EsuBft1114_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1114_2a-0001
Unique NameEsuBft1114_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_290contigScaffold_290:97761..101772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog126957.SMAR000796-PA
ProteomeIdEsuBft1114_2
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsIPR027417
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl33208|Metazoa
Length181
Hectar predicted targeting categorysignal peptide
Evalue1.63e-05
EggNOG OGsCOG4088@1|root,KOG4622@2759|Eukaryota,38G32@33154|Opisthokonta,3BG21@33208|Metazoa,3CUPG@33213|Bilateria,420KK@6656|Arthropoda
Ec32 ortholog descriptionL-seryl-tRNA(Sec) kinase
Ec32 orthologEc-03_001030.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred namePSTK
KEGG rclassRC00002,RC00017
KEGG koko:K10837
KEGG ReactionR08223
KEGG Pathwayko00450,ko00970,map00450,map00970
GOsGO:0000049,GO:0001514,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006414,GO:0006417,GO:0006451,GO:0006518,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032268,GO:0034248,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0097159,GO:0098620,GO:0140098,GO:0140101,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000112
EC2.7.1.164
DescriptionChromatin associated protein KTI12
COG categoryF
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1114_2aEsuBft1114_2aEctocarpus subulatus male Bft15bgeneScaffold_290 97761..101772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1114_2a-0001EsuBft1114_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_290 97761..101585 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1114_2a-0001-exonagat-exon-34302Ectocarpus subulatus male Bft15bexonScaffold_290 97761..98478 +
EsuBft1114_2a-0001-exonagat-exon-34303Ectocarpus subulatus male Bft15bexonScaffold_290 98897..98988 +
EsuBft1114_2a-0001-exonagat-exon-34301Ectocarpus subulatus male Bft15bexonScaffold_290 99272..99652 +
EsuBft1114_2a-0001-exonEsuBft1114_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_290 100135..100197 +
