EsuBft1113_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1113_4a-0001
Unique NameEsuBft1113_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_463contigScaffold_463:129866..130492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog29176.XP_003883139.1
ProteomeIdEsuBft1113_4
Protein domainsSSF82199
Protein domainsG3DSA
Protein domainsIPR001214
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl5794|Apicomplexa
Length62
Hectar predicted targeting categoryother localisation
Evalue1.67e-05
EggNOG OGs2C3YR@1|root,2S9YS@2759|Eukaryota,3YH8A@5794|Apicomplexa,3YNZ2@5796|Coccidia,3YV45@5809|Sarcocystidae
Date last modified2016-06-14
Date creation2016-06-14
DescriptionSET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1113_4aEsuBft1113_4aEctocarpus subulatus male Bft15bgeneScaffold_463 129866..130492 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1113_4a-0001-exonEsuBft1113_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_463 129866..130492 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1113_4a-0001-cdsEsuBft1113_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_463 129866..130492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1113_4a-0001EsuBft1113_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_463 129866..130492 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1113_4a-0001 ID=EsuBft1113_4a-0001|Name=EsuBft1113_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=627bp|location=Sequence derived from alignment at Scaffold_463:129866..130492- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGTGCGTAAACGTGCGCCGAAGGAATACTCTTTTCGCACTGCGAG
TTGGTCGTGCCCCCTCACTTGTGAGCAATGCCAAGAGGTGAGGGCGAACG
GCATGAGGTGCAAAAACAGAGTCTGTTTTGGCACCCCCCTCTGCCACGTG
CACAACTCGCTGAAGTATGGGGTAAAAGCCAAAACCTCGACCATCGTCAA
CGCGGGGAAAGGATTGTTTGCAACTCGAGCATTCCCAAAGAATTCGTGGA
TTTGTCCGTACTTGGGTGAGAAAACCTCGAAGGATTGTATTCAAAAACGC
TACCCAGGGGACATGACGGCGGCTTACGCGGAGATACTTCCGGGACCGGA
GCAACTGCATATTGACAGTGCGTGCAAACGGGGCGTCGCTAGTCTTGCGA
ATGGTCTATTCAACGCGAACGGTAGCGTGTCGTCTCTCAGCCGCCACAAT
TGTGTGTCGAGATACCGTCCTGTCGGAGATGGAGTGCCCGGCGTGTGGCT
CAAGTCGACCAAACCACTCAAAATTGGAGACGAAATTTTCAATTGGTACG
GCGACGGAGGGTACATGTTGCAACACAACCATTCGACAAAGCGACGAACC
AAGGCACCCGACACGCGACCTTGTTGA
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protein sequence of EsuBft1113_4a-0001

>EsuBft1113_4 ID=EsuBft1113_4|Name=EsuBft1113_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=208bp
MPVRKRAPKEYSFRTASWSCPLTCEQCQEVRANGMRCKNRVCFGTPLCHV
HNSLKYGVKAKTSTIVNAGKGLFATRAFPKNSWICPYLGEKTSKDCIQKR
YPGDMTAAYAEILPGPEQLHIDSACKRGVASLANGLFNANGSVSSLSRHN
CVSRYRPVGDGVPGVWLKSTKPLKIGDEIFNWYGDGGYMLQHNHSTKRRT
KAPDTRPC
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mRNA from alignment at Scaffold_463:129866..130492-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1113_4a-0001 ID=EsuBft1113_4a-0001|Name=EsuBft1113_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=627bp|location=Sequence derived from alignment at Scaffold_463:129866..130492- (Ectocarpus subulatus male Bft15b)
ATGCCTGTGCGTAAACGTGCGCCGAAGGAATACTCTTTTCGCACTGCGAG
TTGGTCGTGCCCCCTCACTTGTGAGCAATGCCAAGAGGTGAGGGCGAACG
GCATGAGGTGCAAAAACAGAGTCTGTTTTGGCACCCCCCTCTGCCACGTG
CACAACTCGCTGAAGTATGGGGTAAAAGCCAAAACCTCGACCATCGTCAA
CGCGGGGAAAGGATTGTTTGCAACTCGAGCATTCCCAAAGAATTCGTGGA
TTTGTCCGTACTTGGGTGAGAAAACCTCGAAGGATTGTATTCAAAAACGC
TACCCAGGGGACATGACGGCGGCTTACGCGGAGATACTTCCGGGACCGGA
GCAACTGCATATTGACAGTGCGTGCAAACGGGGCGTCGCTAGTCTTGCGA
ATGGTCTATTCAACGCGAACGGTAGCGTGTCGTCTCTCAGCCGCCACAAT
TGTGTGTCGAGATACCGTCCTGTCGGAGATGGAGTGCCCGGCGTGTGGCT
CAAGTCGACCAAACCACTCAAAATTGGAGACGAAATTTTCAATTGGTACG
GCGACGGAGGGTACATGTTGCAACACAACCATTCGACAAAGCGACGAACC
AAGGCACCCGACACGCGACCTTGTTGA
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Coding sequence (CDS) from alignment at Scaffold_463:129866..130492-

>EsuBft1113_4a-0001 ID=EsuBft1113_4a-0001|Name=EsuBft1113_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=627bp|location=Sequence derived from alignment at Scaffold_463:129866..130492- (Ectocarpus subulatus male Bft15b)
ATGCCTGTGCGTAAACGTGCGCCGAAGGAATACTCTTTTCGCACTGCGAG
TTGGTCGTGCCCCCTCACTTGTGAGCAATGCCAAGAGGTGAGGGCGAACG
GCATGAGGTGCAAAAACAGAGTCTGTTTTGGCACCCCCCTCTGCCACGTG
CACAACTCGCTGAAGTATGGGGTAAAAGCCAAAACCTCGACCATCGTCAA
CGCGGGGAAAGGATTGTTTGCAACTCGAGCATTCCCAAAGAATTCGTGGA
TTTGTCCGTACTTGGGTGAGAAAACCTCGAAGGATTGTATTCAAAAACGC
TACCCAGGGGACATGACGGCGGCTTACGCGGAGATACTTCCGGGACCGGA
GCAACTGCATATTGACAGTGCGTGCAAACGGGGCGTCGCTAGTCTTGCGA
ATGGTCTATTCAACGCGAACGGTAGCGTGTCGTCTCTCAGCCGCCACAAT
TGTGTGTCGAGATACCGTCCTGTCGGAGATGGAGTGCCCGGCGTGTGGCT
CAAGTCGACCAAACCACTCAAAATTGGAGACGAAATTTTCAATTGGTACG
GCGACGGAGGGTACATGTTGCAACACAACCATTCGACAAAGCGACGAACC
AAGGCACCCGACACGCGACCTTGTTGA
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