EsuBft111_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft111_10a-0001
Unique NameEsuBft111_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_332contigScaffold_332:91597..94791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft111_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length110
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionorigin-binding protein
Ec32 orthologEc-05_007030.2
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft111_10aEsuBft111_10aEctocarpus subulatus male Bft15bgeneScaffold_332 91597..94791 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft111_10a-0001EsuBft111_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_332 93897..94520 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft111_10a-0001-exonagat-exon-52234Ectocarpus subulatus male Bft15bexonScaffold_332 91597..91690 -
EsuBft111_10a-0001-exonagat-exon-52233Ectocarpus subulatus male Bft15bexonScaffold_332 93329..94051 -
EsuBft111_10a-0001-exonEsuBft111_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_332 94505..94791 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft111_10a-0001-exonagat-three_prime_utr-1118Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_332 91597..91690 -
EsuBft111_10a-0001-exonagat-three_prime_utr-1119Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_332 93329..93896 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft111_10a-0001-cdsEsuBft111_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_332 93897..94051 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft111_10a-0001-exonagat-five_prime_utr-712Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_332 94521..94791 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft111_10a-0001 ID=EsuBft111_10a-0001|Name=EsuBft111_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1104bp|location=Sequence derived from alignment at Scaffold_332:91597..94791- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGGCTGTGGGTCAACAGTCCTCCCAGAAACTTCCCCTGTCCGCAGGTGC
TGTTGTTTTTTCGTGGTGCGCTGCGTTACAGCTAGCTGCGCAGCTTGCTT
GTGACAAGGGGCTCTCACTGCCGCTGCTGCTGTTGAGTGTGCGTGCGTGC
GTACGCGTGTCCGTGTCTGCGTCGCTCCCTCAACCCCAGCACACGAAATC
GCACCACACCAGAACGGAGCCATGAAGTGATTACTGTACACTGGCCGACG
ACAGCCTCTGAACGAAGTGCTATGTCGCGCTTCAAGCACGACGCAGCGAT
TGCACGCAAGATTCAACAAGAAAACAAACAGATCGGGATGTGCCGCGGAT
CGGCTCAAGAGCTCAAGACCCTCGAGAAGCTGGCTCTGGCGATCGTTGGG
GAGGAAAAGGTGGGGATATACTACGGCAACTCTCCGAACTGATCAATGAT
AGCCGTAGAGTACGCCCACTGGCCGAAGTACATGCTCATCGCCTTCACGA
GCACAATCATATGCTGTAAAGTGTCGAAGATGATGTGCCCATCGACACGG