EsuBft1114_2a-0001-exonagat-exon-34300Ectocarpus subulatus male Bft15bexonScaffold_290 101214..101772 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1114_2a-0001-cdsEsuBft1114_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_290 97761..98478 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1114_2a-0001-exonagat-three_prime_utr-1079Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_290 101586..101772 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1114_2a-0001 ID=EsuBft1114_2a-0001|Name=EsuBft1114_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1813bp|location=Sequence derived from alignment at Scaffold_290:97761..101772+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGATGTGTGCTGGTATCTTGCTGCGGACTCCCCGCAGCCGGCAAAAC
CACTTTCTGCCGCAGCATCGCCGCCAGTAACAGGTTCCCTACACAAGGAG
CAACCGACACAGCGACCGATACACGTGTAGAACGAGACAGTTCGGACTGT
GGGCCCATCATCAATGGCGGTCCTCAGATTTGGGTAAGCCACGTTTGCTT
CGACGAGTACATTAACAGCGCCCATCGACCGCGGCGGCAGCACAGCCGTA
GCAGCAACGACGACGAACCATCCTTCAACGCTCGAATATCTAGCCATCTC
TCCCCTGCGAGCGACGTACACCATAAGAAGGATCAGGGGGCAGGCGTTGA
GTCAGGAGAAAAGGCGGAACTCAATCTTGGCCGACAAGCAGGCGCTGACG
AGCGAGATATGAAGGAGTCAACAACATATCCACAGACGCACGAAGCAACG
GGAACATATGCCGTCGAGTCACAGGGAGCGACAGAAACAACACCACATAC
GTCACTTGCAGAACCTCCAGGCGCTTCAGAGGGCGGCGAGGACGGCGCCA
GATGGTGGCACGACGGGCGACGGGCTGCAATGGCCGAGTTAGAGGCGCTA
GCGAAGGGGGCGGAGTCAGGGGCGAGGGCAGGACCCAAAACCGCGGTAAT
CTCTGGCGGGACGGTTTCTTCCGCTTGCGCAATGCCACCGGCGATGCTTT
CGGAGGAAATGAGAGAAGATGGGTGCGGTTATGCGCAGGTTTTCTTTCCC
ACGGATGTGGAAATCGCAGTGAAGAGAAACACGGCGAGGGGAACGTCAGT
CTCTGAGGCGGTTATCCGAAAAATGGCCGCGAACATCCAACCTCCGGACC
CCAAGCGTTTCAAGTGGGAACGCCACACCGTGGTTGTCAGCTCTCCATCG
GGATCTCGCTCTCCGCAAGAAGGAACAGAAATGGTGCCACCACTGAAGCC
CCATCGAACACCACCGGATACTGCTAACTTGTATCGAAATCCGCCTCGTG
GCAGCAGTCGTGCCAAGATACTCAGCCCTTCGGGAGGGGACTTCGATGCG
GGTGACAACGTCAGTAAGGTGGCGGAAGGTTCCACGACTGTCGTTCACTC
GCAACGGAGGTTTTGGTGCGTCATAGCCACCGCCGCGGGCGAAGATCCAA
AGCCACTTGCTTCGGATTCTGCCTCACGTGTTTTGGACAAGGAAGCGGAC
AGAGAGGCGACGAAGGCGAGCGTTATGCACCAGTACGACCTTCACCTGCG
CGAGGCGGTCAAGCGCGTGGCCGAAGCAGCCGCCGGCGCTGGCCTTTCCC
GTGATGTTCATCGCGTGGTGATGAAGGCATGCTCGGCGTCAAGAAAACAT
GCGATACGCCGCGCAAGATCCACCGCCGACCAACGCAGCGTGAGCACGTC
CAATCAAAGCACCGCCGGGAACGTCGCGGTTTGCCACGACAGCTATCAAG
GTTGCACGGCGGGTGGTGGTGACGGGTGTCCGACATCCGGGTCCCTATCT
GATACGGACCCCTTCGCTCGCGAGTTCGAGAATGCCCTGGGTACTATCGA
CGTGGCGGAATCGGTCAAAGTGCAACTCGTCGTGGCTGCAGAGGGTGTTG
CGAGAAACTCCTTTCGACTATTTTGACATGCAGGGTACCCATGGATTTGG
TGAAAGAACTGACGAATTCGTGCACCTCAAACGAAATCGTCTCACATGCT
GGAGATGGTGCTGAAAGGAGTTGTGGAGTACTGCCGAATCCGCCTGTTTG
TCCGAAAGCGCCTCACCAGACTGGGATCCTTGCAAATACAATGGACATTG
TTAAAAATACAGT
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protein sequence of EsuBft1114_2a-0001

>EsuBft1114_2 ID=EsuBft1114_2|Name=EsuBft1114_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=541bp
