EsuBft1114_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1114_10a-0001
Unique Name	EsuBft1114_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_290	contig	Scaffold_290:2427..4211 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1114_10
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	117
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1114_10a	EsuBft1114_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_290 2427..4211 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1114_10a-0001-exon	EsuBft1114_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_290 2427..3217 -
EsuBft1114_10a-0001-exon	agat-exon-34347	Ectocarpus subulatus male Bft15b	exon	Scaffold_290 3832..4211 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1114_10a-0001-exon	agat-three_prime_utr-1078	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_290 2427..3070 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1114_10a-0001-cds	EsuBft1114_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_290 3071..3217 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1114_10a-0001-exon	agat-five_prime_utr-683	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_290 4192..4211 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1114_10a-0001	EsuBft1114_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_290 3071..4191 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_290:2427..4211-
coding sequence from alignment at Scaffold_290:2427..4211-

spliced messenger RNA

>EsuBft1114_10a-0001 ID=EsuBft1114_10a-0001|Name=EsuBft1114_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1171bp|location=Sequence derived from alignment at Scaffold_290:2427..4211- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGCAGTTTACGTCGACAATAATGGACGACATGGACGACGTAGCCGCGTTC
TGGCAGCACCATGCTGAGCGTTTCTGTCCACAGGGCAACCCGCTCAACGT
TTGGGAAGAATTACTGCTCATAGCAACACAAACGCCTGAGCGTTTCCGCG
AAGCTTTGCAAGCAGCCGCAGTCGCTGTTGGTGCCCGGTACTGCAACCAC
GATACTCCGCCGGGTCCGCTCCCTGATATCAGCAAACTGCCGGAGAGGCA
GGCCGCCGCACAGCAACACGCTGGATTATGCGGAAAGTACCACGCGGAAC
ACATCGCCAACATCGACGTCACCATGGTAGAAGAGAGGGCAGCAGGAGCT
GAGATCACAACGAAAAGAATGAGGAATCAGGCCTGCTACGACGCCGGGAT
GGCGCTCAACGCGCGAGGCCGTGGGGTTCAGCTGAGGAGGCAGGAGTGCT
TCACCCAGGCCTGCCGCGCGGTCTGGCCTGACGACCAGCCGCTGCCCGCA
GCTGTACTTGCCGCTCTTTCGATGTAGTGAGTGACGCACGTGCCATCGGC
TACGCACGCGGGGCAAGGTAGCTATGTTGTCTGTTTTGATGAAGCTGAGA
CCGGCGGGCGAATGTGCTGGCTCGATTTCCCAATGGGCGAACGCGCTAGG
GTAGCTGCAGCATTTTCGACATCAACCGAATATCAGCCAGGTCTCAAACA
TAGACGGCGTACGTGTGTTTTGACGGGGCGGGCGTTGGTGTGTCCCTGTG
TATGCTGGAGGTTGTTCACGTGCTGCTGCTAATGGTGAAGGGTTGGGTCA
ACATTCCGTAACACCTTCGTTGTGCAAAGAAAAGAGGAACACGAGTTCGT
CACGGTTGTTGTCGGTTGCGCGGAGCAGGGCGGACTTGCACTTCGGGTGT
CAAAAATAAATAAACATAAATAATTTAATTAAAAGAAGTTTGGCAAGAAA
GACATTCGGAAACGTGGTTCCATGTGTCTTGGTTCTTTTGCGAGAGTTTC
TTTCGTCTGTCCTTCAGGAATATCTTGGAGGTTCACGGGGATTCCGACAG
GTGCACGAGACCATGTGCGTTTAATTCGTTTGGCATTCGAATTAAGCTTA
ATTATCCCACCTCACATCAACACAAGAAAAACGGGCACGAATATTCTGTC
CTGGTAATTGTATGCAGAGCT

protein sequence of EsuBft1114_10a-0001

>EsuBft1114_10 ID=EsuBft1114_10|Name=EsuBft1114_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=168bp
MDDMDDVAAFWQHHAERFCPQGNPLNVWEELLLIATQTPERFREALQAAA
VAVGARYCNHDTPPGPLPDISKLPERQAAAQQHAGLCGKYHAEHIANIDV
TMVEERAAGAEITTKRMRNQACYDAGMALNARGRGVQLRRQECFTQACRA
VWPDDQPLPAAVLAALSM

