Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1112_3 |
| Protein domains | IPR009069 |
| Protein domains | Coil |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Length | 106 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Cysteine alpha-hairpin motif superfamily |
| Ec32 ortholog | Ec-26_005030.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1112_3a-0001 ID=EsuBft1112_3a-0001|Name=EsuBft1112_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1060bp|location=Sequence derived from alignment at Scaffold_189:7810..11481+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TTCACACGCTGCTAGCTTCAAACTGCGCGAAACGATGACGGCAAGCAAGA
TGGAGTCGGAGTGCAGAGAATTCGCTGCGGAAAGCTTCAAGTGCATGGAA
AGCTTCGGCACCAATCGAGAAAAGGCAAAGGACGCCTGCGGGCCGTTCTT
CGAGCGCTACAAGGAATGCCTGCAAAGAGAATCAGACGCGTTAAAGAAGG
CACAAAGGGAGGGCCCACCGCGAAGATTCTTCGGATGAACAACACTGCTG
CAGCGCACCAAGCAACAGCAAGAAGAATAGATACATAGGTAGATGGATGG
AAGGCTGTACAAGAATTTGGACGACGAGCGGGACGAGGACGACGCCAGCG
GCCACCCTTTCCCTCGTGGGGTTGGTTTTCTGTTGTTTTTGTTTTTTTGG
GAGTTTACTCTTTTCTTTCAGAATTAGCATCTTTTTTTTTTGTCGTTTCA
CGTTCCAGATAGTAAGAAAGCAGTAGGTCACAAGAAACACGGCAGGCTTC
TCGTCGAGTGTAGCAATGTTCGGGTCTTGTGTCTTCTTGTCAAGGCGTAG
GAAGAGGAATGTTCCCACTATCGATGCCAACGCAGCAATCTGGAGGTGTG
GTAGAGCGCCGTGAATTCACCCCGTGTTGATGTTCTCGAGTGTTGCAAGG
TTGGCTTATGGCGATGCTGCCTCGGAACAAAGGGGCAGTTTTGACGATGC
AATAGGGGTGAGGCTCATTGAAGACATACAGTGGGGGTCCCGGTTTTGTG
CTGGCACGTGCCCTGAAAATTCATCGGCACCACATACAATACCGGACCGG
CTCGATTCAAAGTGCCGACAATGACTTGGAAATTCGGTGTGTGCCCGCCA
ATAACCCGGGCACTATACCGGGGCATTGGCACTGTTCAACCGGCACTAAA
GAGGGCACCCTCTGTGCTCCGTTCTTGTTTGCTGGCTCCTTTTTTGTTTT
GGGATCTTCGACATCTACAAATTGCGCCTCACAGATGGTTTAGCTAGCCG
TAAGGAGGAAGTTCGATATGCGACACGGTTATCGCGCAACAAGCATCGGT
CTCACACTTG back to topprotein sequence of EsuBft1112_3a-0001 >EsuBft1112_3 ID=EsuBft1112_3|Name=EsuBft1112_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=67bp
MTASKMESECREFAAESFKCMESFGTNREKAKDACGPFFERYKECLQRES
DALKKAQREGPPRRFFG back to topmRNA from alignment at Scaffold_189:7810..11481+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1112_3a-0001 ID=EsuBft1112_3a-0001|Name=EsuBft1112_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3672bp|location=Sequence derived from alignment at Scaffold_189:7810..11481+ (Ectocarpus subulatus male Bft15b)
