EsuBft1113_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1113_7a-0001
Unique Name	EsuBft1113_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_463	contig	Scaffold_463:111923..116323 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1113_7
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	226
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1113_7a	EsuBft1113_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_463 111923..116323 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1113_7a-0001-exon	agat-exon-84744	Ectocarpus subulatus male Bft15b	exon	Scaffold_463 111923..113143 -
EsuBft1113_7a-0001-exon	EsuBft1113_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_463 114898..114945 -
EsuBft1113_7a-0001-exon	agat-exon-84745	Ectocarpus subulatus male Bft15b	exon	Scaffold_463 115327..116323 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1113_7a-0001-exon	agat-three_prime_utr-1077	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_463 111923..112484 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1113_7a-0001-cds	EsuBft1113_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_463 112485..113143 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1113_7a-0001	EsuBft1113_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_463 112485..116323 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_463:111923..116323-
coding sequence from alignment at Scaffold_463:111923..116323-

spliced messenger RNA

>EsuBft1113_7a-0001 ID=EsuBft1113_7a-0001|Name=EsuBft1113_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2266bp|location=Sequence derived from alignment at Scaffold_463:111923..116323- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAAGACGTCGTCGTGGAGGGGTGTGTGGAAGGCCCTCGTCAACCC
TGCAGACGGTTCATGCGGGCTCTACAGCATGCTGCAGCTTTTGTTGATGA
ACAAGCGCAGCATGTCTGCGTCGGGCGCCGAGTGGGCAATCCGTCGTGCC
GCTGGTACGCCGGAAATGCGTGAGCTGCTGATGTTGTGCCGCCGGAGCAT
CGTGAACTACGTTCGCGCCTCCCCAGACTTCGAGCTATTTTTCGACGACG
AGGGGCGTGCCAGCACGGACATCTTCACCACGGCCGAACTAATATCTCTG
GTCGACTGGGAAGGGGCCATCCTCAAAGAGGGGAGCTACATCGACGGCAT
CGCCGTCTTGGTGCTGGGTCGCATTTTCGGGATACCAAGTGTGAGGATCG
TCCACGAGGTCTCCTGTGGCGGTTTGGCGGATCATTTTTCCCCCGTTGAT
CCGGTGAAGGCGACCGGCCAGCCCACTGTTCTACACTCCGGTGGGACACA
CTTCGAGGCCGTGGTCCCAATTGCTTACGATGCAGACACCGAGGTTTCCG
CTGAAAACGACCTGGGTTCGGCCATGGAGTTTTGCAGGCAGGCGCTCGAC
