EsuBft111_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft111_3a-0001
Unique NameEsuBft111_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_332contigScaffold_332:236978..239789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FLJ7
ProteomeIdEsuBft111_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl2759|Eukaryota
Length89
Hectar predicted targeting categoryother localisation
Evalue1.22e-42
EggNOG OGsKOG3765@1|root,KOG3765@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptionprotein O-linked glycosylation
COG categoryA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft111_3aEsuBft111_3aEctocarpus subulatus male Bft15bgeneScaffold_332 236978..239789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft111_3a-0001EsuBft111_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_332 236978..239789 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft111_3a-0001-exonagat-exon-52123Ectocarpus subulatus male Bft15bexonScaffold_332 236978..237082 +
EsuBft111_3a-0001-exonagat-exon-52122Ectocarpus subulatus male Bft15bexonScaffold_332 237465..237498 +
EsuBft111_3a-0001-exonagat-exon-52125Ectocarpus subulatus male Bft15bexonScaffold_332 238088..238239 +
EsuBft111_3a-0001-exonagat-exon-52126Ectocarpus subulatus male Bft15bexonScaffold_332 238534..238591 +
EsuBft111_3a-0001-exonagat-exon-52124Ectocarpus subulatus male Bft15bexonScaffold_332 238978..239499 +
EsuBft111_3a-0001-exonEsuBft111_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_332 239764..239789 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft111_3a-0001-cdsEsuBft111_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_332 236978..237082 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft111_3a-0001 ID=EsuBft111_3a-0001|Name=EsuBft111_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=897bp|location=Sequence derived from alignment at Scaffold_332:236978..239789+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAGCACGATGATGGCTGTAGGGACAACCTCGGAGGAGGAGGAGGA
GGAGGTGGAGACACGGCGGATCACCGCGACCTGCCCGCTAACGGGGAGGG
ATCAGGACGACTACGTTGCTAGCCCGGGCGGTGACGACGGAGAGTCATCC
AGCCCCCTGGATCGAGTCCGCGATCTCATTACGAACGAGGGGCCGAGCGT
GTTCGACCCCTCGAACCTGGGTCGCATCGACGACCTCTTCAGGGAGGCGG
GCTCTGACGTGTACGAGCGGATGGGACCCATCCTCGGCGAGGCTGGCGAC
TTCGGCTCAAAAGTGGCAGACACGGCTGCGTCGTGGGGAACTGATCTAGG
TAGTGTTTTCGGAAGCATCGGCGAATCCGCTGGAGAAGCTTTCGGCGGAT
TAGGAGACCTCTTCTCCGACGTCGGGGGTGCTTTGGGCAGTGGCCTAGGT
GAGGTAGGGGACTGGGCGGGGGACGCGCTGGGGGACGGCGTAGACGCAGC
GAGAGGCCTGGCCGAAGTCATCGGAGAGGGCATCGGAGATGGTCTCGACG
TAGCGGGAGATCTCGCCGGAGACGGGCTAGACGCGGCGGGCGACCTAGCC
GAAGACATCGGGGAGGGCATCGGAGCGGGCCTGGACGCAGCCGGAGATCT
CGCTGCAGACGGGCTAGACGCGGCGGGCGACCTAGCCGAAGACATCGGGG
