EsuBft1111_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1111_7a-0001
Unique NameEsuBft1111_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_389contigScaffold_389:753002..756878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LGN4
ProteomeIdEsuBft1111_7
Protein domainsIPR023571
Protein domainsIPR019972
Protein domainsIPR000218
Ownerapollo_admin@sb-roscoff.fr
Note60s ribosomal protein l23 os:danio rerio gn:rpl23 pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length1083
Hectar predicted targeting categoryother localisation
Evalue1.39e-96
EggNOG OGsCOG0093@1|root,KOG0901@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L14b/L23e
Ec32 orthologEc-10_002900.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameRPL23
KEGG koko:K02894
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000122,GO:0000184,GO:0000956,GO:0001221,GO:0001223,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0004857,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0006139,GO:0006355,GO:0006357,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006606,GO:0006610,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008092,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008284,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009719,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010948,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0017022,GO:0017038,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0019899,GO:0022411,GO:0022625,GO:0022626,GO:0023051,GO:0023056,GO:0030162,GO:0030234,GO:0030867,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031625,GO:0031647,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032269,GO:0032984,GO:0032986,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042127,GO:0042175,GO:0042176,GO:0042177,GO:0042221,GO:0042886,GO:0043043,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044389,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045786,GO:0045787,GO:0045861,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0055105,GO:0055106,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070180,GO:0070727,GO:0070887,GO:0070972,GO:0071156,GO:0071157,GO:0071158,GO:0071236,GO:0071310,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0072716,GO:0072717,GO:0080090,GO:0090068,GO:0090150,GO:0090304,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098772,GO:0098827,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901796,GO:1901798,GO:1902531,GO:1902533,GO:1902679,GO:1902680,GO:1903050,GO:1903051,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903506,GO:1903507,GO:1903508,GO:1904666,GO:1904667,GO:1990904,GO:1990948,GO:2000058,GO:2000059,GO:2000112,GO:2000113,GO:2001141
Descriptionlarge ribosomal subunit rRNA binding
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0000184
