EsuBft1113_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1113_8a-0001
Unique Name	EsuBft1113_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_463	contig	Scaffold_463:98527..100947 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1113_8
Protein domains	IPR013762
Protein domains	IPR011010
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	242
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0003677
GO	0015074
GO	0006310

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1113_8a	EsuBft1113_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_463 98527..100947 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1113_8a-0001-exon	EsuBft1113_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_463 98527..100947 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1113_8a-0001-cds	EsuBft1113_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_463 98527..100947 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1113_8a-0001	EsuBft1113_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_463 98527..100947 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_463:98527..100947-
coding sequence from alignment at Scaffold_463:98527..100947-

spliced messenger RNA

>EsuBft1113_8a-0001 ID=EsuBft1113_8a-0001|Name=EsuBft1113_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2421bp|location=Sequence derived from alignment at Scaffold_463:98527..100947- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCACCACCACCAGTAATAAAACCACCACCGTCCAAGCGCGCGAA
GAGGAGCGGGGCGGAACGTGTCACGACGCTCGACAACCCGGCCTTCGATG
CGGACGACGTGGCCGCGGCGAAATCGCACGCCAAGATGTCTTTCAGGTGC
CCGGTCACCATCGACAGTGTCTTCGCGCCGCCGGCGCCCGACCAGGTCTG
CACCTTCTACGAATCCAGGAACCACGGCAGCAAGCCATGGGGTCACCTCT
CCGAACCTGAGCAACGGGAATGGGCCGAGTCGTGTCACGACAACAAGACG
CTGATGGGGTTCATCGTGTACGCGACGCTCTTTCCGAAGCTGCTGCGCAA
CAGGATCAAGCTCAACGCCGCGACGTACCACTGGGCACACCTGGACTCCT
CATCGGCCAAGGGGAGGCTCAAGCTCGAGCAGCGACGCGGCGCGGTGAGC
AGGCTCAGGAGGGTCGGGTTCGCGCGCTCGCTGTTCCGCGGGCTCCCGCA
CAGGATCGACCCGGTGGCCGACACCAGCATCCTGGTGTTCATGAACATGA
GCGTGGAGGAAGAGGACGAGAGGTTCCGCTTTTTCACTAATCGAGAGTTC
TCCATGATCTACTCTGAGCGAGGAGAGGTCGGCAGCTCGTCCGTTTACTC
