EsuBft1113_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1113_3a-0001
Unique NameEsuBft1113_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_463contigScaffold_463:135356..136881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LP32
ProteomeIdEsuBft1113_3
Protein domainsPTHR24198
Protein domainsIPR002110
Protein domainsIPR020683
Ownerapollo_admin@sb-roscoff.fr
Noteankyrin repeat domain-containing protein 17 os:mus musculus gn:ankrd17 pe:1 sv:2 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length1419
Hectar predicted targeting categoryother localisation
Evalue2.54e-31
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameANKRD65
Descriptionspectrin binding
COG categoryI
Cross References
External references for this mRNA
DatabaseAccession
GO0086065
GO0031227
GO0034613
GO0050896
GO1901363
GO0034765
GO0051924
GO0048731
GO0055117
GO0007009
GO0043229
GO0048518
GO0097159
GO0016020
GO0086001
GO0044459
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1113_3aEsuBft1113_3aEctocarpus subulatus male Bft15bgeneScaffold_463 135356..136881 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1113_3a-0001-exonagat-exon-84743Ectocarpus subulatus male Bft15bexonScaffold_463 135356..136752 +
EsuBft1113_3a-0001-exonEsuBft1113_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_463 136860..136881 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1113_3a-0001-cdsEsuBft1113_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_463 135356..136752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1113_3a-0001EsuBft1113_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_463 135356..136881 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1113_3a-0001 ID=EsuBft1113_3a-0001|Name=EsuBft1113_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1419bp|location=Sequence derived from alignment at Scaffold_463:135356..136881+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGGCGAACCACCCAACTATCCACGTGGGCCTTACAGCGATTTACA
TCGTGCCGTGGCGAGCGGATCCACAAGGCGTGTCAGCATGCAGCTCGACA
CGGGGATCGACATCAACATCGCGAGCGACCCTGCGAAGGACACGCCCCTC
ATCATCGCCTGTCGCCATGGTGAGTTGGCATTGGTCCAGCTTCTTCTCGA
CAGGGGTGCCGACACGGAGCGTACTAACCAAGAAGGCAGGACCGCACTCT
TTGAATCACTTCACTACCCTAGAATTGCGAGGATCCTCATCGACCGCGGT
GCAAACCACGGGGCACAGGATAACCATGGTGCCACACCGCTGCTGCTGGC
TGCCACCCGAAAGAGCGGCTGTGCCGGACAAGCTGTGACGGAGATGTTAC
TTCAGCATGGAGCCAATCCCGACACGGCAGACAACAGCGGATTTACACCG
CTTCACATCGCTGCTTCAAGGCAGTGCTGTGCGTTCATGTCTCTGATCCT
TGGTGCTGGAGCGGGAGTTAACGCCCGTCATCGACCAGGCGGGGAGACGC
CACTTTTTGTTGCCGCTAGGCTCGGAAGGCTGTTGTCGGTGAAAGTTCTC
CTCCGTTTCAAAGCGGATGCACTGCTTCCCGCGCAGTTCGAGAATAGAAA
AGATAAGTGGCTGCCACTCGACGTCGCGGCGCACCGTGGCCACCTCGCCG