MRCVLVSCCGLPAAGKTTFCRSIAASNRFPTQGATDTATDTRVERDSSDC
GPIINGGPQIWVSHVCFDEYINSAHRPRRQHSRSSNDDEPSFNARISSHL
SPASDVHHKKDQGAGVESGEKAELNLGRQAGADERDMKESTTYPQTHEAT
GTYAVESQGATETTPHTSLAEPPGASEGGEDGARWWHDGRRAAMAELEAL
AKGAESGARAGPKTAVISGGTVSSACAMPPAMLSEEMREDGCGYAQVFFP
TDVEIAVKRNTARGTSVSEAVIRKMAANIQPPDPKRFKWERHTVVVSSPS
GSRSPQEGTEMVPPLKPHRTPPDTANLYRNPPRGSSRAKILSPSGGDFDA
GDNVSKVAEGSTTVVHSQRRFWCVIATAAGEDPKPLASDSASRVLDKEAD
REATKASVMHQYDLHLREAVKRVAEAAAGAGLSRDVHRVVMKACSASRKH
AIRRARSTADQRSVSTSNQSTAGNVAVCHDSYQGCTAGGGDGCPTSGSLS
DTDPFAREFENALGTIDVAESVKVQLVVAAEGVARNSFRLF
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mRNA from alignment at Scaffold_290:97761..101772+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1114_2a-0001 ID=EsuBft1114_2a-0001|Name=EsuBft1114_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4012bp|location=Sequence derived from alignment at Scaffold_290:97761..101772+ (Ectocarpus subulatus male Bft15b)
ATGCGATGTGTGCTGGTATCTTGCTGCGGACTCCCCGCAGCCGGCAAAAC
CACTTTCTGCCGCAGCATCGCCGCCAGTAACAGGTTCCCTACACAAGGAG
CAACCGACACAGCGACCGATACACGTGTAGAACGAGACAGTTCGGACTGT
GGGCCCATCATCAATGGCGGTCCTCAGATTTGGGTAAGCCACGTTTGCTT
CGACGAGTACATTAACAGCGCCCATCGACCGCGGCGGCAGCACAGCCGTA
GCAGCAACGACGACGAACCATCCTTCAACGCTCGAATATCTAGCCATCTC
TCCCCTGCGAGCGACGTACACCATAAGAAGGATCAGGGGGCAGGCGTTGA
GTCAGGAGAAAAGGCGGAACTCAATCTTGGCCGACAAGCAGGCGCTGACG
AGCGAGATATGAAGGAGTCAACAACATATCCACAGACGCACGAAGCAACG
GGAACATATGCCGTCGAGTCACAGGGAGCGACAGAAACAACACCACATAC
GTCACTTGCAGAACCTCCAGGCGCTTCAGAGGGCGGCGAGGACGGCGCCA
GATGGTGGCACGACGGGCGACGGGCTGCAATGGCCGAGTTAGAGGCGCTA
GCGAAGGGGGCGGAGTCAGGGGCGAGGGCAGGACCCAAAACCGCGGTAAT
CTCTGGCGGGACGGTTTCTTCCGCTTGCGCAATGCCACCGGCGATGCTTT
CGGAGGAAATGAGAGAAGGTGTCACTAATAGGGCTAGACTGTCGACGCAA
GAGGCGAGTACTTCTGCCGATTCCCCCAAGCGGACAGAGGCGGTGCATGT
GGTGCTTGCGGACGACAACATGCACTTCCGAAGCATGCGGCACGAAGTAT
TCCGCCTGGCTAGACAATGTGCGTGCGAATTTGTGACGGATCATGGAAGG
CATAGACTGGACTTGTGAGATGATGTTCTCCTGCTAATGTCGAAGTGTAA
ACGAAACTCCAACACGTCTCTGACAGCGTTAGACTTTGGTCTCTGCTCGA
TTCGTAAACGCCGCACCCGGCTTTCGTCAATCAAGATGACCCGCGGATCT
GTTGTTTTACAGTGTCAGACCGAACGCGGGTAACTGACGACCTAACAGCT
CATACTATGACACGCCCTTGTTTGTCTTGCCGGCAGATGGGTGCGGTTAT
GCGCAGGTTTTCTTTCCCACGGATGTGGAAATCGCAGTGAAGAGAAACAC
GGCGAGGGGAACGTCAGTCTCTGAGGCGGTAAGGCTGCAAGCCGCGATCG
TTGCAGGCTCGAAACGATTCCATCGGACCGTTTTCATGCCGCGTGGGATG
ATCGAATGTTTTCGTATGGAGGAACTATTTGTAGTGCGGTTCCATGCCAT