GTCCTGCTCCACGGCGCTCTCTCTTCTCTGGTTCGCAACGACCGTTCTAG
CCAGGCCCTGCTGCCTCGAATCGATCATCCTCCCGATAAACGTCAGAGAG
AGGAGGAGGATGGAACAGAGGTTCGGGTGCCCGTCTCACTTCTTCGACGG
ACCCATCCGGAGCTTCCAGACCACATGGGGAGGCGTGTTCGCCGCCATCG
GCACGCCTCATCGGAGCATCGACTACACCGTCATCGAATTCGCCACGTCG
GAAAAATACGTGGAGGGCGTGCACGTCTCCGACGCGTACGCGGCGTTCCG
CGCAACGATGACCGCACCGGGAGACTGCGCGAGCATCGCGGCGTTGGTAC
AGTCTTACCGCAGGTCCGCGAAACACGGGGTCGAGTCCGGGGCCGTCGTC
GGCGCACTGGACGTCATCAGGGACAGGCCGGCCGGAGCCATCGGGAAAAT
TGACGGGGGTGTCCTCGGCACCATCTTGTCGACCTACGGAGAAACTGCGT
GCGCAAATGTCCAGGCGGAGTGCGTCAAGCTTGACGGAGGGGCGTCGCTG
TTCGACGACAGCGTCCGAAGCAAGCTCGGCGAAATCATGACCCATTTCGA
CAACCAGCTGTGGAGGGCGCGCAAGAAAGACAAGGTGGAGAGGCTGATTG
TGGCGAACATGGATCCCGCCGGGATCAACAAGAAGGTCGAGGGGGGAAAG
ATGCTCGACCCCACCAACCCGGACTCCGTGGCCAAAATGATGGGTATGCT
CAAGTCCCTCTCCGGCCAGGTGTGGAAACCTCTCAGGAGCTTGATCGGGA
AAGCGCTGGGCGCAAGCCTGGAATCCCCCGGACCCTTCCTGCAAATTTCA
GAGAGCGAAGCCCAAACCCTTGCGCAGTTTGTTCGGGCTGCAAGCGTAAC
CTATGCGGACATCGCCAACCTCTGCACGCTGTTGCTGCTGAGCTTCTCGT
TCCAGCGCTCACAGGTGCTCCGAGAGGCGACCGTCGACGAATTCGTGCTC
GTGCCAGACGCGACGCGCTTCAAATTCTCGTTCAAGAACAGGAGGTTCAA
GACCGCCGCATCCTCCGGAGGAAACGTCGCGGCGCCACCGGTCAGCCACT
TCGTGCTCACCCCGGATCAAAGCATGATAGTCAAATTCATCGCCACCGCG
GGACACGGGCTCTGCTGCCACGGCAAAGCGACGAAGCCCGACAACGGGAG
GCGGCGGCTGTTTGTCAATGCCAGGGGCCAGGGCTGGAACCAGAAAGACA
TCTCGTCGCGATTCAAAAAAATTGGCATCGAGTGGTTGAGCATTGAGAAC
TTCGGCCCGCACGTGTGCAGGAGCTTTTGGGCCTCGAGCGCCCTGAACTC
CGGCCAGGTGAATTCCAATAACCTCGAAGACTTCAGCAGCTTTCTCCAAG
TTTCGAGCGCAACCCTCAGGAACAGCTACATGGCTGCGACGGCGAACACC
GCAGCTCACACCTTGGGGAACGAAGTTCTCGGAGCGGTCTCAAACATGGC
GTGCACCGGAGAGACGACGGAGCGCGCGAACCGTCCGTACGGCAAGAAGC
TGTGCGCCAAGAGGAACGAATTCTCAGCAGATATCCAAGCGTACCTGGCG
AAGCACCGCGGCACCACCACCAGCAGAAAGGTGTTCCGAGCGCTGATTCG
AAAGCGGGCCGCTTCTCAGCTCCTTGAGGACGAGAAGTGGTTCAGGTGGG
AGAACACGTTTTTCGGAGAAGGAGACGAGAGGTTGTTTCAGCGGTTCGTT
GACAAGGGGAAGGCGGATTGA

protein sequence of EsuBft1113_8a-0001

>EsuBft1113_8 ID=EsuBft1113_8|Name=EsuBft1113_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=806bp
MSAPPPVIKPPPSKRAKRSGAERVTTLDNPAFDADDVAAAKSHAKMSFRC
PVTIDSVFAPPAPDQVCTFYESRNHGSKPWGHLSEPEQREWAESCHDNKT