GO0005730
GO0070062
GO0006614
GO0005622
GO0006415
GO0003333
GO0006414
GO0006413
GO0019083
GO0022625
GO0006610
GO0003735
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1111_7aEsuBft1111_7aEctocarpus subulatus male Bft15bgeneScaffold_389 753002..756878 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1111_7a-0001EsuBft1111_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_389 753591..756807 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1111_7a-0001-exonagat-exon-27839Ectocarpus subulatus male Bft15bexonScaffold_389 753002..753673 -
EsuBft1111_7a-0001-exonEsuBft1111_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_389 754296..754409 -
EsuBft1111_7a-0001-exonagat-exon-27837Ectocarpus subulatus male Bft15bexonScaffold_389 754697..754756 -
EsuBft1111_7a-0001-exonagat-exon-27836Ectocarpus subulatus male Bft15bexonScaffold_389 755382..755534 -
EsuBft1111_7a-0001-exonagat-exon-27838Ectocarpus subulatus male Bft15bexonScaffold_389 756795..756878 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1111_7a-0001-exonagat-three_prime_utr-1065Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_389 753002..753590 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1111_7a-0001-cdsEsuBft1111_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_389 753591..753673 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1111_7a-0001-exonagat-five_prime_utr-674Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_389 756808..756878 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1111_7a-0001 ID=EsuBft1111_7a-0001|Name=EsuBft1111_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1083bp|location=Sequence derived from alignment at Scaffold_389:753002..756878- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGCCGCCTCGCGCTCTCTCACAGCCCCTTCCCTAGGTGTCGGAGTACCG
AAGCTCACCCCTTTTCTCATCATGTCGAAGCGTGGGCGCGCCGGTGCCCA
GGGCAACAAGTACCGCATGACCCTCGGTTTGCCCGTGGCCGCGGTCATGA
ACTGCTGCGACAACAGCGGGGCCAAGAACCTGTACATCATCTCGGTGTGC
GGCATCAAGGGTCGCCTGAACCGCCTGCCCTCCGCCGGTGTCGGTGACAT
GGTGATGGCCACTGTCCGCAAGGGAAAGCCGGAGCTCAGGAAGAAGGTGA
TGCCTGCCGTTGTGGTGAGGCAGCGCAAGGCCTGGAGGCGGAAGGACGGT
GTGTTCATCTACTTCGAGGACAATGGCGGCGTTATTGTCAACAACAAGGG
AGAGATGAAGGGTTCCGCGATCAACGGCCCCGTGGCTAAGGAGTGCGCCG
ACCTGTGGCCCCGTATCGCCAGCAACGCTGGGTCCATCGTCTAAGAGAAG
AAATGACGCTCGCAAGACCACCCACCTTTGTCGTCGACAAGATGACACCG
GTGGCGGCACACCTCGATGAAAACTGTTCTTATTCCGCTCGCCTGTCTAC
TGGGTTGAAGTGCAGACATTGTCCGCGGCTTTGTGTGGAGTTTGAGCCTC
TTGAGTTCCGTTGAGAAGCGCAGATGAGAGAGGCGAGGAAAGGGGGGGGG
GAGCTGCAATTCTGAATTTAACAAGGGTTCAGACAACCTTGTATTTGGTG
CCTCCGGCACAAATGCTGTGCCCATGTTTGATAGCGTGGCGTGCTGGCAA
TGAAGCGGCAGCTTTGCTGTAGCTTTGCGGTATGGGTTGTACGAGGCAGA
AAGCTTCCCAAGCGACATGTGTTCGCACGCACTTTGTTCTGCCCTCGTTA
CGTGCAATCGCTACTGTCAAGCTGCGCACAGTCGTTGTCGCGCTGCGCCT
CACATTTAGGTGCGTTGCGCGGTGCGCACGGCACAAGCTGCGTCTTGTCA
TGTCATTACACCACCCGTAAATACCACGATCCACGAACCAACCTGGTTCG