ACGACAGCAGTGTGCACCTCAGAGAGACACCCCGGGTATACATGTCCCTG
ACCGTAAAACGTTTTGCTGAACAACACCTTTTCATGGTCCTTATTCTTGT
TTCCAAGATCAAATCATTGCTCTGCTCTTCCGCCTGGTTTGTCTACCTCC
ACGTCCCGTAGGTTATCCGAAAAATGGCCGCGAACATCCAACCTCCGGAC
CCCAAGCGTTTCAAGTGGGAACGCCACACCGTGGTTGTCAGCTCTCCATC
GGGATCTCGCTCTCCGCAAGAAGGAACAGAAATGGTGCCACCACTGAAGC
CCCATCGAACACCACCGGATACTGCTAACTTGTATCGAAATCCGCCTCGT
GGCAGCAGTCGTGCCAAGATACTCAGCCCTTCGGGAGGGGACTTCGATGC
GGGTGACAACGTCAGTAAGGTGGCGGAAGGTTCCACGACTGTCGTTCACT
CGCAACGGAGGTTTTGGTGCGTCATAGCCACCGCCGCGGGCGAAGATCCA
AAGCCACTTGCTTCGGATTCTGCCTCACGTGTTTTGGACAAGGTGAACAA
TTGTGCCGCTGGCTATGAACATGACCAGCCTGCAAGAGTGCAGTCTAATG
TGTTCAATGTCCTTTTGCTTTCGTCCTTACACGCACGTCATTGTTTCAGC
AGAGCTTTGTTTCAGCAGAGCTTTTGGGAGTTCGCAAGCTGCTTGTTTGC
AAAGTTACCTGGCATTTCTCTTGGCGGTGTAGGGCGTAGGTTCCGTTAAG
AGCATCTGCCTTGAAGCTTTTCCTATGAAGAGTCTGCTTGGAAGGTGGTT
ACAGCGTCGCGGGGCGGCCTTCCTTCTCCGTCCTCGTTGGTGAACGTGAT
TAGAAACCTCTCAGCGTGCAGAGCACCCACCCCATGCTGTTGTTTTTCCT
GTGTCGTGTCGAGGGGTGCGATCCTTTGTCAACGATACGGACGCTGTAGG
AAGCCCCTGAAATGCTCCAACGACCACTTTGTGCTCGAACGTATGTATTT
GCACTATGTACGCTGACCAACCAGGAAGCGGACAGAGAGGCGACGAAGGC
GAGCGTTATGCACCAGTACGACCTTCACCTGCGCGAGGTGCGTTCTCTTC
AATATATATATTTTATGGCGCCACTCTGGTTGCAGAGACACCGAACATGC
CCCGGCCGGAAAGTTTGTTTTCGCACAACACGTCCTCTTTCCCACGCGTG
TGGTGCAGCTTCGTTGGGTTAAATATTGCTAGCTTGTGACAATGGTTTTG
GAGAGCATGGGAGGAAATGTTTGGTCCAGACCGTACCGGCTTTTAGGGGT
AAACAAAACACAACATGTGGTATGATCCACGCCCAACACGTTTTCCACCC
ACGTTTTCGGGTGAAAGCTTCGGACCAGAACCTATTCAACCGATGAACTG
GGCACTTTAGTGAGCGCCAAGATAGACGCAGCACGACCTTTCGAGCAAAA
GCTATAAGCTCTCTTACGATAGAATCAAGTCGTCACCAAGTGCTACACTC
AACGTGATTGCGTGCACAGGTCTGGGGCAACCCTACACTTGTGATAAATA
CGGAGTATAAACATATCGAACATACTTTTTTTTCGTTTTCTCCGACGAGG
GCGGAAATGGAAGGTCCTGGAGGTGAAATTATGAAATCGTTTGTAGCACT
CTATTGTGTTGTTTCTTTTTCCTTCCAGGAACAACCGACCTGAACCTTTG
TTCTTTTTAGTTGTCAGAATCTCCTTGACTTTGATTCTTGTTCGAACCCA
GAAAATGATTCGAATTGGCAAAGTGATGGTGCTGGACAAATCCGTTGAGG
TATTGGTAGCAAGCGAGCACCAATTCTTCGAAGATTGAGATAAGGCCAAA
AAATATCCCGCCGTCAGAACGTGTGCTGGGATGGAATGTAAAGGTAATTT
CCACTTCTGAGCGAGCGACAACTCTACAAGGAGATACAAACTCTCCGTGG
CTGGTGACATGGCCCATTGACTAATGGTCTACCAACAGAATGACAGTCAG
TGTTTACCCACCATGCGGGTCATCGAGAGTTATAGGTATACGTATGACCA
TGCAAAGAGCGAATCATCCGTTCTCCTCCACTCCGTGCTGTTGAAAACCC
TAGGCGGTCAAGCGCGTGGCCGAAGCAGCCGCCGGCGCTGGCCTTTCCCG
TGATGTTCATCGCGTGGTGATGAAGGCATGCTCGGCGTCAAGAAAACATG
CGATACGCCGCGCAAGATCCACCGCCGACCAACGCAGCGTGAGCACGTCC
AATCAAAGCACCGCCGGGAACGTCGCGGTTTGCCACGACAGCTATCAAGG
TTGCACGGCGGGTGGTGGTGACGGGTGTCCGACATCCGGGTCCCTATCTG
