EsuBft1111_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1111_6a-0001
Unique NameEsuBft1111_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_389contigScaffold_389:757081..760338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LGN3
ProteomeIdEsuBft1111_6
Protein domainsSSF54928
Protein domainsIPR000504
Protein domainsIPR012677
Protein domainsPTHR23003
Ownerapollo_admin@sb-roscoff.fr
Noteuncharacterized rna-binding protein os:schizosaccharomyces pombe (strain 972 atcc 24843) gn: pe:3 sv:3 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length613
Evalue5.57e-81
EggNOG OGsKOG0118@1|root,KOG0118@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameEIF4H
KEGG koko:K03258
KEGG Pathwayko03013,ko04150,ko04151,ko05205,map03013,map04150,map04151,map05205
DescriptionRNA binding
COG categoryH
BRITEko00000,ko00001,ko03012,ko03019
Cross References
External references for this mRNA
DatabaseAccession
GO0019904
GO0051028
GO0031323
GO0042382
GO0014902
GO0071013
GO0000380
GO0005730
GO0000166
GO0005622
GO0003333
GO0003677
GO0005515
GO0030182
GO0016020
GO0048523
GO0016363
GO0016043
GO0080090
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1111_6aEsuBft1111_6aEctocarpus subulatus male Bft15bgeneScaffold_389 757081..760338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1111_6a-0001EsuBft1111_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_389 757226..760338 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1111_6a-0001-exonEsuBft1111_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_389 757081..757237 +
EsuBft1111_6a-0001-exonagat-exon-27833Ectocarpus subulatus male Bft15bexonScaffold_389 758605..758814 +
EsuBft1111_6a-0001-exonagat-exon-27834Ectocarpus subulatus male Bft15bexonScaffold_389 759388..759550 +
EsuBft1111_6a-0001-exonagat-exon-27835Ectocarpus subulatus male Bft15bexonScaffold_389 760256..760338 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1111_6a-0001-exonagat-five_prime_utr-673Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_389 757081..757225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1111_6a-0001-cdsEsuBft1111_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_389 757226..757237 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1111_6a-0001 ID=EsuBft1111_6a-0001|Name=EsuBft1111_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=613bp|location=Sequence derived from alignment at Scaffold_389:757081..760338+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCTCACATCGGTTTTGTTTCGCGCGAAGACTCCCACCACCCAAATCGAG
GGCAACAAAGACAGGACCGCAGAAGGAGGGAGACGCGAGCTGTTAAGTTT
GCAAGGAGAGCAGTCTGCACGGGACCGGTTCGTAGAGCTTTCGTCATGGA
GAATGGGATGGGATACGTGGAGCAACCCGCACAGTATGCGCAGGACGCCA