AGAAAGGGCCGTGCGCGACGAGAGACAGCCGGC
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protein sequence of EsuBft1111_7a-0001

>EsuBft1111_7 ID=EsuBft1111_7|Name=EsuBft1111_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=140bp
MSKRGRAGAQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLN
RLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFED
NGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV
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mRNA from alignment at Scaffold_389:753002..756878-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1111_7a-0001 ID=EsuBft1111_7a-0001|Name=EsuBft1111_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3877bp|location=Sequence derived from alignment at Scaffold_389:753002..756878- (Ectocarpus subulatus male Bft15b)
GTGCCGCCTCGCGCTCTCTCACAGCCCCTTCCCTAGGTGTCGGAGTACCG
AAGCTCACCCCTTTTCTCATCATGTCGAAGCGTGGTAAGTGCTGTCGAGG
CGTGCCGTCTTGCGTTTGTCTGCCGTAGCTGTGTTGTGGTTGTGCCTTTG
GGTGCTGTTCGGATGGAAAACACACGGAAGAGCAAAGTTGGGTGGTGTGC
GGCGGATAAGGGCTTGGCTGGGCTTCGACCACACGCGCGAGTGCTCCGCG
CAAGGACGGTAGAAGGAGGTAGACCTGTATTTTTGCGAAGCTGTTGCCAA
AGTTATTGCCTTGGACTTTTTTTTTGCTGGTATCGATTTCAACCGGCAGT
CGCAATCCATGCCATCTCTATCTCGGCTTCCTTTCCCTAACGCTGCTGGG
TCTCGGATGTTGTCCACGGATCACATACAGCGAGTGCCTAATTGCCCACC
ACAGCTGCATTGTTGTTGCAGTCCTTTCAGCTCTGAGCTGAACAATATAG
AGGTTACTTCAGCGTTTTGGCTACCTTGGTTTATATGTCATTCATGTGGC
TCGGCGACCTATGCTCTCGATGTGAAGCATCAGCTTCCCCTCCCCCACAC
TACTGCTGGAGTAGTTACGCAAGCAAGCCCACCACACACGAAACGCGATT
TGTAGCTTTGGCATGTACTGAAGGTGCCGCAACGGAAGATGGAGGATGAG
CGAAGGATGGGCCAGTACCATGGAGTTTCATGGGACATAAACACAAGGCA
CATCTTGAACCAGCTGTTTTGCAAACCTCGTTTCAGCGTTTCCGTATCCA
GTCTTTTTTTTGAGGGGCTCCAACTTACGACTCTGGGGTGGTATCTACAA
CAGTACCTGTAGAGACGGGAAGTCTCCACGAGTATTCCCGGGTTGTGTCT
TATGTTTTCCGATTGTGCTTGTAGTTCAGTACACAGCCGGTTGGATATGG
CCTATTTGTACAGGGTACTCAGTATCGTGAACTTTGAACCCCAGAGCAGG
AAGATTTCAGCGACGACGTAAGAGTAAGGTGCTGCGAACGGAAACGCCCA
TCTCCGCTACTTGAGTTGAGACAACAGCAGTATTTTGAGTACACGGTCAC
GACGTCGAACCCACGCTGAAGACGGTCGCCTCCGGCCAAAATTTGAATCC
CCTCCTCTTTCAGCACTTTCGGTGTGTACTCGTCCAACGCGCCCGATTCT
TTTTTAGGATATATTTTGTCCCCCCTCCTTCCCCCCGCTCTCTCAGTCGA
CCTGATCCACACGCACGCGTCCAAGATTTCGTTTGTTGCTTGTTTTTCGT
GTTGAATCCCCCCTCCCTCTCGTCCTCTTTTTGTCTCGTGACAGGGCGCG
CCGGTGCCCAGGGCAACAAGTACCGCATGACCCTCGGTTTGCCCGTGGCC
GCGGTCATGAACTGCTGCGACAACAGCGGGGCCAAGAACCTGTACATCAT
CTCGGTGTGCGGCATCAAGGGTCGCCTGAACCGCCTGCCCTCCGCCGGTA
GGTGTACGGGCCGCATCGGTAGATACCACAAACTCTGCGTGCAGCTACAA
GCTGTGTACGAGTAAGCCGTCAACGAGCAAGATGAACACACCTCAAGCAG
CAAGAAGTCTACATGAACGCGCGACCACATCCGACATGAAATAGTGAACT
CCAGCCTTCAGCCTTTTGCGATTTTTTTTTGTATGACGTGCGTAGCTTGC
CTTCCTGGATAGAACCTCCGCCACCACAAGCGTTTGGTGAAAGTGGTCCC
AAGATGAAGGAAACTTTTTCGTCCCATGCTTGTTTGGTACTCGTGAACAC
GTGCACCGGTTACACCGTAAACGAATGCACGACACACCCGCCTTGACGAA
AAAGGTTGTTTCTTAGGATACCCTACAAGCTTCCACGTGTTTGGCGTGTC
TATTTTTTTGTTAGCAAGCATCGACCTAGGCCACAACTCGGTTGACCGTG