TTCACACGCTGCTAGCTTCAAACTGCGCGAAACGATGACGGCAAGCAAGA
TGGAGTCGGAGTGCAGAGAATTCGCTGCGGAAAGCTTCAAGTGCATGGAA
AGCTTCGGCACCAATCGAGAAAAGGCAAAGGTGTGATGTTGATGTTCGTG
CACAGCATGCATAGACTGCTGTACATCATCTACCTGTGTACTCCTGCTTG
TGCGCTGCTGTGCACCCTATCAACCACTTGCCAGAGTACTGCTGTTCAGC
GGCCAAGACCGTTACATCACACCCAATTCCACCCATCCCTCTCAATTCCT
GTGAGGTAAATATCGATGATCCAACGTCAGATCGCACTCGTCGCGACTCG
AACCCGTAGCTAGGGAGGCGTGTCGGTCGTTCGCTGTTCGTCTTCGGATT
GCGCATGGAATGGAGGGATCAACTCGATTGTTGTCAACTACCTTAAGGTT
CCGACGTATGAAGTTTGTTTGTTGGTGTTAATTCTGTCGCACGATGTATC
CGCACGTGAAAACACGAAGACACATCCTTGTACCGCTGTAGAGCAACGGG
GCTAATCCTCCCAAGTACTGGGAGCCCAAATGGGACACTTTGGGGGGACA
AATCACTCAAATGCTTGTTTACCGCACCGTGGTCGTCACTATGCTTTGCT
CGTGAGACGTGCGTGGGAAACCTTGATCTAGCATGTTTGTGTGAGGTGGT
ACGCTGTGTAATATCCTGCCGTGTGATTCCTGTGTGCCTCTCCTGACCCT
CTGACTTGTGTACACAATCTCCCAAGCCGCGAGTCCCCTTGTTGGTAAAA
CTGAACGTAGCCTAGTAAACTGGGAAAAATTCTTACTTGCCTTCACCATA
GAAAGTGTCCCCGGTGCATTTGGAGACACTTTCCATACTGAAGCCAAGTC
AGCCTTCGGCCCTGGGGACTGTACAGCCTCTCCCAATGAAAGGACTGTAC
AGCCTCTCCCAATGAACGGACGCGTTTTTTTCTAGACCCAATAACCTGTA
ACTAACAAGGTACTGTAGGAAGGTTAGCACACGAGATTGAACGATCCCTG
TTCGAGTCCCCCATGGGGCACATTTTTTGCCTACACGTTGTCGTGCTTGT
TTTTTTCACTCGTATGTATTTGCTGAAAAAAGTAGCCTTTTCCGCTGCAG
ATTGCAAGATACATCTATCTCACAAGTATTTATCTATCTCATGACTTCCG
GAATGTTCACACCGCGTAGCCGTGCACTTGTTCAAATACAGCCGCTGGCA
TCAACGTCACACTGCTGTTTATTGTGCTACAGCAGTGTACTGCTGTGGTG
TCGTGCACACTTACCGTATAGTGGATTGGGTCAGCTCCCACTATATAGAA
ACTCCCTTTGAAATAGACTCTCAATACCTCCGTCAAGTATCTCCTCTTGT
TTCAGAGCGCTCCCGTGCCAAGCCTTGTTCTACAGAGTTCAGCTTTTTGT
CAGCGCCTCATGGGCTTTGTTTCCAAGGGTTCCGTTGATTCGAGCTACTT
GATCTAGCCAGATACATGCGGGCACAACATCATCCAGCCGTCTCACGCTC
CATGTTGCTGCTGCCGCTGTTTTCGTCGGTTTCATCTGCGGGCTCCTAAC
CGTGCACCACCCGCTCATCGCCACGGTCAACGTCGGCAGGACGCCTGCGG
GCCGTTCTTCGAGCGCTACAAGGAATGCCTGCAAAGAGAATCAGACGCGT
TAAAGAAGGTATGTACCTTTGTAATTCCCAATGTGGCTCAAGTGACTACG
CCTTGAACGGCCAGGCCAACACCTCCAGGTCTCCCTCGTCCACGAGAGTT
CAATCGTTACGACGCGTGTGACTTAACCAACGCACGCGTGCCTGATTCCG
AGTGACCTGCTGCCAATGTAAACTTTGTTGCGATTTGAATGCGTGTAAAT
ATGGTGGCACTCTTGTTGTTGTCTTCCCAGTTCGCACGTCTTAGTTCCGA
GTGACCTGCTGTCCATTCGATGTGCTTTCGATTTTATCGTTCCCACCCCC