ACGGCATCGTCGTGAACGGCATGGGCGGCGTGATGCCCGTCGTGGGCGGC
ATGTCCGCGCCGCCGGTCGGGGTGATGACGACGGGCATCACCCGCGTGTA
CGTGGGCAACCTCTCCTGGGAGACCGAGTGGCAAGATCTCAAGGACCACA
TGAGGACCGCCGGCGAGGTCGTCCGAGCGGACGTGATGAGAGACGCGTCC
GGCCGGTCCAAAGGCTGCGGCATCGTGGAGTACCGCACCCCGGCGGAGGC
GCAGGAGGCCATCAACACCCTCCTCGACACCGAGCTTAAGGGGCGCCTGA
TCTTCGTCAGGGAGGACCGTGAGGCCGCAGGTGGCGGCGGGGGGGGGAAC
AACCAACACCGCGGAGCCCCTTCCGGCGGCGGGGGCGGGGGCGGCGGCCC
GCCCATGGGNNNN
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protein sequence of EsuBft1111_6a-0001

>EsuBft1111_6 ID=EsuBft1111_6|Name=EsuBft1111_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=156bp
MENGMGYVEQPAQYAQDANGIVVNGMGGVMPVVGGMSAPPVGVMTTGITR
VYVGNLSWETEWQDLKDHMRTAGEVVRADVMRDASGRSKGCGIVEYRTPA
EAQEAINTLLDTELKGRLIFVREDREAAGGGGGGNNQHRGAPSGGGGGGG
GPPMGX
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mRNA from alignment at Scaffold_389:757081..760338+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1111_6a-0001 ID=EsuBft1111_6a-0001|Name=EsuBft1111_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3258bp|location=Sequence derived from alignment at Scaffold_389:757081..760338+ (Ectocarpus subulatus male Bft15b)
CCCTCACATCGGTTTTGTTTCGCGCGAAGACTCCCACCACCCAAATCGAG
GGCAACAAAGACAGGACCGCAGAAGGAGGGAGACGCGAGCTGTTAAGTTT
GCAAGGAGAGCAGTCTGCACGGGACCGGTTCGTAGAGCTTTCGTCATGGA
GAATGGGGTGAGAGGAGACACAAAGGAGGTTGGTTGGGGCTGTTTTTTTT
TTGGTTGAATTTTGTGTGTGTCGAGCCTGTTGGCCGTTTTCCACCTTACG
TTTCTTTCTTTCTGTCTTCCCGTGCCGTGAGGGTCGCGGTCGGCTTAGGG
GGCGCTCTGCAGGTCGGGTACACGGCACGTAGCCTCCTCTGCCAGGCGGA
GAGTTTTGGGCCCTGAGGAGGATATCCACCAGGTGGTTGTGCTCGTGCTC
GGTCTCTCCACGTGTCCTGTAGGTAGTGTAGATCTTGGACAGCGTGGACG
CTCCAGAAGTTGAATCCGAAATATGTCCTCTTTGCGTTTCATTTCAATGG
GCAAGCTGCTGGCGGATTCGTCCCCACAGATCCAGCTACAAGGCATGTGT
GGGTGTTTTCGGACAAGGTGCGGCGCGCTTTTGTTTTTGTCGCTGCACAC
GGGCTGAGCCTGCCTTGCATAAGCAACATGATCATAGCAGCACGGTCGAT
TCCACCCCACGACATGGATGCAGCGGAAGCTCTACTGGCTTCCAAGTTGG
GTTGCTTCCTCGACCCCCAATATTAGCGCACCGTATAGTAAAAAGCGCCA
GGAGTCACGTCCTAAAATTCCAACAAATGTTGAGTCCTCATCGCGCACCA
AGAGTGTGTTGGTCGCACAGCTGGCCGGACACATGTAGCGCGAGTCACAC
ACCTAACTGCTGGCCCCGCCCCCCTGCTTTTGTCAATCAGCAGTTGCTTT
AATGACCTGTTGCACCATATTGGGTGTGTCTCAATGTGTGAGTTGCCTCT
GATGTGTGTGGTCGTGTGGAAAGGAAAGAAGATTCAAGCTTGGGTGATAC
TCTTGTCAACATCGGAAGGAGTGTACTTTAACCTAAAGCTCGACTCACAT
AATTCCGTCCAGACAGCTGACGGGTTGGGTGGGTTGGGTGGGTTGTTGAT
GGCGCGGAAAACGTCAGCTCAACAAATGTTGTTGGCTCCTTGGGTCCCCG
CCGAACGACAGCGGCACCGTCGACACGCAACATCTCTCCTCATCTTTTTT
TACTTTTCGACCGTAGTGCCGGGCGCGACGTCTTCGTCGTTCATGTTCCC
GCACTTTCCATGTTCTCTTCGCCCCCCCGCCCTCCCCGTCATGCAAAACA
TGCAACGTGGTCTGGTATGTGGTCCTCCTTTGGTTGTGCGGCTGTCGTTG
CAGTCTTCACATGAATAAGCCGTTCCAATCTCCCTGCCCACAGTACCTCC
CATCATCCTTAGTCTACAACAGTGACAATCAATGCAGCTTCTATCGACGG
GTGTTTTTCTGAAAACATGCGCCTCTTCCTGTTGCTGCTGTTTTTCTTTC