LMGFIVYATLFPKLLRNRIKLNAATYHWAHLDSSSAKGRLKLEQRRGAVS
RLRRVGFARSLFRGLPHRIDPVADTSILVFMNMSVEEEDERFRFFTNREF
SMIYSERGEVGSSSVYSSCSTALSLLWFATTVLARPCCLESIILPINVRE
RRRMEQRFGCPSHFFDGPIRSFQTTWGGVFAAIGTPHRSIDYTVIEFATS
EKYVEGVHVSDAYAAFRATMTAPGDCASIAALVQSYRRSAKHGVESGAVV
GALDVIRDRPAGAIGKIDGGVLGTILSTYGETACANVQAECVKLDGGASL
FDDSVRSKLGEIMTHFDNQLWRARKKDKVERLIVANMDPAGINKKVEGGK
MLDPTNPDSVAKMMGMLKSLSGQVWKPLRSLIGKALGASLESPGPFLQIS
ESEAQTLAQFVRAASVTYADIANLCTLLLLSFSFQRSQVLREATVDEFVL
VPDATRFKFSFKNRRFKTAASSGGNVAAPPVSHFVLTPDQSMIVKFIATA
GHGLCCHGKATKPDNGRRRLFVNARGQGWNQKDISSRFKKIGIEWLSIEN
FGPHVCRSFWASSALNSGQVNSNNLEDFSSFLQVSSATLRNSYMAATANT
AAHTLGNEVLGAVSNMACTGETTERANRPYGKKLCAKRNEFSADIQAYLA
KHRGTTTSRKVFRALIRKRAASQLLEDEKWFRWENTFFGEGDERLFQRFV
DKGKAD

mRNA from alignment at Scaffold_463:98527..100947-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1113_8a-0001 ID=EsuBft1113_8a-0001|Name=EsuBft1113_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2421bp|location=Sequence derived from alignment at Scaffold_463:98527..100947- (Ectocarpus subulatus male Bft15b)
ATGTCTGCACCACCACCAGTAATAAAACCACCACCGTCCAAGCGCGCGAA
GAGGAGCGGGGCGGAACGTGTCACGACGCTCGACAACCCGGCCTTCGATG
CGGACGACGTGGCCGCGGCGAAATCGCACGCCAAGATGTCTTTCAGGTGC
CCGGTCACCATCGACAGTGTCTTCGCGCCGCCGGCGCCCGACCAGGTCTG
CACCTTCTACGAATCCAGGAACCACGGCAGCAAGCCATGGGGTCACCTCT
CCGAACCTGAGCAACGGGAATGGGCCGAGTCGTGTCACGACAACAAGACG
CTGATGGGGTTCATCGTGTACGCGACGCTCTTTCCGAAGCTGCTGCGCAA
CAGGATCAAGCTCAACGCCGCGACGTACCACTGGGCACACCTGGACTCCT
CATCGGCCAAGGGGAGGCTCAAGCTCGAGCAGCGACGCGGCGCGGTGAGC
AGGCTCAGGAGGGTCGGGTTCGCGCGCTCGCTGTTCCGCGGGCTCCCGCA
CAGGATCGACCCGGTGGCCGACACCAGCATCCTGGTGTTCATGAACATGA
GCGTGGAGGAAGAGGACGAGAGGTTCCGCTTTTTCACTAATCGAGAGTTC
TCCATGATCTACTCTGAGCGAGGAGAGGTCGGCAGCTCGTCCGTTTACTC
GTCCTGCTCCACGGCGCTCTCTCTTCTCTGGTTCGCAACGACCGTTCTAG
CCAGGCCCTGCTGCCTCGAATCGATCATCCTCCCGATAAACGTCAGAGAG
AGGAGGAGGATGGAACAGAGGTTCGGGTGCCCGTCTCACTTCTTCGACGG
ACCCATCCGGAGCTTCCAGACCACATGGGGAGGCGTGTTCGCCGCCATCG
GCACGCCTCATCGGAGCATCGACTACACCGTCATCGAATTCGCCACGTCG
GAAAAATACGTGGAGGGCGTGCACGTCTCCGACGCGTACGCGGCGTTCCG
CGCAACGATGACCGCACCGGGAGACTGCGCGAGCATCGCGGCGTTGGTAC
AGTCTTACCGCAGGTCCGCGAAACACGGGGTCGAGTCCGGGGCCGTCGTC
