EsuBft1122_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1122_2a-0001
Unique NameEsuBft1122_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_319contigScaffold_319:634292..637070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LKU5
ProteomeIdEsuBft1122_2
Protein domainsIPR012317
Protein domainsSSF56399
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length54
Hectar predicted targeting categoryother localisation
Evalue1.16e-60
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K06972
Descriptiondetermination of stomach left/right asymmetry
COG categoryC
BRITEko00000,ko01000,ko01002
Cross References
External references for this mRNA
DatabaseAccession
GO0003950
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1122_2aEsuBft1122_2aEctocarpus subulatus male Bft15bgeneScaffold_319 634292..637070 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1122_2a-0001-exonagat-exon-1248Ectocarpus subulatus male Bft15bexonScaffold_319 634292..634456 +
EsuBft1122_2a-0001-exonEsuBft1122_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_319 635178..635407 +
EsuBft1122_2a-0001-exonagat-exon-1247Ectocarpus subulatus male Bft15bexonScaffold_319 635923..635974 +
EsuBft1122_2a-0001-exonagat-exon-1246Ectocarpus subulatus male Bft15bexonScaffold_319 636978..637070 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1122_2a-0001-cdsEsuBft1122_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_319 634292..634456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1122_2a-0001EsuBft1122_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_319 634292..637070 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1122_2a-0001 ID=EsuBft1122_2a-0001|Name=EsuBft1122_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=540bp|location=Sequence derived from alignment at Scaffold_319:634292..637070+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGCGAAGTTCATACTGCCTGTGGGGAGCAGCGAAAGTACCTTGCG
AATGCTTGAAGGCAATGGCAGGGAGTACAATACTCTCCGTGATCTGTTCA
ACGATCGGTGGATCAAACCACGGCCGGCAAAGGGTGTTTCTATCGAGCGC
ATCTTCAGCATCCAGGGCGGACAAGCCCCGTGCGGGAAGAGCAGCTGCAC
CGTCTGCAACATCTGCAAGCTAGGCTTCAAGCTGGGAGCCAACGTGGCCG
GCACGGCCCGGGCAACCGGTGTCCCGCTTCGGTACGGGGAGGACACCTAC
TTGACAAGCGTGTCCGGAAAGGCAAACGACTACGCCTCGCGCTCGGCGAA
GGTGCGCATGATCATGGGGAATGAGGCCTTCTTCGCGGCTCACCAGCTCC
CGGCAAACCAGTGCCCGCCTCCTGGTTGTCAATCTGTGGTGGGAGAGGTG