TCGTGGGTGTGCCGACGAAAAAAGATGGGATACGTGGAGCAACCCGCACA
GTATGCGCAGGACGCCAACGGCATCGTCGTGAACGGCATGGGCGGCGTGA
TGCCCGTCGTGGGCGGCATGTCCGCGCCGCCGGTCGGGGTGATGACGACG
GGCATCACCCGCGTGTACGTGGGCAACCTCTCCTGGGAGACCGAGTGGCA
AGATCTCAAGGACCACATGAGGACCGCCGGCGAGGTACGCCAGGTCTTGC
TGCCACCCGCCACAAGTAGCGTGTGAAGACTTCAACACATCCTTCCACTA
CTGCTGTGGTAAAAAGTAGAGTGGTAGACTGTGGGTTTCATTGTTTAGGA
AAAATATGCATATGATACAAACAAGGCTACCCGTTCGAGAGACTGTCGAT
TTCTCTTGAAATGCGGCGGAAACTGAGTTATCTCGTGACTGTGGGCATGT
CGCGTTGACGGTCGTCGCGGAGAATATAGACGGCTGAACCCTTACAGTAC
CTCGAAAAAACACGCACGAGGAAAGACGAGGCTTGAGTAAAGTATAAAAC
TAAATTCAACCTGTGTGACCCCGGCCGATGCGTCGAACACTTGCATACAC
GTCCGGCAGGTTGTGTAGACTGGCTCTAACACACACATGACGGCATCCGT
GTCCCATGCATGTCGACGATGCCTGTGTTTTTTTTCCTCTTGGCTGCTTC
TGTACGTATACGCGCAACACACAGACGGGTACCCATGTCGATCCCTGTGT
CACTCCTTCCCCCGACCGCTGTGTGCGGCGGTGTGTAAACACTCTTTTCT
ACGTCAGGTCGTCCGAGCGGACGTGATGAGAGACGCGTCCGGCCGGTCCA
AAGGCTGCGGCATCGTGGAGTACCGCACCCCGGCGGAGGCGCAGGAGGCC
ATCAACACCCTCCTCGACACCGAGCTTAAGGGGCGCCTGATCTTCGTCAG
GGAGGACCGTGAGGCCGCAGGTATATCCATCCGACACAATGCCTCCTGCC
GACACCATGTGGTGGCAGCCTGTGGCGCCATCGTCGTGATGTGTTGTATC
TTTTCCGATTCGATGCGAAAAAAAAGGTACAGCAGTGGAGGGGGGGCGGG
GTGTGCCCCGAGATTTGACCGGCACTATACCGGGCACCGGCGCTATTCAA
ATTCAAAGTACAGAACGACTTGGTATTCCAGTGTGTGCGAGCCGAAAACA
CCGGCACTATAGAGGGCCCCACACTGTGATACATGTATCGTGTTGTAACG
ACTTTTGACCCAAAAACCGTGGTCATGTTGGAAGGACAGCATAGCGACTC
CGGTCACCACCGGACGAGTGTTTTTCCTTGTTTGCTTCGATCGAAACATG
GCTCACTCGTTCATGGTGGTAGATGCGCGGTGGGATGAAAGTGGCATGCT
GGTTGGTGCTCGGAAATCGCTAAATACAACGCGCATTTGATGGGTGGAAA
AAAACGAGGCATGTTGTTTGGTGTCGGAGATTGCCATACGACGCGTATCG
CACGATGGTGGGTAAAAAACAACCAACAAAGAAACTTGCAACAAACCGAG
CGACCTGTATCCATGCGTACCAGTGTTGTTGGTTGCCCGAGGAGTTAGGG
TTGACCTATCATCACGAGCACGAACTTCTTCATCATGACGACGTCCGCAT
TCCTTTCGTACTCGTGCACCGTCAGGTGGCGGCGGGGGGGGGAACAACCA
ACACCGCGGAGCCCCTTCCGGCGGCGGGGGCGGGGGCGGCGGCCCGCCCA
TGGGNNNN
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Coding sequence (CDS) from alignment at Scaffold_389:757081..760338+

>EsuBft1111_6a-0001 ID=EsuBft1111_6a-0001|Name=EsuBft1111_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=468bp|location=Sequence derived from alignment at Scaffold_389:757081..760338+ (Ectocarpus subulatus male Bft15b)
ATGGAGAATGGGATGGGATACGTGGAGCAACCCGCACAGTATGCGCAGGA
CGCCAACGGCATCGTCGTGAACGGCATGGGCGGCGTGATGCCCGTCGTGG
GCGGCATGTCCGCGCCGCCGGTCGGGGTGATGACGACGGGCATCACCCGC
GTGTACGTGGGCAACCTCTCCTGGGAGACCGAGTGGCAAGATCTCAAGGA
CCACATGAGGACCGCCGGCGAGGTCGTCCGAGCGGACGTGATGAGAGACG
CGTCCGGCCGGTCCAAAGGCTGCGGCATCGTGGAGTACCGCACCCCGGCG
GAGGCGCAGGAGGCCATCAACACCCTCCTCGACACCGAGCTTAAGGGGCG
CCTGATCTTCGTCAGGGAGGACCGTGAGGCCGCAGGTGGCGGCGGGGGGG
GGAACAACCAACACCGCGGAGCCCCTTCCGGCGGCGGGGGCGGGGGCGGC
GGCCCGCCCATGGGNNNN
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