CGTCACGCCGACGATCCCGTTGACGACGGCGCGTTCGTGAATGCCGTGAT
CTCATTCGTCCGCCACATCCCTCGCAGCACCGGGACCAAAAAAAGGGCTT
TGTCGACTCGCGGCATTCACAAGTTGACCCGCGGACGCAGGCCGCTTACG
CGCGGTCGTCTTTCTCGCTTTCGCGACTCATGCCGTGGGCTACGAAGCAT
AAGGGGAGGTGAAGATTTTGACGTCTCAGGGGCTCCGGTGATCGAGGGAG
CTGCGACTCAGGATGCATCGCAAGGAAAAAGGCCTGCTTCTCCCGTTACG
GGTGTCTCTTCTACCCCTCCTGTTGGTGCTCCTCCTCGCGACCCCTCCTC
TTCTTCGCCCATCTTCCTTGGAATTGAGACCCTTGAGGGCGGCCCAGGCT
CGGCTACTACCGCCATCCAACCTTCGGCGCCTAGGGATGTCCAAGGCCCT
TCATTGGAGAGCGCTCTGACTACGACAGTCCAACTCGTCGGCGTTAACGC
GAAGGCTATTGAGTGCCACAGGATCGACATTGAGAGCAACAGGAGCGGAA
TTGTCAGAAACGCAATCGCAGTGGAGGAGACCAAGAAAGATGCGGAAGAG
ATCAGAAAGGAAGTGCGAGAGGCCATGAGAGAAGTGCGAGAGATCGCCGA
AGGACAGCGAGAAAACAATCCAAGGACTCAAAGCATGCAAAAGATGTACG
TCTCCGACAAGTTCGTTGGACAACTAGGGGAAACGTTCATGCCTTTTTTC
CATCTTTTGTTCGACCCGAGCACGGGAAACAATGGATGGTGTCCTGTCAT
ATTTAAGGATCATAAGAACGACACGCTTGAACTTGTCGTGATTTCGGTAC
AATGTTGCCAGTGCTTTTACGGCGAAGAAAGGCGTAAGAGCGAACAGGAT
AAGCAGTCTTGTCAGTCGTGGTTGCTTGGTCCAACGTTCGAGCAGGCAAC
AGGTTTTACTTGTGCAGATGAGCTCAAAGCTTATCAGCTTTCGGGGTTTA
AATTCCTCGGCGCCGGCCCAAGGATGAACAACAACCGATCCGATAACAAA
AAGAGGTTCATCATTTGTTGGGCTAATTGGTTTAAAAATGTATTACTAGC
TTAGATATCTACCGCATTTCCCAAACGTCCACGTGAACGTAATTTCAACG
TTGGTGGTAAACAGCCGAACTACAAAGCCCTAGGCACGGATTTTGGTTTT
AGGAGTGTTAGTAGGACCATGGACAAGCGTCATCTCAACGACTTTTCAAC
CGGGCCGATTGTCCAACTTGGCGGAGCAAGTATTCCCGAGCACGAGAAGC
TCAAGCTTCCCGTGCTAGGCGAGCCCTGGGTCAAAGAGTGGTATACGCCG
TTCATCAGGAGGTTTTTTGGTATACCGAGACATCTTCTAGGCAAGAAACA
TGTGGTAGGCGGGGTAGTGAGGGCGGATTCGGTCTCAGTGACGTCGCACT
GTATAGGCGCTTCAGACTACTGGAGGCGTCAGGACCATCAGGCGCGAAAG
AGGTCCAAAAGAAACGAAGCTCGGCTATCTGCTAGTAGAAAGAATGGAAG
ATTCTCTGGTTCAGATTTATGAGATACGTAAGCTTTTGTATCGCTTGTCT
AAGAGGGAGGGTTACGTGCCTGCCGCTGTTTTTTAGTTCTTAAAAAACTA
CTTTGCAGCGGAAATG

protein sequence of EsuBft1113_7a-0001

>EsuBft1113_7 ID=EsuBft1113_7|Name=EsuBft1113_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=567bp
MVKTSSWRGVWKALVNPADGSCGLYSMLQLLLMNKRSMSASGAEWAIRRA
AGTPEMRELLMLCRRSIVNYVRASPDFELFFDDEGRASTDIFTTAELISL
VDWEGAILKEGSYIDGIAVLVLGRIFGIPSVRIVHEVSCGGLADHFSPVD
PVKATGQPTVLHSGGTHFEAVVPIAYDADTEVSAENDLGSAMEFCRQALD
RHADDPVDDGAFVNAVISFVRHIPRSTGTKKRALSTRGIHKLTRGRRPLT
RGRLSRFRDSCRGLRSIRGGEDFDVSGAPVIEGAATQDASQGKRPASPVT
GVSSTPPVGAPPRDPSSSSPIFLGIETLEGGPGSATTAIQPSAPRDVQGP
SLESALTTTVQLVGVNAKAIECHRIDIESNRSGIVRNAIAVEETKKDAEE
IRKEVREAMREVREIAEGQRENNPRTQSMQKMYVSDKFVGQLGETFMPFF