TGTGCATGCCCCCTTCGAGGGGGGGGATGCTTCCCGCGAGACATGAATCA
GATGAAAAGCTACTTCCACACCATCACCAGCGGCCGGGTCGTGGTGAAGA
TACCACGGGAATGTTTAGTATAGTATGTACTATTAGTACTGACCCGAGTA
TTGAGTAAGTATCTGGCTCTTTTCGCCCAGTAGAGTAATACTCACACTTA
AGTACAGCTTTTCATACTCTACTAAGAATACTGTGGCGTTTAGTACAGCT
CTTCGTACTAAACCTTTTGTAAGTACGGCTCTTCAATACTCTACTAAACA
TTTTTTGAGTATAGTACGGCTTTTCATACTCTACTCATACTCACATTTTA
GTATGGCTCTTCATACTCTACTCAACATACTCATGCGGTATAGTACAGCT
TTTCATACTCTACTAAACATACTCTTTGAGTTCAGTACCTGACCTCTGCA
CTCTACTCAGGTGAGTAGAGTATTCACCTCTCTCAAACTCTACTCTACTC
AGCCGTTAGTACAGGTTCTCCATACTCTACTAAACATACTATACTATACT
AAAC
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protein sequence of EsuBft111_10a-0001

>EsuBft111_10 ID=EsuBft111_10|Name=EsuBft111_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=56bp
MSRFKHDAAIARKIQQENKQIGMCRGSAQELKTLEKLALAIVGEEKVGIY
YGNSPN
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mRNA from alignment at Scaffold_332:91597..94791-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft111_10a-0001 ID=EsuBft111_10a-0001|Name=EsuBft111_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3195bp|location=Sequence derived from alignment at Scaffold_332:91597..94791- (Ectocarpus subulatus male Bft15b)
TTGGCTGTGGGTCAACAGTCCTCCCAGAAACTTCCCCTGTCCGCAGGTGC
TGTTGTTTTTTCGTGGTGCGCTGCGTTACAGCTAGCTGCGCAGCTTGCTT
GTGACAAGGGGCTCTCACTGCCGCTGCTGCTGTTGAGTGTGCGTGCGTGC
GTACGCGTGTCCGTGTCTGCGTCGCTCCCTCAACCCCAGCACACGAAATC
GCACCACACCAGAACGGAGCCATGAAGTGATTACTGTACACTGGCCGACG
ACAGCCTCTGAACGAAGTGCTATGTCGCGCTTCAAGCGTTCGGGAGAGTG
ACGGGGGGTTCGAACTCACGGCCTTTCTTTTTGACTAGCGGTTTCGATTA
CCAATACTGTAGTAACTAGAAGACCACTGGGGCGGACGGCTCTGCCATGT
CGAAACAGGGAATGTCAATTTTAGTCGAAACATCGCCTGAAACGCCGCAC
ATCAACACACACGAACGAGGAGACAAAAAACACACAGCAAACACAGCAAG
CACGTGCTGCTGTGATTGGAACGTACGCCAAGTACGAAGCGACTCTCTTC
ATATGAACTCGGCAAACAGCTGCAGGGGGCGGGGACACAGTACCTCCCTA
TCCACCTCGCCCGCCCCTTGTACCAAGCGAGGCACAGCCGCACTAGCACA
CGAAAAATGCTGCCGTGATCACACGGGGGGGGGGGGNGGGGGGGGGGGGG
GGGGGGGGGGGGGGGCAGGAGCTCTACATGAAGTGAACAGACGACGCAGC
GATTGCACGCAAGATTCAACAAGAAAACAAACAGATCGGGATGTGCCGCG
GATCGGCTCAAGAGCTCAAGACCCTCGAGAAGCTGGCTCTGGCGATCGTT
GGGGAGGAAAAGGTGGGGATATACTACGGCAACTCTCCGAACTGATCAAT
GATAGCCGTAGAGTACGCCCACTGGCCGAAGTACATGCTCATCGCCTTCA
CGAGCACAATCATATGCTGTAAAGTGTCGAAGATGATGTGCCCATCGACA
CGGTGTGCATGCCCCCTTCGAGGGGGGGGATGCTTCCCGCGAGACATGAA
TCAGATGAAAAGCTACTTCCACACCATCACCAGCGGCCGGGTCGTGGTGA
AGATACCACGGGAATGTTTAGTATAGTATGTACTATTAGTACTGACCCGA
GTATTGAGTAAGTATCTGGCTCTTTTCGCCCAGTAGAGTAATACTCACAC
TTAAGTACAGCTTTTCATACTCTACTAAGAATACTGTGGCGTTTAGTACA
GCTCTTCGTACTAAACCTTTTGTAAGTACGGCTCTTCAATACTCTACTAA