GGCGCACTGGACGTCATCAGGGACAGGCCGGCCGGAGCCATCGGGAAAAT
TGACGGGGGTGTCCTCGGCACCATCTTGTCGACCTACGGAGAAACTGCGT
GCGCAAATGTCCAGGCGGAGTGCGTCAAGCTTGACGGAGGGGCGTCGCTG
TTCGACGACAGCGTCCGAAGCAAGCTCGGCGAAATCATGACCCATTTCGA
CAACCAGCTGTGGAGGGCGCGCAAGAAAGACAAGGTGGAGAGGCTGATTG
TGGCGAACATGGATCCCGCCGGGATCAACAAGAAGGTCGAGGGGGGAAAG
ATGCTCGACCCCACCAACCCGGACTCCGTGGCCAAAATGATGGGTATGCT
CAAGTCCCTCTCCGGCCAGGTGTGGAAACCTCTCAGGAGCTTGATCGGGA
AAGCGCTGGGCGCAAGCCTGGAATCCCCCGGACCCTTCCTGCAAATTTCA
GAGAGCGAAGCCCAAACCCTTGCGCAGTTTGTTCGGGCTGCAAGCGTAAC
CTATGCGGACATCGCCAACCTCTGCACGCTGTTGCTGCTGAGCTTCTCGT
TCCAGCGCTCACAGGTGCTCCGAGAGGCGACCGTCGACGAATTCGTGCTC
GTGCCAGACGCGACGCGCTTCAAATTCTCGTTCAAGAACAGGAGGTTCAA
GACCGCCGCATCCTCCGGAGGAAACGTCGCGGCGCCACCGGTCAGCCACT
TCGTGCTCACCCCGGATCAAAGCATGATAGTCAAATTCATCGCCACCGCG
GGACACGGGCTCTGCTGCCACGGCAAAGCGACGAAGCCCGACAACGGGAG
GCGGCGGCTGTTTGTCAATGCCAGGGGCCAGGGCTGGAACCAGAAAGACA
TCTCGTCGCGATTCAAAAAAATTGGCATCGAGTGGTTGAGCATTGAGAAC
TTCGGCCCGCACGTGTGCAGGAGCTTTTGGGCCTCGAGCGCCCTGAACTC
CGGCCAGGTGAATTCCAATAACCTCGAAGACTTCAGCAGCTTTCTCCAAG
TTTCGAGCGCAACCCTCAGGAACAGCTACATGGCTGCGACGGCGAACACC
GCAGCTCACACCTTGGGGAACGAAGTTCTCGGAGCGGTCTCAAACATGGC
GTGCACCGGAGAGACGACGGAGCGCGCGAACCGTCCGTACGGCAAGAAGC
TGTGCGCCAAGAGGAACGAATTCTCAGCAGATATCCAAGCGTACCTGGCG
AAGCACCGCGGCACCACCACCAGCAGAAAGGTGTTCCGAGCGCTGATTCG
AAAGCGGGCCGCTTCTCAGCTCCTTGAGGACGAGAAGTGGTTCAGGTGGG
AGAACACGTTTTTCGGAGAAGGAGACGAGAGGTTGTTTCAGCGGTTCGTT
GACAAGGGGAAGGCGGATTGA

Coding sequence (CDS) from alignment at Scaffold_463:98527..100947-

>EsuBft1113_8a-0001 ID=EsuBft1113_8a-0001|Name=EsuBft1113_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2421bp|location=Sequence derived from alignment at Scaffold_463:98527..100947- (Ectocarpus subulatus male Bft15b)
ATGTCTGCACCACCACCAGTAATAAAACCACCACCGTCCAAGCGCGCGAA
GAGGAGCGGGGCGGAACGTGTCACGACGCTCGACAACCCGGCCTTCGATG
CGGACGACGTGGCCGCGGCGAAATCGCACGCCAAGATGTCTTTCAGGTGC
CCGGTCACCATCGACAGTGTCTTCGCGCCGCCGGCGCCCGACCAGGTCTG
CACCTTCTACGAATCCAGGAACCACGGCAGCAAGCCATGGGGTCACCTCT
CCGAACCTGAGCAACGGGAATGGGCCGAGTCGTGTCACGACAACAAGACG
CTGATGGGGTTCATCGTGTACGCGACGCTCTTTCCGAAGCTGCTGCGCAA