HLLFDPSTGNNGWCPVIFKDHKNDTLELVVISVQCCQCFYGEERRKSEQD
KQSCQSWLLGPTFEQATGFTCADELKAYQLSGFKFLGAGPRMNNNRSDNK
KRFIICWANWFKNVLLA

mRNA from alignment at Scaffold_463:111923..116323-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1113_7a-0001 ID=EsuBft1113_7a-0001|Name=EsuBft1113_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4401bp|location=Sequence derived from alignment at Scaffold_463:111923..116323- (Ectocarpus subulatus male Bft15b)
ATGGTGAAGACGTCGTCGTGGAGGGGTGTGTGGAAGGCCCTCGTCAACCC
TGCAGACGGTTCATGCGGGCTCTACAGCATGCTGCAGCTTTTGTTGATGA
ACAAGCGCAGCATGTCTGCGTCGGGCGCCGAGTGGGCAATCCGTCGTGCC
GCTGGTACGCCGGAAATGCGTGAGCTGCTGATGTTGTGCCGCCGGAGCAT
CGTGAACTACGTTCGCGCCTCCCCAGACTTCGAGCTATTTTTCGACGACG
AGGGGCGTGCCAGCACGGACATCTTCACCACGGCCGAACTAATATCTCTG
GTCGACTGGGAAGGGGCCATCCTCAAAGAGGGGAGCTACATCGACGGCAT
CGCCGTCTTGGTGCTGGGTCGCATTTTCGGGATACCAAGTGTGAGGATCG
TCCACGAGGTCTCCTGTGGCGGTTTGGCGGATCATTTTTCCCCCGTTGAT
CCGGTGAAGGCGACCGGCCAGCCCACTGTTCTACACTCCGGTGGGACACA
CTTCGAGGCCGTGGTCCCAATTGCTTACGATGCAGACACCGAGGTTTCCG
CTGAAAACGACCTGGGTTCGGCCATGGAGTTTTGCAGGCAGGCGCTCGAC
CGTCACGCCGACGATCCCGTTGACGACGGCGCGTTCGTGAATGCCGTGAT
CTCATTCGTCCGCCACATCCCTCGCAGCACCGGGACCAAAAAAAGGGCTT
TGTCGACTCGCGGCATTCACAAGTTGACCCGCGGACGCAGGCCGCTTACG
CGCGGTCGTCTTTCTCGCTTTCGCGACTCATGCCGTGGGCTACGAAGCAT
AAGGGGAGGTGAAGATTTTGACGTCTCAGGGGCTCCGGTGATCGAGGGAG
CTGCGACTCAGGATGCATCGCAAGGAAAAAGGCCTGCTTCTCCCGTTACG
GGTGTCTCTTCTACCCCTCCTGTTGGTGCTCCTCCTCGCGACCCCTCCTC
TTCTTCGCCCATCTTCCTTGGAATTGAGACCCTTGAGGGCGGCCCAGGTA
TGCTGCTCCCCAATGTGGTATTCCCATTGGCCCGGATGTTGTTCATTTGC
AGATTTTCCGGTTGCGCTTTACTATCTTTATATATATCACTTGACTGGCT
AACTCTCCCGTTCAGAATGTCTGTCTAGTTTCCTTTAGATTAATTGTTGT
CAAGTTGGGGTTTTCATTCTCTCTTGTCGCGCTCCAGCGTTTTCGGTTCC
TGGCTTGCAGTTTACCGAGTTCCACTCGTTTCTGAAACTTTCGCGCTGTC
GTGTTTTTAACGAGGTGGTTGTCGAAGTTTCAAGAAATCTTTCACTGTAT
AACTCCTAGAAAATCACCCGACCACTTACCCAGTGTTGCTCGGGTATTTC
ACCGCCTTGCATTCTCCTACCCCGTCAGGCTCGGCTACTACCGCCATCCA
ACCTTCGGCGCCTAGGGATGTCCAAGGTATGCTCATTGGCTTCCTTTCGC
TTCGGGAAATACGAGCTTCTTGTCCCACCACCGCGTTTCCCTTTGTTTCT
TTTCTTGCGGCAGAGCCTCTGTCAACTCAGCTCGAAGGTTGCACTGGCTT
CCGCTTCAGGCAATACCGGGCCCTCGTCCCGCCTCTCCCGCTTTCTCTTA
TCTCGCGGTAGAGCCTCTGTCAACTCAGCTCGAAGGTTGCACCGGCTTCC
GCTTCAGGCAATACCGGGCCCTTGTCCCGCCTCTCCCGCTCTCTCTTATC
TCGCGGTAGAGCCTCTGTCAACTCAGCTCGAAGGTTGCATTGGTGTGGTA
TTGTCATTTTCTCGGATTAACATAAACTCAGTTCCACTCGTTTGTTGGTC
GATAAAGCATCGTTTTCAGCACGTGCCTCGCAATACACACACCCCACCGG