GGCCAAGGGCTGAACTTCGACGAGTTCGTGGTGTACAATGAGGAGGCCGC
TCTGCCAACTCACCTCATCGTGTATGCTCTTCGGCACTAA
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protein sequence of EsuBft1122_2a-0001

>EsuBft1122_2 ID=EsuBft1122_2|Name=EsuBft1122_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=179bp
MCAKFILPVGSSESTLRMLEGNGREYNTLRDLFNDRWIKPRPAKGVSIER
IFSIQGGQAPCGKSSCTVCNICKLGFKLGANVAGTARATGVPLRYGEDTY
LTSVSGKANDYASRSAKVRMIMGNEAFFAAHQLPANQCPPPGCQSVVGEV
GQGLNFDEFVVYNEEAALPTHLIVYALRH
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mRNA from alignment at Scaffold_319:634292..637070+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1122_2a-0001 ID=EsuBft1122_2a-0001|Name=EsuBft1122_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2779bp|location=Sequence derived from alignment at Scaffold_319:634292..637070+ (Ectocarpus subulatus male Bft15b)
ATGTGTGCGAAGTTCATACTGCCTGTGGGGAGCAGCGAAAGTACCTTGCG
AATGCTTGAAGGCAATGGCAGGGAGTACAATACTCTCCGTGATCTGTTCA
ACGATCGGTGGATCAAACCACGGCCGGCAAAGGGTGTTTCTATCGAGCGC
ATCTTCAGCATCCAGGTGCGTTGAAACCATTAAATGTCGGTTAGAGGCGA
ACATACTACCGAATATGTGAATTCATGAGACGCGAAAACGCTACTCTCAA
AACAAAAGTCGATCGAACACCGGAAATTTGGTGCAAACAGTATCTCGCCT
AAGTTATGTTTTGGATAACCAGCACGTGACGGATGCTCTTCGGAATCGTC
AATGGAAAAAAGCTGATATTTCGTTGCCACGCGCGCCTTGCCACACCATG
TCAAAATAGGCAGATATGCAAGCAGTCATTCCAGCAACCACTCTCCTAGC
CGTGCTACAAGTGGTTTCAAGCAAGAGAAGAGTAGTCTACATTTGAGACA
TGAGCCTTTCTGCACTCACTCGTCTTGCTGCCATTCGTTGATCAGCTTTA
ACCCCCCTGTCCGTTGCCCTCACAGGTTTCTCGTGAGGTGCGTGACAAGC
ACGAGCGGCACAAAGGAACGCTTTCATCGCACCTCCTGCAACGAAAGGTG
CAACTTCATGGTCGATCCACAGGTGAACAGCGGCCCTTGCATAGATGTAG
GCTGCTATTACAGTGTGGCGCCCACTTGAAGTGCGTCGTAGGAATAGATT
GGCCAATCCACTTCTTCCCGATCGGTTCGAACAGTCACGCTCCGGCACCC
GGGTCTCCTGTATTCTGCCCTCCTTGTAGGCGTAGCGCGTCGTCAATCAA
TCCTTGTCCACTCGTTCGGGGTCTGTTGACGTGCAGGGCGGACAAGCCCC
GTGCGGGAAGAGCAGCTGCACCGTCTGCAACATCTGCAAGCTAGGCTTCA
AGCTGGGAGCCAACGTGGCCGGCACGGCCCGGGCAACCGGTGTCCCGCTT
CGGTACGGGGAGGACACCTACTTGACAAGCGTGTCCGGAAAGGCAAACGA
CTACGCCTCGCGCTCGGCGAAGGTGCGCATGATCATGGGGAATGAGGCCT
TCTTCGCGGCTCACCAGTATGTTTTTTCTCAGCACGGGGTGACATGCACA
CCAGACCAGGAGTCCTTCCTGGCGCAGGAGGTCTTGTCCCAATCCAATGC
TTACATTACATGGTCCTCGGTATGGAGACAGAATACAACATAGAATTGCG
GTGTAGCTACCTCGCAGCAGGCTAGACACGCTGCTTCAACGAACACGTTC
CCACGTATCATCCATATTTTGTTCTGAAGGGGAAGGTCAGCGACCGGGTT
TCCCGGTTATGGTGGAGAGAGTATCCAACAATCTCAGCAAGCCGCTCGTC
AGTCTATTGACGGCCTGGCTAAAGAACAAACGTTACGAAATGATACGTTT