AGGGCATGGGGGATGGCCTGGAAGCAGCCGGAGACCTTGCCGGTGGCGCC
GTGGATGCGGTCACGGATGCCGTCGATGGTGTATCAGACGACGTGGACAT
GTACGCGGGCGCAGGGCCGAGGGATCTGGACGATGAAGGGCCGACCGGGG
GCGGAAACTTTGCTATGGTGGGGCCGGGAATGGGTGTGGCGTCGTAG
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protein sequence of EsuBft111_3a-0001

>EsuBft111_3 ID=EsuBft111_3|Name=EsuBft111_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=298bp
MNSTMMAVGTTSEEEEEEVETRRITATCPLTGRDQDDYVASPGGDDGESS
SPLDRVRDLITNEGPSVFDPSNLGRIDDLFREAGSDVYERMGPILGEAGD
FGSKVADTAASWGTDLGSVFGSIGESAGEAFGGLGDLFSDVGGALGSGLG
EVGDWAGDALGDGVDAARGLAEVIGEGIGDGLDVAGDLAGDGLDAAGDLA
EDIGEGIGAGLDAAGDLAADGLDAAGDLAEDIGEGMGDGLEAAGDLAGGA
VDAVTDAVDGVSDDVDMYAGAGPRDLDDEGPTGGGNFAMVGPGMGVAS
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mRNA from alignment at Scaffold_332:236978..239789+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft111_3a-0001 ID=EsuBft111_3a-0001|Name=EsuBft111_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2812bp|location=Sequence derived from alignment at Scaffold_332:236978..239789+ (Ectocarpus subulatus male Bft15b)
ATGAACAGCACGATGATGGCTGTAGGGACAACCTCGGAGGAGGAGGAGGA
GGAGGTGGAGACACGGCGGATCACCGCGACCTGCCCGCTAACGGGGAGGG
ATCAGGTGCGTAAATAGTGCATCTGAGGGAACGGAGACGTAGCGATGGGA
GGTAGGCCGGGAATTTCGTGCGGCCGTAGCCGTCGTCCATGTTTATTGGC
GCTTTATCGCTTGCAACGCCTCGTGGTAACACTACTTCAGGTGAACACCC
TCTTTATGCGTTCTTGGTGTTTGCTCTGAGTTAGGGCGCATGGAAATAAC
TCCAAATTCCGGCACAACCACAGCAGCAGTACCCATACCAAGGGTTTCAG
ACTCAACTCGACCGATAGGGGCAGAGTGCCGCGTACTACGCTAGCATCGG
TGCTAACTCGTTTAGTCCACGCACCACGTGCTTTCTTTGGCGCGTACAGC
TTCTATCTCCCCTGAAGAGGAGCTGGTGGACCTGCAGGACGACTACGTTG
CTAGCCCGGGCGGTGACGACGGTAAGACTGCGTAGGCCTCTGAACACTTG
CTGAATCCATGGTGAATCCCCACGTCGGTCGGTTGTTCTTTGAAACTTTT
CCGTACTACAATGATCCGGCGTATTTGCAAGATGGAACCGAATTGGCCAA
GGTGCATATGCACACAGCAGGTGCTAGGGTCGGCCAAAGACGGCCTGATT
CGGGTGATAACTTGTGAACAAGCCCTATTATATATAGGTTCTGACAGCTT
CAATGGCCAAAGCCTGTTGCCTCACTGAGGCGAATCGCTAGCCCGTGCCG
TGTCGTGCAGTCAGGGCACGTACCGTCCCGTACGATGCAGAGCATAAACA
CCGGTGGGGGTCGCACTTTCGGAGTCAAACGACCCCCGCAGAGTATGATG
CCAATCGAGGAGTGTACTCGATATTTTCCGATCAAATAATACCTACCATG
TGCGATCTTTGGGGTGGCTAGAAACGAAAACGAGACAAACAACCGCCGGG
GATACGTTGCCCTCGAGTTGAATATCTCGCGTTGTGTCTCGCCGACGATA
CCCAACCTATGCACACCCAACTGTGTGTGGCACCTTGCTCCTATCACATT
CTACCTGCAGGAGAGTCATCCAGCCCCCTGGATCGAGTCCGCGATCTCAT
TACGAACGAGGGGCCGAGCGTGTTCGACCCCTCGAACCTGGGTCGCATCG
ACGACCTCTTCAGGGAGGCGGGCTCTGACGTGTACGAGCGGATGGGACCC
ATCCTCGGCGAGGTTCGCAAGAGAGCACTCGGCTGCACGAATTTTTTTCC
CGCGCATTTTGTTTTCTTTTCTTCTGCCGCGCGGGTGCTCTAACTTGCTA
ACCCACAACCTTTCCTCCAACCCTTGCATACCCGCCCCACACGATTTTGG
TCTTTCGAATTTCTTCTCCGATGCACCAATTCTGTTTTCTCTTATACTGC
CGGAAACATGTCCTGACTATTGGCTGCACATAGTCTCCGAGTCATGACAA