CTTGTTTTTTGTTTGTCTCTGTCCCGTATTATCCTACGGTTGTGAGCGGG
CCGACCCATAAAAGTGTTGTTGCTTGCGGACTCGAGATGTAGACCTTGCT
TTTGTCACGGACTGTTTCGGAACTCTTTCCTACTCCCACGTCTCGCGCAA
GCGCAGGCGATAAACGGCTTGTAGTGCACCGAGTTCCACTCGTTTGTTGG
TCGATAAAGCATCGTTTTCAGCACGTGCCTCGCAATACACACACCCCACC
GGCTTGTTTTTTGTTTGTCTCTGTCCCGTATTATCCTACGGTTGTGAGCG
GGCCGACCCATAAAAGTGTTGTTGCTTGCGGACTCGAGATGTAGACCTTG
CTTTTGTCACGGACTGTTTCGGAACTCTTTCCTACTCCCACGTCTCGCGC
AAGCGCAGGCGATAAACGGCTTGTAGTGCACCGAGTTCCACTCGTTTGTT
GGTCGATAAAGCATCGTTTTCAGCACGTGCCTCGCAATACACACACCCCA
CCGGCTTGTTTTTTGTTTGTCTCTGTCCCGTATTATCCTACGGTTGTGAG
CGGGCCGACCCATAAAAGTGTTGTTGCTTGCGGACTCGAGATGTAGACCT
TGCTTTTGTCACGGACTGTTTCGGAACTCTTTCCTACTCCCACGTCTCGC
GCAAGCGCAGGCGATAAACGGCTTGTAGTGCACCGAGTTCCACTCGTTTG
TTGGTCGATAAAGCATCGTTTTCAGCACGTGCCTCGCAATACACACACCC
CACCGGCTTGTTTTTTGTTTGTCTCTGTCCCGTATTATCCTACGGTTGTG
AGCGGGCCGACCCATAAAAGTGTTGTTGCTTGCGGACTCGAGATGTAGAC
CTTGCTTTTGTCACGGACTGTTTCGGAACTCTTTCCTACTCCCACGTCTC
GCGCAAGCGCAGGCGATAAACGGCTTGTAGTGCACCGAGTTCCACTCGTT
TGTTGGTCGATAAAGCATCGTTTTCAGCACGTGCCTCGCAATACACACAC
CCCACCGGCTGGTTTTTTGTTTGTCTCTGTCCCGTATTATCCTACGGTTG
TTCCTTTTGTAGATTATTGCTGTACGCATTTGAACGAGAAAGTGATGCCG
TGAATTTGAACAAGAATGTGAACCTTCGCTGCTTTCTCGCCCTTTGTATC
CGGTGTACCCGAACTCTCGCGCTACACAGACCGCATTTGTCTTACGTGGA
ATTTCCGCTCACCGGTGATGATGCATTTTGATGTTCCCGTGTTTGTGTTT
CGCGAAGCCGAATCGTATACCGAACTGCTTTTAATTATCTGTGCGTGCCA
ATCGTTTCTCAACTTGATTTTAACAAAAAGGCCCTTCATTGGAGAGCGCT
CTGACTACGACAGTCCAACTCGTCGGCGTTAACGCGAAGGCTATTGAGTG
CCACAGGATCGACATTGAGAGCAACAGGAGCGGAATTGTCAGAAACGCAA
TCGCAGTGGAGGAGACCAAGAAAGATGCGGAAGAGATCAGAAAGGAAGTG
CGAGAGGCCATGAGAGAAGTGCGAGAGATCGCCGAAGGACAGCGAGAAAA
CAATCCAAGGACTCAAAGCATGCAAAAGATGTACGTCTCCGACAAGTTCG
TTGGACAACTAGGGGAAACGTTCATGCCTTTTTTCCATCTTTTGTTCGAC
CCGAGCACGGGAAACAATGGATGGTGTCCTGTCATATTTAAGGATCATAA
GAACGACACGCTTGAACTTGTCGTGATTTCGGTACAATGTTGCCAGTGCT
TTTACGGCGAAGAAAGGCGTAAGAGCGAACAGGATAAGCAGTCTTGTCAG
TCGTGGTTGCTTGGTCCAACGTTCGAGCAGGCAACAGGTTTTACTTGTGC
AGATGAGCTCAAAGCTTATCAGCTTTCGGGGTTTAAATTCCTCGGCGCCG
GCCCAAGGATGAACAACAACCGATCCGATAACAAAAAGAGGTTCATCATT
TGTTGGGCTAATTGGTTTAAAAATGTATTACTAGCTTAGATATCTACCGC
ATTTCCCAAACGTCCACGTGAACGTAATTTCAACGTTGGTGGTAAACAGC
CGAACTACAAAGCCCTAGGCACGGATTTTGGTTTTAGGAGTGTTAGTAGG
ACCATGGACAAGCGTCATCTCAACGACTTTTCAACCGGGCCGATTGTCCA
ACTTGGCGGAGCAAGTATTCCCGAGCACGAGAAGCTCAAGCTTCCCGTGC
TAGGCGAGCCCTGGGTCAAAGAGTGGTATACGCCGTTCATCAGGAGGTTT
TTTGGTATACCGAGACATCTTCTAGGCAAGAAACATGTGGTAGGCGGGGT