TTCTCGCCGCCGCATGTATGAATGTGCTCCCGGGTGGTCCCTAATTCTCT
CGCTCGCACCCGGTCCTCTCTCTCCTCTTCGAATCGATCATCATATCAGA
AAATCGGTATCGCCTCGGAGCTGAGGTGCATGTTCGTCGCCAGCGTCGCC
GTGCAAGAATGTTCAAGACCAAGAGTACTAGGCTCCCGGCAAACCAGTGC
CCGCCTCCTGGTTGTCAATCTGTGGTGGGAGAGGTATGTATTCCCCATCG
AGTGAAGGAAGTCCACTCTCTCTACAGACTACTGTAGACTTAGAAACAAT
GCCCTTGCCATTGGCGTGGTTTCAGGTGCTACAATTCAGACCTTGGATTC
CAGCCGCCTCGACGTGATTGTCCCCAAACAAACCTGAGAAACGCGCACTG
CCCCCCTTTCCGTGGCTCAAAACTCCGTGTTCTCCGCCCCGTTACATTGA
AAGCAAGAGCTTGTCGTAGTCGGGAGTCTCTTCGTACTCCAAGCTGTACA
CAGCCGTGGTTGTCCAGGCTGCAGCGCTTTCATTCTCGCGCTGTTTCGCG
GTTGCGGGAGTCGAGGTTGCGCTCCTGATCATGTGTCTGTGTGTGTACTA
AATAGTGGTTCACACAATATTACCGTATACGACAAAAGATGACACACCCC
CTGGACCGATCTTCAAAGCTCGGTTACGCGACGGCGAAGAAAATGCATAA
ATACATTCTCAGATAGCTCTCAATGAGATTGCTTCAATGCCGCTTTTTTC
GGCGCTATGACTCGTTCTGCTGTTGAGAAATCGAGCCTCGAAAATCGGTC
CGGGGGGTGTGTTATTTTGCGTCGTATACGGTAGTCTACTGGAAAAACGT
GATCAGTAGATTTGTCATGACAGCATCGACGTCAGAATGTGTAGGTTGGA
ACTACCAACGTCTCGCTCGGCCTGGTCTCCCAGCGTTGAGCGGAAATCCA
CGAGGTGACATGCATACACGAACTCGTGACGAGGTCACCCCAAGACAATC
GCTGTAAGTCAAGCCAGGGTGATTTGGCGCGCTGCATTTTCCCGCCGGTC
CTGTGTTTTGCGGGACACGTTCGAGCATCACGAGGTCTCCCTCATCCGCA
GATTGGAGGTGGCGTCGGTTGATTTGGATTCCATGACTTGCGTGTTGTTT
ATCGCTGAATATCTGAGGTAGATGACATAATAGCCGCAGCGTTAGCCCAA
ATGCCACCCGCCCAACCTCGGTCATCGCTCGGTCAGGTGGGCCAAGGGCT
GAACTTCGACGAGTTCGTGGTGTACAATGAGGAGGCCGCTCTGCCAACTC
ACCTCATCGTGTATGCTCTTCGGCACTAA
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Coding sequence (CDS) from alignment at Scaffold_319:634292..637070+

>EsuBft1122_2a-0001 ID=EsuBft1122_2a-0001|Name=EsuBft1122_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=540bp|location=Sequence derived from alignment at Scaffold_319:634292..637070+ (Ectocarpus subulatus male Bft15b)
ATGTGTGCGAAGTTCATACTGCCTGTGGGGAGCAGCGAAAGTACCTTGCG
AATGCTTGAAGGCAATGGCAGGGAGTACAATACTCTCCGTGATCTGTTCA
ACGATCGGTGGATCAAACCACGGCCGGCAAAGGGTGTTTCTATCGAGCGC
ATCTTCAGCATCCAGGGCGGACAAGCCCCGTGCGGGAAGAGCAGCTGCAC
CGTCTGCAACATCTGCAAGCTAGGCTTCAAGCTGGGAGCCAACGTGGCCG
GCACGGCCCGGGCAACCGGTGTCCCGCTTCGGTACGGGGAGGACACCTAC
TTGACAAGCGTGTCCGGAAAGGCAAACGACTACGCCTCGCGCTCGGCGAA
GGTGCGCATGATCATGGGGAATGAGGCCTTCTTCGCGGCTCACCAGCTCC
CGGCAAACCAGTGCCCGCCTCCTGGTTGTCAATCTGTGGTGGGAGAGGTG
GGCCAAGGGCTGAACTTCGACGAGTTCGTGGTGTACAATGAGGAGGCCGC
TCTGCCAACTCACCTCATCGTGTATGCTCTTCGGCACTAA
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