TCGTTCGCGAGCTGGTGCAGCAAGTCGGACTCGGGGGCTGTGGGGGTCCA
TCTGGTGGTGCGGATGCTCTCGTGATTACCGCAAGCGAGGGTAGACTGGA
CATCATGGCCTTCCTCTTGGACGCCGGCGTGGTAGACAATGGTGACGGCC
TTCGATCTGCCATCAAGGCGGGTCACAGCAAGTCCGTGCGGCTTCTGATG
GAGCGGCGAGCGGGGGATGTGAAGCAGTACGTTTCGTCGGAAAGCATCGG
TGATGAGGCACGAACCGTTCTGTTCCATTGCTTCCATGCACAGGCACTGG
CACCTTCTTCATGTAGAATCATGCAGACACTTATTGAGGCCGGGGCGACC
ACTCGCGTCAACGTGATGATAAACTACGAAGACAGACCGCCTACTATGTT
GACCGATCTGGTGCAGTACGCCGACTACCTGATCAACCGCGGTAGAACAA
CTCTAACCGCAGAGGAGGAGATGATGCATGGACTCAGGGGTTTGCGTCGC
CTGCTCATGCAGAAAGAGGCGGTGACTGCTACTTCGTGGGCGTGGCCGGC
CGGAGAGGGGGGCATGCGCTGTGGGGGCACCAGGGGCATCAGGCGCACCA
AGAAAAAAACGAAGCCATCTGCAGCTCTGGCGACGATGATGCCGCTGCTG
AGGCGCCGGGATGCGAAGCGCGGGATGGCTCTGCGCGCCCTTACCAGGCG
CAAATCGACGGCGACCTGA
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protein sequence of EsuBft1113_3a-0001

>EsuBft1113_3 ID=EsuBft1113_3|Name=EsuBft1113_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=472bp
MPGEPPNYPRGPYSDLHRAVASGSTRRVSMQLDTGIDINIASDPAKDTPL
IIACRHGELALVQLLLDRGADTERTNQEGRTALFESLHYPRIARILIDRG
ANHGAQDNHGATPLLLAATRKSGCAGQAVTEMLLQHGANPDTADNSGFTP
LHIAASRQCCAFMSLILGAGAGVNARHRPGGETPLFVAARLGRLLSVKVL
LRFKADALLPAQFENRKDKWLPLDVAAHRGHLAVVRELVQQVGLGGCGGP
SGGADALVITASEGRLDIMAFLLDAGVVDNGDGLRSAIKAGHSKSVRLLM
ERRAGDVKQYVSSESIGDEARTVLFHCFHAQALAPSSCRIMQTLIEAGAT
TRVNVMINYEDRPPTMLTDLVQYADYLINRGRTTLTAEEEMMHGLRGLRR
LLMQKEAVTATSWAWPAGEGGMRCGGTRGIRRTKKKTKPSAALATMMPLL
RRRDAKRGMALRALTRRKSTAT
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mRNA from alignment at Scaffold_463:135356..136881+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1113_3a-0001 ID=EsuBft1113_3a-0001|Name=EsuBft1113_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1526bp|location=Sequence derived from alignment at Scaffold_463:135356..136881+ (Ectocarpus subulatus male Bft15b)
ATGCCAGGCGAACCACCCAACTATCCACGTGGGCCTTACAGCGATTTACA
TCGTGCCGTGGCGAGCGGATCCACAAGGCGTGTCAGCATGCAGCTCGACA
CGGGGATCGACATCAACATCGCGAGCGACCCTGCGAAGGACACGCCCCTC
ATCATCGCCTGTCGCCATGGTGAGTTGGCATTGGTCCAGCTTCTTCTCGA
CAGGGGTGCCGACACGGAGCGTACTAACCAAGAAGGCAGGACCGCACTCT
TTGAATCACTTCACTACCCTAGAATTGCGAGGATCCTCATCGACCGCGGT
GCAAACCACGGGGCACAGGATAACCATGGTGCCACACCGCTGCTGCTGGC
TGCCACCCGAAAGAGCGGCTGTGCCGGACAAGCTGTGACGGAGATGTTAC
TTCAGCATGGAGCCAATCCCGACACGGCAGACAACAGCGGATTTACACCG
CTTCACATCGCTGCTTCAAGGCAGTGCTGTGCGTTCATGTCTCTGATCCT
TGGTGCTGGAGCGGGAGTTAACGCCCGTCATCGACCAGGCGGGGAGACGC
CACTTTTTGTTGCCGCTAGGCTCGGAAGGCTGTTGTCGGTGAAAGTTCTC
CTCCGTTTCAAAGCGGATGCACTGCTTCCCGCGCAGTTCGAGAATAGAAA
AGATAAGTGGCTGCCACTCGACGTCGCGGCGCACCGTGGCCACCTCGCCG
TCGTTCGCGAGCTGGTGCAGCAAGTCGGACTCGGGGGCTGTGGGGGTCCA
TCTGGTGGTGCGGATGCTCTCGTGATTACCGCAAGCGAGGGTAGACTGGA
