTTGCGCTCGGCCATGCGCAT
GACGACCTTATTCGCGAGACAGCGCAACAGATGGGCATCAGGCCGACGGG
GTAGAGGGTGTTTTGCGGGGGGTGCGCTGTCGGCAAGGGGATTCGCAAGG
CTATCGCTCGGACAACGAGTTCTACCGCTGCTCGCCCCCTCCAGCGTTTC
TTTGCCGATCTGGCGGGGCCGCTCCCGCGTTCCGCGGCTGGCTCTGCCTA
CGTCTTGTGCATCGTCGACGACTGCACCAACTTCGGTGTTCTGAAGTTTC
TCAAGGACAAAAGCGCCCCCGCCGTCTGCACAGCACTCCGCGAGTTTTTC
GTCTCTCTACAGGGTCTGCGCTCTACCCACGGCAACTTCCAGCTGCTTCG
CACGGACAACGGCCGCGAGTTCCTGAACGAGCTTGTTGACGATCTCCTCC
TCGAGTTCGGCATCACGCGTGAGCTGACCTCGCCGGAGGGAGGCCAAAAG
CGAAACGGCAAGGTGGAGCGGCAGATCGGTCTCATCAGGGAAGGGGGGCG
AGCGGCGGTGGAGGAGGCCGTGCACCTGTTCCCCGACATCCGGTTCCCCA
CGAAGGCCCTCACGTTCGACGCCATCTACCCGGAGGCCTTCGCGGGGATG
TCTGACAACATCAACGTTCTCGCGCGGCTTGACCAGAAACCGCACATGCG
GTGCCCGTATGAACTGCTCTACGGCAAGCGTCCTCTCCGCGCCCCGCTGC
CGTTTCTGATGCCAGGTATTCACCATGACCGGCGCTCCTCCAAGATCGAG
GCCAAAGCAGAACGCTGCTTCTATCTCAACAGCGGCGTCGGTCACTCGCG
GGACTCTTTTAAGGTCCTCTACTCCTCGGGCCTCGCGGGATACACCACGG
ATGATGTCTTCGGCTACAGCAGGCGCCCGCGCTTCATCGGTGTTGTGGCG
ACGTACGGCGGCGTCGCCGCGCGGGATCCGTGAGCAGACGGCGGCCTTGA
CAAGGGCATCGCAGTCGTTCATGGCGGCGGGAGCAACGGCGATGGAGGCG
GCGCCGGCGGCGGGAGGTACGACAGCAGCGGGAGCAGAGGCGTCGTCCCC
GGTCGCCGCGTTGGCGCCGGGCCCTCAGACGAAGTGGGCGGCGATGGAGG
CGGCGCCGGCGGCGGGGGGTACGGCAGCAGCGGGAGCAGCGGCGTCGTCC
CCGGTCGCCGCGTTGGCGCAGGGCCTTCGGACAGATGTAGCGGCGATGGA
GGCGGCACCGGCGAGGGGGGGAATGGTAGCGGCGGCAGCAGTAGCGCCGT
CCCCGGTCGCCGCGTTGGCGTCGGACATTCGGACGACCGCAGCGGCGGTG
GCAACAGCGGCGGCGTCGATGTCGACGGTGATGGAGGAGATGGCGATGCT
CGTGGCGTGCACACTTGGGTCCGCGACCACGATGCGCCCGACCGCAGCTT
CGTCATCGACCCCAACCGGAGCGGCCCCGACCCGCGCCGGCCCCCGCGCG
CGCCATACATGTAGACCCAGCAGCAACGTCATCAGGTCACCCCCTCCGTC
ACGAGGTCAGCCACGCGGCGCTTGGCTGCCGCTGGGCCTCCGCCGCGGTC
ACCGGGGGTGTTGGCGATGTTTGCAACAGCGGAAGACTTCGACGCGCGAA
TGGACGATGAGCGGTACTTTGGGGTTCCCGAGTTGCCGGATGGGCCTGCG
ACGCGTGACCCCGACGACTTGGGCGGAGGCGCACTCAGGCGAAGACAGCG
ACATCTGGTACAGCGCGGAGGACGCGGAGTTCACTGGACTTCTCGAGGCG
GAGACCTTTTCGCCTGCGGCAGGCTCGTAG

Coding sequence (CDS) from alignment at Scaffold_319:625689..627818+