ATACGGACCCCTTCGCTCGCGAGTTCGAGAATGCCCTGGGTACTATCGAC
GTGGCGGAATCGGTCAAAGTGCAACTCGTCGTGGCTGCAGAGGGTGTTGC
GAGAAACTCCTTTCGACTATTTTGACATGCAGGGTACCCATGGATTTGGT
GAAAGAACTGACGAATTCGTGCACCTCAAACGAAATCGTCTCACATGCTG
GAGATGGTGCTGAAAGGAGTTGTGGAGTACTGCCGAATCCGCCTGTTTGT
CCGAAAGCGCCTCACCAGACTGGGATCCTTGCAAATACAATGGACATTGT
TAAAAATACAGT
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Coding sequence (CDS) from alignment at Scaffold_290:97761..101772+

>EsuBft1114_2a-0001 ID=EsuBft1114_2a-0001|Name=EsuBft1114_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1626bp|location=Sequence derived from alignment at Scaffold_290:97761..101772+ (Ectocarpus subulatus male Bft15b)
ATGCGATGTGTGCTGGTATCTTGCTGCGGACTCCCCGCAGCCGGCAAAAC
CACTTTCTGCCGCAGCATCGCCGCCAGTAACAGGTTCCCTACACAAGGAG
CAACCGACACAGCGACCGATACACGTGTAGAACGAGACAGTTCGGACTGT
GGGCCCATCATCAATGGCGGTCCTCAGATTTGGGTAAGCCACGTTTGCTT
CGACGAGTACATTAACAGCGCCCATCGACCGCGGCGGCAGCACAGCCGTA
GCAGCAACGACGACGAACCATCCTTCAACGCTCGAATATCTAGCCATCTC
TCCCCTGCGAGCGACGTACACCATAAGAAGGATCAGGGGGCAGGCGTTGA
GTCAGGAGAAAAGGCGGAACTCAATCTTGGCCGACAAGCAGGCGCTGACG
AGCGAGATATGAAGGAGTCAACAACATATCCACAGACGCACGAAGCAACG
GGAACATATGCCGTCGAGTCACAGGGAGCGACAGAAACAACACCACATAC
GTCACTTGCAGAACCTCCAGGCGCTTCAGAGGGCGGCGAGGACGGCGCCA
GATGGTGGCACGACGGGCGACGGGCTGCAATGGCCGAGTTAGAGGCGCTA
GCGAAGGGGGCGGAGTCAGGGGCGAGGGCAGGACCCAAAACCGCGGTAAT
CTCTGGCGGGACGGTTTCTTCCGCTTGCGCAATGCCACCGGCGATGCTTT
CGGAGGAAATGAGAGAAGATGGGTGCGGTTATGCGCAGGTTTTCTTTCCC
ACGGATGTGGAAATCGCAGTGAAGAGAAACACGGCGAGGGGAACGTCAGT
CTCTGAGGCGGTTATCCGAAAAATGGCCGCGAACATCCAACCTCCGGACC
CCAAGCGTTTCAAGTGGGAACGCCACACCGTGGTTGTCAGCTCTCCATCG
GGATCTCGCTCTCCGCAAGAAGGAACAGAAATGGTGCCACCACTGAAGCC
CCATCGAACACCACCGGATACTGCTAACTTGTATCGAAATCCGCCTCGTG
GCAGCAGTCGTGCCAAGATACTCAGCCCTTCGGGAGGGGACTTCGATGCG
GGTGACAACGTCAGTAAGGTGGCGGAAGGTTCCACGACTGTCGTTCACTC
GCAACGGAGGTTTTGGTGCGTCATAGCCACCGCCGCGGGCGAAGATCCAA
AGCCACTTGCTTCGGATTCTGCCTCACGTGTTTTGGACAAGGAAGCGGAC
AGAGAGGCGACGAAGGCGAGCGTTATGCACCAGTACGACCTTCACCTGCG
CGAGGCGGTCAAGCGCGTGGCCGAAGCAGCCGCCGGCGCTGGCCTTTCCC
GTGATGTTCATCGCGTGGTGATGAAGGCATGCTCGGCGTCAAGAAAACAT
GCGATACGCCGCGCAAGATCCACCGCCGACCAACGCAGCGTGAGCACGTC
CAATCAAAGCACCGCCGGGAACGTCGCGGTTTGCCACGACAGCTATCAAG
GTTGCACGGCGGGTGGTGGTGACGGGTGTCCGACATCCGGGTCCCTATCT
GATACGGACCCCTTCGCTCGCGAGTTCGAGAATGCCCTGGGTACTATCGA
CGTGGCGGAATCGGTCAAAGTGCAACTCGTCGTGGCTGCAGAGGGTGTTG
CGAGAAACTCCTTTCGACTATTTTGA
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