CATCATGGCCTTCCTCTTGGACGCCGGCGTGGTAGACAATGGTGACGGCC
TTCGATCTGCCATCAAGGCGGGTCACAGCAAGTCCGTGCGGCTTCTGATG
GAGCGGCGAGCGGGGGATGTGAAGCAGTACGTTTCGTCGGAAAGCATCGG
TGATGAGGCACGAACCGTTCTGTTCCATTGCTTCCATGCACAGGCACTGG
CACCTTCTTCATGTAGAATCATGCAGACACTTATTGAGGCCGGGGCGACC
ACTCGCGTCAACGTGATGATAAACTACGAAGACAGACCGCCTACTATGTT
GACCGATCTGGTGCAGTACGCCGACTACCTGATCAACCGCGGTAGAACAA
CTCTAACCGCAGAGGAGGAGATGATGCATGGACTCAGGGGTTTGCGTCGC
CTGCTCATGCAGAAAGAGGCGGTGACTGCTACTTCGTGGGCGTGGCCGGC
CGGAGAGGGGGGCATGCGCTGTGGGGGCACCAGGGGCATCAGGCGCACCA
AGAAAAAAACGAAGCCATCTGCAGCTCTGGCGACGATGATGCCGCTGCTG
AGGCGCCGGGATGCGAAGCGCGGGATGGCTCTGCGCGCCCTTACCAGGTG
TGTGTATGTGTGTGTGTTTTCACAATATGCTAACAAAACGGCAAATTTGT
AGCGCGGCGGCCAGAAACAAAACTCCTTCCGTTCGTTTGAATCTGTTTTT
ACAGGCGCAAATCGACGGCGACCTGA
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Coding sequence (CDS) from alignment at Scaffold_463:135356..136881+

>EsuBft1113_3a-0001 ID=EsuBft1113_3a-0001|Name=EsuBft1113_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1419bp|location=Sequence derived from alignment at Scaffold_463:135356..136881+ (Ectocarpus subulatus male Bft15b)
ATGCCAGGCGAACCACCCAACTATCCACGTGGGCCTTACAGCGATTTACA
TCGTGCCGTGGCGAGCGGATCCACAAGGCGTGTCAGCATGCAGCTCGACA
CGGGGATCGACATCAACATCGCGAGCGACCCTGCGAAGGACACGCCCCTC
ATCATCGCCTGTCGCCATGGTGAGTTGGCATTGGTCCAGCTTCTTCTCGA
CAGGGGTGCCGACACGGAGCGTACTAACCAAGAAGGCAGGACCGCACTCT
TTGAATCACTTCACTACCCTAGAATTGCGAGGATCCTCATCGACCGCGGT
GCAAACCACGGGGCACAGGATAACCATGGTGCCACACCGCTGCTGCTGGC
TGCCACCCGAAAGAGCGGCTGTGCCGGACAAGCTGTGACGGAGATGTTAC
TTCAGCATGGAGCCAATCCCGACACGGCAGACAACAGCGGATTTACACCG
CTTCACATCGCTGCTTCAAGGCAGTGCTGTGCGTTCATGTCTCTGATCCT
TGGTGCTGGAGCGGGAGTTAACGCCCGTCATCGACCAGGCGGGGAGACGC
CACTTTTTGTTGCCGCTAGGCTCGGAAGGCTGTTGTCGGTGAAAGTTCTC
CTCCGTTTCAAAGCGGATGCACTGCTTCCCGCGCAGTTCGAGAATAGAAA
AGATAAGTGGCTGCCACTCGACGTCGCGGCGCACCGTGGCCACCTCGCCG
TCGTTCGCGAGCTGGTGCAGCAAGTCGGACTCGGGGGCTGTGGGGGTCCA
TCTGGTGGTGCGGATGCTCTCGTGATTACCGCAAGCGAGGGTAGACTGGA
CATCATGGCCTTCCTCTTGGACGCCGGCGTGGTAGACAATGGTGACGGCC
TTCGATCTGCCATCAAGGCGGGTCACAGCAAGTCCGTGCGGCTTCTGATG
GAGCGGCGAGCGGGGGATGTGAAGCAGTACGTTTCGTCGGAAAGCATCGG
TGATGAGGCACGAACCGTTCTGTTCCATTGCTTCCATGCACAGGCACTGG
CACCTTCTTCATGTAGAATCATGCAGACACTTATTGAGGCCGGGGCGACC
ACTCGCGTCAACGTGATGATAAACTACGAAGACAGACCGCCTACTATGTT
GACCGATCTGGTGCAGTACGCCGACTACCTGATCAACCGCGGTAGAACAA
CTCTAACCGCAGAGGAGGAGATGATGCATGGACTCAGGGGTTTGCGTCGC
CTGCTCATGCAGAAAGAGGCGGTGACTGCTACTTCGTGGGCGTGGCCGGC
CGGAGAGGGGGGCATGCGCTGTGGGGGCACCAGGGGCATCAGGCGCACCA
AGAAAAAAACGAAGCCATCTGCAGCTCTGGCGACGATGATGCCGCTGCTG
AGGCGCCGGGATGCGAAGCGCGGGATGGCTCTGCGCGCCCTTACCAGGCG
CAAATCGACGGCGACCTGA
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