CCCCTCCCTCGGTGTTTGCCATTGGGGTTGGGCTTTCGTCGCTTGGCAAC
GACGTTGTAAAACAAGCCGCCCCCCCCGGTGTTTGCCATCGGGATTGGGT
TTTCGTCGCTTGGCAACGACGTTCTAAAACAAGCCAATTCGCTTCGTGAA
CTCGGCAACCTCCCGTTTTTTTTACCTCCGTTTTTTTTTTGGCGGTATCC
ATAATGGTGGTCGAGTAGTATGCACCCCCGAGGCAGTTACACAGTGCTTA
CAATTGTCTCTGCACGTGAAAGCACCAGAAAGTAAATTAAGTCATACGCA
GCTGTCATCCGTACGCAAGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCT
CCGCGCAAGGGGGATGATCGCACCACGTTGTGTTAAGATGGTCAAGCACC
CTCGAGGCAGTTACACAGTGCTTACAGCTGTCTCTGGAAGTGAAGCACCA
GAAAATAAATTAAGTCGTACGCAGCTGTCATCCGCATGTTAGGAAGTAAG
CACAAGATGCCGAACACCCTTAGCAGGATGCAGCGCACCCTTCATGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCGG
CGGCACCATAGGCACAAAGGGAGGGCCCACCGCGAAGATTCTTCGGATGA
ACAACACTGCTGCAGCGCACCAAGCAACAGCAAGAAGAATAGATACATAG
GTAGATGGATGGAAGGCTGTACAAGAATTTGGACGACGAGCGGGACGAGG
ACGACGCCAGCGGCCACCCTTTCCCTCGTGGGGTTGGTTTTCTGTTGTTT
TTGTTTTTTTGGGAGTTTACTCTTTTCTTTCAGAATTAGCATCTTTTTTT
TTTGTCGTTTCACGTTCCAGATAGTAAGAAAGCAGTAGGTCACAAGAAAC
ACGGCAGGCTTCTCGTCGAGTGTAGCAATGTTCGGGTCTTGTGTCTTCTT
GTCAAGGCGTAGGAAGAGGAATGTTCCCACTATCGATGCCAACGCAGCAA
TCTGGAGGTGTGGTAGAGCGCCGTGAATTCACCCCGTGTTGATGTTCTCG
AGTGTTGCAAGGTTGGCTTATGGCGATGCTGCCTCGGAACAAAGGGGCAG
TTTTGACGATGCAATAGGGGTGAGGCTCATTGAAGACATACAGTGGGGGT
CCCGGTTTTGTGCTGGCACGTGCCCTGAAAATTCATCGGCACCACATACA
ATACCGGACCGGCTCGATTCAAAGTGCCGACAATGACTTGGAAATTCGGT
GTGTGCCCGCCAATAACCCGGGCACTATACCGGGGCATTGGCACTGTTCA
ACCGGCACTAAAGAGGGCACCCTCTGTGCTCCGTTCTTGTTTGCTGGCTC
CTTTTTTGTTTTGGGATCTTCGACATCTACAAATTGCGCCTCACAGATGG
TTTAGCTAGCCGTAAGGAGGAAGTTCGATATGCGACACGGTTATCGCGCA
ACAAGCATCGGTCTCACACTTG back to topCoding sequence (CDS) from alignment at Scaffold_189:7810..11481+ >EsuBft1112_3a-0001 ID=EsuBft1112_3a-0001|Name=EsuBft1112_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=204bp|location=Sequence derived from alignment at Scaffold_189:7810..11481+ (Ectocarpus subulatus male Bft15b)
ATGACGGCAAGCAAGATGGAGTCGGAGTGCAGAGAATTCGCTGCGGAAAG
CTTCAAGTGCATGGAAAGCTTCGGCACCAATCGAGAAAAGGCAAAGGACG
CCTGCGGGCCGTTCTTCGAGCGCTACAAGGAATGCCTGCAAAGAGAATCA
GACGCGTTAAAGAAGGCACAAAGGGAGGGCCCACCGCGAAGATTCTTCGG
ATGA back to top
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