>EsuBft1122_3a-0001 ID=EsuBft1122_3a-0001|Name=EsuBft1122_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1863bp|location=Sequence derived from alignment at Scaffold_319:625689..627818+ (Ectocarpus subulatus male Bft15b)
ATGCCCACAGTGCTCACGTTGGCGCCGCTGGCCGCTGGGGTGCCGTCCAT
TTCGGTGGCGGTCACGGCGGCGGCGGCGGTGGCGGCGGCGACGGCGGTGG
CCACTGCAACGGAGGCGGCTTCACCGACGGTGGAGGCGTTGGGGGTGGCG
GCGGTGACGGCGGCGGTGGTGTCAGGGACGGCGGTGGCGGTGTTGGGGAC
GGCTGCGGCAACTGGCGTAGCGGCGGTGACGGCGGCGGTGGAAGCGGTGG
TGGTGACGGTGGTCGCGGCTCGGCGTTGGCTCTCATGCGCCCAGAGGGTG
TTTTGCGGGGGGTGCGCTGTCGGCAAGGGGATTCGCAAGGCTATCGCTCG
GACAACGAGTTCTACCGCTGCTCGCCCCCTCCAGCGTTTCTTTGCCGATC
TGGCGGGGCCGCTCCCGCGTTCCGCGGCTGGCTCTGCCTACGTCTTGTGC
ATCGTCGACGACTGCACCAACTTCGGTGTTCTGAAGTTTCTCAAGGACAA
AAGCGCCCCCGCCGTCTGCACAGCACTCCGCGAGTTTTTCGTCTCTCTAC
AGGGTCTGCGCTCTACCCACGGCAACTTCCAGCTGCTTCGCACGGACAAC
GGCCGCGAGTTCCTGAACGAGCTTGTTGACGATCTCCTCCTCGAGTTCGG
CATCACGCGTGAGCTGACCTCGCCGGAGGGAGGCCAAAAGCGAAACGGCA
AGGTGGAGCGGCAGATCGGTCTCATCAGGGAAGGGGGGCGAGCGGCGGTG
GAGGAGGCCGTGCACCTGTTCCCCGACATCCGGTTCCCCACGAAGGCCCT
CACGTTCGACGCCATCTACCCGGAGGCCTTCGCGGGGATGTCTGACAACA
TCAACGTTCTCGCGCGGCTTGACCAGAAACCGCACATGCGGTGCCCGTAT
GAACTGCTCTACGGCAAGCGTCCTCTCCGCGCCCCGCTGCCGTTTCTGAT
GCCAGGCGCCCGCGCTTCATCGGTGTTGTGGCGACGTACGGCGGCGTCGC
CGCGCGGGATCCGTGAGCAGACGGCGGCCTTGACAAGGGCATCGCAGTCG
TTCATGGCGGCGGGAGCAACGGCGATGGAGGCGGCGCCGGCGGCGGGAGG
TACGACAGCAGCGGGAGCAGAGGCGTCGTCCCCGGTCGCCGCGTTGGCGC
CGGGCCCTCAGACGAAGTGGGCGGCGATGGAGGCGGCGCCGGCGGCGGGG
GGTACGGCAGCAGCGGGAGCAGCGGCGTCGTCCCCGGTCGCCGCGTTGGC
GCAGGGCCTTCGGACAGATGTAGCGGCGATGGAGGCGGCACCGGCGAGGG
GGGGAATGGTAGCGGCGGCAGCAGTAGCGCCGTCCCCGGTCGCCGCGTTG
GCGTCGGACATTCGGACGACCGCAGCGGCGGTGGCAACAGCGGCGGCGTC
GATGTCGACGGTGATGGAGGAGATGGCGATGCTCGTGGCGTGCACACTTG
GGTCCGCGACCACGATGCGCCCGACCGCAGCTTCGTCATCGACCCCAACC
GGAGCGGCCCCGACCCGCGCCGGCCCCCGCGCGCGCCATACATGTAGACC
CAGCAGCAACGTCATCAGGTCACCCCCTCCGTCACGAGGTCAGCCACGCG
GCGCTTGGCTGCCGCTGGGCCTCCGCCGCGGTCACCGGGGGTGTTGGCGA
TGTTTGCAACAGCGGAAGACTTCGACGCGCGAATGGACGATGAGCGGTAC
TTTGGGGTTCCCGAGTTGCCGGATGGGCCTGCGACGCGTGACCCCGACGA
CTTGGGCGGAGGCGCACTCAGGCGAAGACAGCGACATCTGGTACAGCGCG
GAGGACGCGGAGTTCACTGGACTTCTCGAGGCGGAGACCTTTTCGCCTGC
GGCAGGCTCGTAG