ACATTTTTTGAGTATAGTACGGCTTTTCATACTCTACTCATACTCACATT
TTAGTATGGCTCTTCATACTCTACTCAACATACTCATGCGGTATAGTACA
GCTTTTCATACTCTACTAAACATACTCTTTGAGTTCAGTACCTGACCTCT
GCACTCTACTCAGGTGAGTAGAGTATTCACCTCTCTCAAACTCTACTCTA
CTCAGCCGTTAGTACAGGTTCTCCATACTCTACTAAACATACTCTTTGAG
TTCAGTACCTGACCTCTGCACTCTACTCAGGTGAGTAGAGTATTCACCTC
TCTCAAACTCTACTCTACTCAGCCGTTAGTACAGGTTCTCCATACTCTAC
TAAACATACTCTTTGAGTTCAGTACCTGACCTCTGCACTCTACTCAGGTG
AGTAGAGTATTCACCTCTCTCAAACTCTACTCTACTCAGCCGTTAGTACA
GGTTCTCCATACTCTACTAAACATACTCTTTGAGTTCAGTACCTGACCTC
TGCACTCTACTCAGGTGAGTAGAGTATTCACCTCTCTCAAACTCTACTCT
ACTCAGCCGTTAGTACAGGTTCTCCATACTCTACTAAACATACTCTTTGA
GTTCAGTACCTGACCTCTGCACTCTACTCAGGTGAGTAGAGTATTCACCT
CTCTCAAACTCTACTCTACTCAGCCGTTAGTACAGGTTCTCCATACTCTA
CTAAACATACTCTTTGAGTTCAGTACCTGACCTCTGCACTCTACTCAGGT
GAGTAGAGTATTCACCTCTCTCAAACTCTACTCTACTCAGCCGTTAGTAC
AGGTTCTCCATACTCTACTAAACATACTCTTTGAGTTCAGTACCTGACCT
CTGCACTCTACTCAGGTGAGTAGAGTATTCACCTCTCTCAAACTCTACTC
TACTCAGCCGTTAGTACAGGTTCTCCATACTCTACTAAACATACTCTTTG
AGTTCAGTACCTGACCTCTGCACTCTACTCAGGTGAGTAGAGTATTCACC
TCTCTCAAACTCTACTCTACTCAGCCGTTAGTACAGGTTCTCCATACTCT
ACTAAACATACTCTTTGAGTTCAGTACCTGACCTCTGCACTCTACTCAGG
TGAGTAGAGTATTCACCTCTCTCAAACTCTACTCTACTCAGCCGTTAGTA
CAGGTTCTCCATACTCTACTAAACATACTCTTTGAGTTCAGTACCTGACC
TCTGCACTCTACTCAGGTGAGTAGAGTATTCACCTCTCTCAAACTCTACT
CTACTCAGCCGTTAGTACAGGTTCTCCATACTCTACTAAACATACTCTTT
GAGTTCAGTACCTGACCTCTGCACTCTACTCAGGTGAGTAGAGTATTCAC
CTCTCTCAAACTCTACTCTACTCAGCCGTTAGTACAGGTTCTCCATACTC
TACTAAACATACTCTTTGAGTTCAGTACCTGACCTCTGCACTCTACTCAG
GTGAGTAGAGTATTCACCTCTCTCAAACTCTACTCTACTCAGCCGTTAGT
ACAGGTTCTCCATACTCTACTAAACATACTCTTTGAGTTCAGTACCTGAC
CTCTGCACTCTACTCAGGTGAGTAGAGTATTCACCTCTCTCAAACTCTAC
TCTACTCAGCCGTTAGTACAGGTTCTCCATACTCTACTAAACATACTCTT
TGAGTTCAGTACCTGACCTCTGCACTCTACTCAGGTGAGTAGAGTATTCA
CCTCTCTCAAACTCTACTCTACTCAGCCGTTAGTACAGGTTCTCCATACT
CTACTAAACATACTCTTTGAGTTCAGTACCTGACCTCTGCACTCTACTCA
GGTGAGTAGAGTATTCACCTCTCTCAAACTCTACTCTACTCAGCCGTTAG
TACAGGTTCTCCATACTCTACTAAACATACTATACTATACTAAAC
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Coding sequence (CDS) from alignment at Scaffold_332:91597..94791-

>EsuBft111_10a-0001 ID=EsuBft111_10a-0001|Name=EsuBft111_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=171bp|location=Sequence derived from alignment at Scaffold_332:91597..94791- (Ectocarpus subulatus male Bft15b)
ATGTCGCGCTTCAAGCACGACGCAGCGATTGCACGCAAGATTCAACAAGA
AAACAAACAGATCGGGATGTGCCGCGGATCGGCTCAAGAGCTCAAGACCC
TCGAGAAGCTGGCTCTGGCGATCGTTGGGGAGGAAAAGGTGGGGATATAC
TACGGCAACTCTCCGAACTGA
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