mRNA from alignment at Scaffold_290:2427..4211-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1114_10a-0001 ID=EsuBft1114_10a-0001|Name=EsuBft1114_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1785bp|location=Sequence derived from alignment at Scaffold_290:2427..4211- (Ectocarpus subulatus male Bft15b)
CGCAGTTTACGTCGACAATAATGGACGACATGGACGACGTAGCCGCGTTC
TGGCAGCACCATGCTGAGCGTTTCTGTCCACAGGGCAACCCGCTCAACGT
TTGGGAAGAATTACTGCTCATAGCAACACAAACGCCTGAGCGTTTCCGCG
AAGCTTTGCAAGCAGCCGCAGTCGCTGTTGGTGCCCGGTACTGCAACCAC
GATACTCCGCCGGGTCCGCTCCCTGATATCAGCAAACTGCCGGAGAGGCA
GGCCGCCGCACAGCAACACGCTGGATTATGCGGAAAGTACCACGCGGAAC
ACATCGCCAACATCGACGTCACCATGGTAGAAGAGAGGGCAGCAGGAGCT
GAGATCACAACGAAAAGAATGAGGAATCAGGTGTGTGTGTATTGGACTGC
TGTATTGTGGGGTATGCACTGCTGTGTATGTGTGCCAGGAAATGTGTACG
AGGCCAGAGTGGTGGTGGTGGGTGTGCCACACGAACGATATCTATCTGTC
TGTGGCCTGCTGACACTTTAGGCCGGAAAGAGAGGCACGTTGTGTTGTTG
TGCTGAATACTTCATTCACATATACGACCTACAGCTGTTGACACAACTTC
GACACCGCGAGATAATCGGTGTTTTTAGCCTTTGACATGGTTGGTGTCCT
GCTGCTGTCAGCAGGCAAAGAAGCTTGTGATGAAAGCTTAATTGTGCGGG
AAGTACGCCGACGGGCGTGTTGGCGGATCAGTTACATGTGCATACATAGT
TCTGGCGGCGGGCATGTTTCGTCTGGGTCGACATGTTCACAGCCTGTCAT
CAAACGCGCTACAGCAGTAGCAAAATTGCTGGTGCTTGTTCTACTAAATA
TTAGTCGGACAACATCAAACACCTCGCGGCGTGACCTGATCTTCCGAGGG
ACGAATTCTCGTAGTCGAGAATCTATGTGGACAGGCATGAACAGCACCAC
CTACCATGTTGTCGCGTTCACACCGATGCGCTTGACGCGTGCAGGCCTGC
TACGACGCCGGGATGGCGCTCAACGCGCGAGGCCGTGGGGTTCAGCTGAG
GAGGCAGGAGTGCTTCACCCAGGCCTGCCGCGCGGTCTGGCCTGACGACC
AGCCGCTGCCCGCAGCTGTACTTGCCGCTCTTTCGATGTAGTGAGTGACG
CACGTGCCATCGGCTACGCACGCGGGGCAAGGTAGCTATGTTGTCTGTTT
TGATGAAGCTGAGACCGGCGGGCGAATGTGCTGGCTCGATTTCCCAATGG
GCGAACGCGCTAGGGTAGCTGCAGCATTTTCGACATCAACCGAATATCAG
CCAGGTCTCAAACATAGACGGCGTACGTGTGTTTTGACGGGGCGGGCGTT
GGTGTGTCCCTGTGTATGCTGGAGGTTGTTCACGTGCTGCTGCTAATGGT
GAAGGGTTGGGTCAACATTCCGTAACACCTTCGTTGTGCAAAGAAAAGAG
GAACACGAGTTCGTCACGGTTGTTGTCGGTTGCGCGGAGCAGGGCGGACT
TGCACTTCGGGTGTCAAAAATAAATAAACATAAATAATTTAATTAAAAGA
AGTTTGGCAAGAAAGACATTCGGAAACGTGGTTCCATGTGTCTTGGTTCT
TTTGCGAGAGTTTCTTTCGTCTGTCCTTCAGGAATATCTTGGAGGTTCAC
GGGGATTCCGACAGGTGCACGAGACCATGTGCGTTTAATTCGTTTGGCAT
TCGAATTAAGCTTAATTATCCCACCTCACATCAACACAAGAAAAACGGGC
ACGAATATTCTGTCCTGGTAATTGTATGCAGAGCT

Coding sequence (CDS) from alignment at Scaffold_290:2427..4211-

>EsuBft1114_10a-0001 ID=EsuBft1114_10a-0001|Name=EsuBft1114_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=507bp|location=Sequence derived from alignment at Scaffold_290:2427..4211- (Ectocarpus subulatus male Bft15b)
ATGGACGACATGGACGACGTAGCCGCGTTCTGGCAGCACCATGCTGAGCG
TTTCTGTCCACAGGGCAACCCGCTCAACGTTTGGGAAGAATTACTGCTCA
TAGCAACACAAACGCCTGAGCGTTTCCGCGAAGCTTTGCAAGCAGCCGCA
GTCGCTGTTGGTGCCCGGTACTGCAACCACGATACTCCGCCGGGTCCGCT
CCCTGATATCAGCAAACTGCCGGAGAGGCAGGCCGCCGCACAGCAACACG
CTGGATTATGCGGAAAGTACCACGCGGAACACATCGCCAACATCGACGTC
ACCATGGTAGAAGAGAGGGCAGCAGGAGCTGAGATCACAACGAAAAGAAT
GAGGAATCAGGCCTGCTACGACGCCGGGATGGCGCTCAACGCGCGAGGCC
GTGGGGTTCAGCTGAGGAGGCAGGAGTGCTTCACCCAGGCCTGCCGCGCG
GTCTGGCCTGACGACCAGCCGCTGCCCGCAGCTGTACTTGCCGCTCTTTC
GATGTAG