AGTGAGGGCGGATTCGGTCTCAGTGACGTCGCACTGTATAGGCGCTTCAG
ACTACTGGAGGCGTCAGGACCATCAGGCGCGAAAGAGGTCCAAAAGAAAC
GAAGCTCGGCTATCTGCTAGTAGAAAGAATGGAAGATTCTCTGGTTCAGA
TTTATGAGATACGTAAGCTTTTGTATCGCTTGTCTAAGAGGGAGGGTTAC
GTGCCTGCCGCTGTTTTTTAGTTCTTAAAAAACTACTTTGCAGCGGAAAT
G

Coding sequence (CDS) from alignment at Scaffold_463:111923..116323-

>EsuBft1113_7a-0001 ID=EsuBft1113_7a-0001|Name=EsuBft1113_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1704bp|location=Sequence derived from alignment at Scaffold_463:111923..116323- (Ectocarpus subulatus male Bft15b)
ATGGTGAAGACGTCGTCGTGGAGGGGTGTGTGGAAGGCCCTCGTCAACCC
TGCAGACGGTTCATGCGGGCTCTACAGCATGCTGCAGCTTTTGTTGATGA
ACAAGCGCAGCATGTCTGCGTCGGGCGCCGAGTGGGCAATCCGTCGTGCC
GCTGGTACGCCGGAAATGCGTGAGCTGCTGATGTTGTGCCGCCGGAGCAT
CGTGAACTACGTTCGCGCCTCCCCAGACTTCGAGCTATTTTTCGACGACG
AGGGGCGTGCCAGCACGGACATCTTCACCACGGCCGAACTAATATCTCTG
GTCGACTGGGAAGGGGCCATCCTCAAAGAGGGGAGCTACATCGACGGCAT
CGCCGTCTTGGTGCTGGGTCGCATTTTCGGGATACCAAGTGTGAGGATCG
TCCACGAGGTCTCCTGTGGCGGTTTGGCGGATCATTTTTCCCCCGTTGAT
CCGGTGAAGGCGACCGGCCAGCCCACTGTTCTACACTCCGGTGGGACACA
CTTCGAGGCCGTGGTCCCAATTGCTTACGATGCAGACACCGAGGTTTCCG
CTGAAAACGACCTGGGTTCGGCCATGGAGTTTTGCAGGCAGGCGCTCGAC
CGTCACGCCGACGATCCCGTTGACGACGGCGCGTTCGTGAATGCCGTGAT
CTCATTCGTCCGCCACATCCCTCGCAGCACCGGGACCAAAAAAAGGGCTT
TGTCGACTCGCGGCATTCACAAGTTGACCCGCGGACGCAGGCCGCTTACG
CGCGGTCGTCTTTCTCGCTTTCGCGACTCATGCCGTGGGCTACGAAGCAT
AAGGGGAGGTGAAGATTTTGACGTCTCAGGGGCTCCGGTGATCGAGGGAG
CTGCGACTCAGGATGCATCGCAAGGAAAAAGGCCTGCTTCTCCCGTTACG
GGTGTCTCTTCTACCCCTCCTGTTGGTGCTCCTCCTCGCGACCCCTCCTC
TTCTTCGCCCATCTTCCTTGGAATTGAGACCCTTGAGGGCGGCCCAGGCT
CGGCTACTACCGCCATCCAACCTTCGGCGCCTAGGGATGTCCAAGGCCCT
TCATTGGAGAGCGCTCTGACTACGACAGTCCAACTCGTCGGCGTTAACGC
GAAGGCTATTGAGTGCCACAGGATCGACATTGAGAGCAACAGGAGCGGAA
TTGTCAGAAACGCAATCGCAGTGGAGGAGACCAAGAAAGATGCGGAAGAG
ATCAGAAAGGAAGTGCGAGAGGCCATGAGAGAAGTGCGAGAGATCGCCGA
AGGACAGCGAGAAAACAATCCAAGGACTCAAAGCATGCAAAAGATGTACG
TCTCCGACAAGTTCGTTGGACAACTAGGGGAAACGTTCATGCCTTTTTTC
CATCTTTTGTTCGACCCGAGCACGGGAAACAATGGATGGTGTCCTGTCAT
ATTTAAGGATCATAAGAACGACACGCTTGAACTTGTCGTGATTTCGGTAC
AATGTTGCCAGTGCTTTTACGGCGAAGAAAGGCGTAAGAGCGAACAGGAT
AAGCAGTCTTGTCAGTCGTGGTTGCTTGGTCCAACGTTCGAGCAGGCAAC
AGGTTTTACTTGTGCAGATGAGCTCAAAGCTTATCAGCTTTCGGGGTTTA
AATTCCTCGGCGCCGGCCCAAGGATGAACAACAACCGATCCGATAACAAA
AAGAGGTTCATCATTTGTTGGGCTAATTGGTTTAAAAATGTATTACTAGC
TTAG