CCATGCTTCAGACAGTGTGCTTACCCCAAGCTAATACAAAACGTGTACGA
ACGCAGGCTGGCGACTTCGGCTCAAAAGTGGCAGACACGGCTGCGTCGTG
GGGAACTGATCTAGGTGAAAACGTCGTTTTTAATCATGTCTCGTGACCCA
AAAAACAGCTGTAAGTATTGATGTTTGTCGGTGAGTGTCTTGCGTCGATC
TCTGTTGCGGTCCATTCGATATTTGTCGCAAGTGTGAGTGGCGGGTCACG
CACAATTTCGAAAGGTACGTTGCCTATCTCCCCCAGGATGGTAGATGGAA
AATTCAGAAAATTAACCGTCAACAGACGGGTAACAAGAAAGAGGGGATTT
TTTGCATGAATCTCCTCCTCGACACGCACCGTATTTTCCTTAAATGTCAC
CCGTTCACTTCTCCAACCTCCAAATCCCCGTTTCTACAATGAGCATTTTA
TCGCTATACGACACCAAACTGATTTTCGTCCTCTCTTTCTTGTCGGGCAG
GTAGTGTTTTCGGAAGCATCGGCGAATCCGCTGGAGAAGCTTTCGGCGGA
TTAGGAGACCTCTTCTCCGACGTCGGGGGTGCTTTGGGCAGTGGCCTAGG
TGAGGTAGGGGACTGGGCGGGGGACGCGCTGGGGGACGGCGTAGACGCAG
CGAGAGGCCTGGCCGAAGTCATCGGAGAGGGCATCGGAGATGGTCTCGAC
GTAGCGGGAGATCTCGCCGGAGACGGGCTAGACGCGGCGGGCGACCTAGC
CGAAGACATCGGGGAGGGCATCGGAGCGGGCCTGGACGCAGCCGGAGATC
TCGCTGCAGACGGGCTAGACGCGGCGGGCGACCTAGCCGAAGACATCGGG
GAGGGCATGGGGGATGGCCTGGAAGCAGCCGGAGACCTTGCCGGTGGCGC
CGTGGATGCGGTCACGGATGCCGTCGATGGTGTATCAGACGACGTGGACA
TGTACGCGGGCGCAGGGCCGAGGGATCTGGACGATGAAGGGCCGACCGGG
GGCGGAAACTTTGCTATGGTGGGTACGTGTCCGCGCTCAAACACGAGTGT
TTCTTTCTTTGGCATCCACCACGGCTACCCAACAGATCCCATAAAAGATT
CAGTCTCAACGGAACATGTAAGTGCGTTACTAGCATCAAAGCAGCTCTGA
CATTTGCTTGTTAGGGGGGGGATTAGGGCGTGCTTAGTTCCCCAACATCG
AACATTGAGGGCTCTATTGTGTCATACTGGAAAGGTTCCGTCTCGAACCT
TGATTCAGACCTTTCAGGCGGTAGCAGGAGCAGCAGGGCCGGGAATGGGT
GTGGCGTCGTAG
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Coding sequence (CDS) from alignment at Scaffold_332:236978..239789+

>EsuBft111_3a-0001 ID=EsuBft111_3a-0001|Name=EsuBft111_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=897bp|location=Sequence derived from alignment at Scaffold_332:236978..239789+ (Ectocarpus subulatus male Bft15b)
ATGAACAGCACGATGATGGCTGTAGGGACAACCTCGGAGGAGGAGGAGGA
GGAGGTGGAGACACGGCGGATCACCGCGACCTGCCCGCTAACGGGGAGGG
ATCAGGACGACTACGTTGCTAGCCCGGGCGGTGACGACGGAGAGTCATCC
AGCCCCCTGGATCGAGTCCGCGATCTCATTACGAACGAGGGGCCGAGCGT
GTTCGACCCCTCGAACCTGGGTCGCATCGACGACCTCTTCAGGGAGGCGG
GCTCTGACGTGTACGAGCGGATGGGACCCATCCTCGGCGAGGCTGGCGAC
TTCGGCTCAAAAGTGGCAGACACGGCTGCGTCGTGGGGAACTGATCTAGG
TAGTGTTTTCGGAAGCATCGGCGAATCCGCTGGAGAAGCTTTCGGCGGAT
TAGGAGACCTCTTCTCCGACGTCGGGGGTGCTTTGGGCAGTGGCCTAGGT
GAGGTAGGGGACTGGGCGGGGGACGCGCTGGGGGACGGCGTAGACGCAGC
GAGAGGCCTGGCCGAAGTCATCGGAGAGGGCATCGGAGATGGTCTCGACG
TAGCGGGAGATCTCGCCGGAGACGGGCTAGACGCGGCGGGCGACCTAGCC
GAAGACATCGGGGAGGGCATCGGAGCGGGCCTGGACGCAGCCGGAGATCT
CGCTGCAGACGGGCTAGACGCGGCGGGCGACCTAGCCGAAGACATCGGGG
AGGGCATGGGGGATGGCCTGGAAGCAGCCGGAGACCTTGCCGGTGGCGCC
GTGGATGCGGTCACGGATGCCGTCGATGGTGTATCAGACGACGTGGACAT
GTACGCGGGCGCAGGGCCGAGGGATCTGGACGATGAAGGGCCGACCGGGG
GCGGAAACTTTGCTATGGTGGGGCCGGGAATGGGTGTGGCGTCGTAG
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