CAGGATCAAGCTCAACGCCGCGACGTACCACTGGGCACACCTGGACTCCT
CATCGGCCAAGGGGAGGCTCAAGCTCGAGCAGCGACGCGGCGCGGTGAGC
AGGCTCAGGAGGGTCGGGTTCGCGCGCTCGCTGTTCCGCGGGCTCCCGCA
CAGGATCGACCCGGTGGCCGACACCAGCATCCTGGTGTTCATGAACATGA
GCGTGGAGGAAGAGGACGAGAGGTTCCGCTTTTTCACTAATCGAGAGTTC
TCCATGATCTACTCTGAGCGAGGAGAGGTCGGCAGCTCGTCCGTTTACTC
GTCCTGCTCCACGGCGCTCTCTCTTCTCTGGTTCGCAACGACCGTTCTAG
CCAGGCCCTGCTGCCTCGAATCGATCATCCTCCCGATAAACGTCAGAGAG
AGGAGGAGGATGGAACAGAGGTTCGGGTGCCCGTCTCACTTCTTCGACGG
ACCCATCCGGAGCTTCCAGACCACATGGGGAGGCGTGTTCGCCGCCATCG
GCACGCCTCATCGGAGCATCGACTACACCGTCATCGAATTCGCCACGTCG
GAAAAATACGTGGAGGGCGTGCACGTCTCCGACGCGTACGCGGCGTTCCG
CGCAACGATGACCGCACCGGGAGACTGCGCGAGCATCGCGGCGTTGGTAC
AGTCTTACCGCAGGTCCGCGAAACACGGGGTCGAGTCCGGGGCCGTCGTC
GGCGCACTGGACGTCATCAGGGACAGGCCGGCCGGAGCCATCGGGAAAAT
TGACGGGGGTGTCCTCGGCACCATCTTGTCGACCTACGGAGAAACTGCGT
GCGCAAATGTCCAGGCGGAGTGCGTCAAGCTTGACGGAGGGGCGTCGCTG
TTCGACGACAGCGTCCGAAGCAAGCTCGGCGAAATCATGACCCATTTCGA
CAACCAGCTGTGGAGGGCGCGCAAGAAAGACAAGGTGGAGAGGCTGATTG
TGGCGAACATGGATCCCGCCGGGATCAACAAGAAGGTCGAGGGGGGAAAG
ATGCTCGACCCCACCAACCCGGACTCCGTGGCCAAAATGATGGGTATGCT
CAAGTCCCTCTCCGGCCAGGTGTGGAAACCTCTCAGGAGCTTGATCGGGA
AAGCGCTGGGCGCAAGCCTGGAATCCCCCGGACCCTTCCTGCAAATTTCA
GAGAGCGAAGCCCAAACCCTTGCGCAGTTTGTTCGGGCTGCAAGCGTAAC
CTATGCGGACATCGCCAACCTCTGCACGCTGTTGCTGCTGAGCTTCTCGT
TCCAGCGCTCACAGGTGCTCCGAGAGGCGACCGTCGACGAATTCGTGCTC
GTGCCAGACGCGACGCGCTTCAAATTCTCGTTCAAGAACAGGAGGTTCAA
GACCGCCGCATCCTCCGGAGGAAACGTCGCGGCGCCACCGGTCAGCCACT
TCGTGCTCACCCCGGATCAAAGCATGATAGTCAAATTCATCGCCACCGCG
GGACACGGGCTCTGCTGCCACGGCAAAGCGACGAAGCCCGACAACGGGAG
GCGGCGGCTGTTTGTCAATGCCAGGGGCCAGGGCTGGAACCAGAAAGACA
TCTCGTCGCGATTCAAAAAAATTGGCATCGAGTGGTTGAGCATTGAGAAC
TTCGGCCCGCACGTGTGCAGGAGCTTTTGGGCCTCGAGCGCCCTGAACTC
CGGCCAGGTGAATTCCAATAACCTCGAAGACTTCAGCAGCTTTCTCCAAG
TTTCGAGCGCAACCCTCAGGAACAGCTACATGGCTGCGACGGCGAACACC
GCAGCTCACACCTTGGGGAACGAAGTTCTCGGAGCGGTCTCAAACATGGC
GTGCACCGGAGAGACGACGGAGCGCGCGAACCGTCCGTACGGCAAGAAGC
TGTGCGCCAAGAGGAACGAATTCTCAGCAGATATCCAAGCGTACCTGGCG
AAGCACCGCGGCACCACCACCAGCAGAAAGGTGTTCCGAGCGCTGATTCG
AAAGCGGGCCGCTTCTCAGCTCCTTGAGGACGAGAAGTGGTTCAGGTGGG
AGAACACGTTTTTCGGAGAAGGAGACGAGAGGTTGTTTCAGCGGTTCGTT
GACAAGGGGAAGGCGGATTGA