CGAGGGCGTCAGTCTTGCCCGCTGCATCGCTGTTGCACCGCTCACTGCTG
TTCACGTTCGCGGCGGGCGAACCCACCCACGCAGCACAAACAGCCGTTGG
AGGGCTCTCACTCATGTTGCCATTTTTGTCCGGTTTGTTTTAACTGTTGA
CACTGCTGGATGACGCCCGCAGGTGTCGGTGACATGGTGATGGCCACTGT
CCGCAAGGGAAAGCCGGAGCTCAGGAAGAAGGGTGAGAAAAAAACAGATG
TAGGCGAAGGTCGCACACTCAAACCAAGCGGTATACAGCAGCGCCGGTGT
GCATTGGTGGTGTCGTCAGCTTACAGTAGGTAATCAGTGTTTCCGTAGGT
GTGCTCCGCATTTGTTGTTTGTTGCGTACGTCTCCGCTGCCTCCCCTTTC
GCTGATTGGCGCGGTTGAACGGCAGAAAACAGAAGCGCCCCTGCTCCCCC
TTCCTCTAACGGGGCAATGATGTCGTTTGGCTGCCCCCAATTCTCGTCAA
TCTCCCCTCCCACCTACAGTGATGCCTGCCGTTGTGGTGAGGCAGCGCAA
GGCCTGGAGGCGGAAGGACGGTGTGTTCATCTACTTCGAGGACAATGGCG
GCGTTATTGTCAACAACAAGGGAGAGATGAAGGGTGAGCTTGGCGTCTTT
TTCGTCAGACGGCAGCAAGGCCGTTTCGCTTCAAGAACGGCCTATTAAGA
CCTTTCCGTTGTGCGGAGACACTATGGAGGTCGTCAGCCCGTTAGAGCGA
TGAAAAAGCAGCAGCAGCAGCCAGCAATAGCAGCAGCGGCTGTGCTTGGG
TTGTTTGGACTCGTTTGGCTTCGTTGCTTCGCCGTTACTGTGGGGTGGGG
GAATGGAATGAAGACAGACTGCCCATTTGCCAAATATAGTCGTGCTCATG
CCGTCGAGGAAATACGCGCCGGGTTTTGTTTTTTCCCGGCTGTGGTTGTA
GACCCTAGTCTTCGATGTACGAGCCTGTGATCTTGAAAGGCGTGTACCTT
TCCTGATTTTTGCCTCCTTTTGGGCCGCTGGTATCGCACTGGGCACAGCG
TCTTCGTGCCTTGCTAGGACCTCAGAGCTGTCTCCAAGCCCCTCCTAATG
AGCGGTATGGACAAGACAAGCTCCGCTCTGAGAACATGGAGCAAGTGCCT
TTTCATTTTGGTCAAAGAGGTTTGGGTTTTTCAGGCGTTACCCCGCATCC
GTCACTCTTACGCTTGCCGCTCGATTCACCGTCACCCCTCTCGTTTGTTG
TGCAGGTTCCGCGATCAACGGCCCCGTGGCTAAGGAGTGCGCCGACCTGT
GGCCCCGTATCGCCAGCAACGCTGGGTCCATCGTCTAAGAGAAGAAATGA
CGCTCGCAAGACCACCCACCTTTGTCGTCGACAAGATGACACCGGTGGCG
GCACACCTCGATGAAAACTGTTCTTATTCCGCTCGCCTGTCTACTGGGTT
GAAGTGCAGACATTGTCCGCGGCTTTGTGTGGAGTTTGAGCCTCTTGAGT
TCCGTTGAGAAGCGCAGATGAGAGAGGCGAGGAAAGGGGGGGGGGAGCTG
CAATTCTGAATTTAACAAGGGTTCAGACAACCTTGTATTTGGTGCCTCCG
GCACAAATGCTGTGCCCATGTTTGATAGCGTGGCGTGCTGGCAATGAAGC
GGCAGCTTTGCTGTAGCTTTGCGGTATGGGTTGTACGAGGCAGAAAGCTT
CCCAAGCGACATGTGTTCGCACGCACTTTGTTCTGCCCTCGTTACGTGCA
ATCGCTACTGTCAAGCTGCGCACAGTCGTTGTCGCGCTGCGCCTCACATT
TAGGTGCGTTGCGCGGTGCGCACGGCACAAGCTGCGTCTTGTCATGTCAT
TACACCACCCGTAAATACCACGATCCACGAACCAACCTGGTTCGAGAAAG
GGCCGTGCGCGACGAGAGACAGCCGGC
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Coding sequence (CDS) from alignment at Scaffold_389:753002..756878-

>EsuBft1111_7a-0001 ID=EsuBft1111_7a-0001|Name=EsuBft1111_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=423bp|location=Sequence derived from alignment at Scaffold_389:753002..756878- (Ectocarpus subulatus male Bft15b)
ATGTCGAAGCGTGGGCGCGCCGGTGCCCAGGGCAACAAGTACCGCATGAC
CCTCGGTTTGCCCGTGGCCGCGGTCATGAACTGCTGCGACAACAGCGGGG
CCAAGAACCTGTACATCATCTCGGTGTGCGGCATCAAGGGTCGCCTGAAC
CGCCTGCCCTCCGCCGGTGTCGGTGACATGGTGATGGCCACTGTCCGCAA
GGGAAAGCCGGAGCTCAGGAAGAAGGTGATGCCTGCCGTTGTGGTGAGGC
AGCGCAAGGCCTGGAGGCGGAAGGACGGTGTGTTCATCTACTTCGAGGAC
AATGGCGGCGTTATTGTCAACAACAAGGGAGAGATGAAGGGTTCCGCGAT
CAACGGCCCCGTGGCTAAGGAGTGCGCCGACCTGTGGCCCCGTATCGCCA
GCAACGCTGGGTCCATCGTCTAA
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