EsuBft111_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft111_2a-0001
Unique NameEsuBft111_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_332contigScaffold_332:242670..243276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FLJ7
ProteomeIdEsuBft111_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length40
Hectar predicted targeting categoryother localisation
Evalue4.14e-69
EggNOG OGsKOG3765@1|root,KOG3765@2759|Eukaryota
Ec32 ortholog descriptionGlycosyltransferase, family GT49
Ec32 orthologEc-17_000930.1
Date last modified2016-06-14
Date creation2016-06-14
Descriptionprotein O-linked glycosylation
COG categoryA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft111_2aEsuBft111_2aEctocarpus subulatus male Bft15bgeneScaffold_332 242670..243276 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft111_2a-0001-exonagat-exon-52121Ectocarpus subulatus male Bft15bexonScaffold_332 242670..242852 +
EsuBft111_2a-0001-exonEsuBft111_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_332 243055..243276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft111_2a-0001-cdsEsuBft111_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_332 242670..242852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft111_2a-0001EsuBft111_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_332 242670..243276 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft111_2a-0001 ID=EsuBft111_2a-0001|Name=EsuBft111_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=405bp|location=Sequence derived from alignment at Scaffold_332:242670..243276+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGAAACCCGACGACTGTGCCAGCGGGTCGACCAAGAAGTTCGAGC
AGCGCCCAGTCGTCTGAAGCAGCTCTCTGTGGACGTGGCTATCCTCGAGG
GAGCGGAGGCGGACCCTGCTAGGCACGACCACTGCGGTCCGCTGTACCCC
GTCAACACCCTGAGAAACTTGGCTCTACTACAGGCCCGGGACGACAGCCT
TCATCCCGCTCAAGCGGTATTCCTGGTTGACTGCGACTGCCTGCCGTCAG
AGCACCTGCTCGAGGAGCTCCAGTCGCACGAGGTCCAGGACAGACTCAAC
GCCGAGAGTAATGCGAGGCCAGCGGCCGTCGTCATCCCTTGTCTGGAGTT
CGCGCCGGGCTCAGTATCTGCCAGGGTAAGCCTTGCAGGAATCCGACAAA
GCTGA
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protein sequence of EsuBft111_2a-0001

>EsuBft111_2 ID=EsuBft111_2|Name=EsuBft111_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=134bp
MSETRRLCQRVDQEVRAAPSRLKQLSVDVAILEGAEADPARHDHCGPLYP
VNTLRNLALLQARDDSLHPAQAVFLVDCDCLPSEHLLEELQSHEVQDRLN
AESNARPAAVVIPCLEFAPGSVSARVSLAGIRQS
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mRNA from alignment at Scaffold_332:242670..243276+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft111_2a-0001 ID=EsuBft111_2a-0001|Name=EsuBft111_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=607bp|location=Sequence derived from alignment at Scaffold_332:242670..243276+ (Ectocarpus subulatus male Bft15b)
ATGAGCGAAACCCGACGACTGTGCCAGCGGGTCGACCAAGAAGTTCGAGC
AGCGCCCAGTCGTCTGAAGCAGCTCTCTGTGGACGTGGCTATCCTCGAGG
GAGCGGAGGCGGACCCTGCTAGGCACGACCACTGCGGTCCGCTGTACCCC
GTCAACACCCTGAGAAACTTGGCTCTACTACAGGTACCACCACCCAACTG
CAACGCAATTGAACAAAAGCTGAACGTACAAATTGTCTTAACCCAGCTAT
CACTAAGCAAAGCTTGATCGATGGTAGTATTGTTGGGCCCGGAGTATCTT
AGGCAAACCCAAAATATTTTGTTCCTTCGCCCAGCCACCAGTTATCGCAC
CTGACGGCTCATTGTAACAACGCGACGCTCGACAGGCCCGGGACGACAGC
CTTCATCCCGCTCAAGCGGTATTCCTGGTTGACTGCGACTGCCTGCCGTC
AGAGCACCTGCTCGAGGAGCTCCAGTCGCACGAGGTCCAGGACAGACTCA
ACGCCGAGAGTAATGCGAGGCCAGCGGCCGTCGTCATCCCTTGTCTGGAG
TTCGCGCCGGGCTCAGTATCTGCCAGGGTAAGCCTTGCAGGAATCCGACA
AAGCTGA
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Coding sequence (CDS) from alignment at Scaffold_332:242670..243276+

>EsuBft111_2a-0001 ID=EsuBft111_2a-0001|Name=EsuBft111_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=405bp|location=Sequence derived from alignment at Scaffold_332:242670..243276+ (Ectocarpus subulatus male Bft15b)
ATGAGCGAAACCCGACGACTGTGCCAGCGGGTCGACCAAGAAGTTCGAGC
AGCGCCCAGTCGTCTGAAGCAGCTCTCTGTGGACGTGGCTATCCTCGAGG
GAGCGGAGGCGGACCCTGCTAGGCACGACCACTGCGGTCCGCTGTACCCC
GTCAACACCCTGAGAAACTTGGCTCTACTACAGGCCCGGGACGACAGCCT
TCATCCCGCTCAAGCGGTATTCCTGGTTGACTGCGACTGCCTGCCGTCAG
AGCACCTGCTCGAGGAGCTCCAGTCGCACGAGGTCCAGGACAGACTCAAC
GCCGAGAGTAATGCGAGGCCAGCGGCCGTCGTCATCCCTTGTCTGGAGTT
CGCGCCGGGCTCAGTATCTGCCAGGGTAAGCCTTGCAGGAATCCGACAAA
GCTGA
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