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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D8LGN2 |
| ProteomeId | EsuBft1111_4 |
| Protein domains | PTHR10422 |
| Protein domains | IPR000883 |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SignalP-noTM |
| Protein domains | IPR023616 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | TRANSMEMBRANE |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | cytoScaffold_ome c oxidase subunit 1 os:Scaffold_ysomela knabi gn:coi pe:3 sv:2 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 2514 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 2.43e-119 |
| EggNOG OGs | COG5059@1|root,KOG4280@2759|Eukaryota |
| Date last modified | 2018-04-03 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K10399 |
| Description | microtubule motor activity |
| COG category | Z |
| BRITE | ko00000,ko04812 |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0009060 |
| GO | 0070469 |
| GO | 0006119 |
| GO | 0005743 |
| GO | 0020037 |
| GO | 0022900 |
| GO | 0055085 |
| GO | 0004129 |
| GO | 0005506 |
| GO | 0005507 |
| GO | 1902600 |
| EC | 1.9.3.1 |
| GO | 0016021 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1111_4a-0001 ID=EsuBft1111_4a-0001|Name=EsuBft1111_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2514bp|location=Sequence derived from alignment at Scaffold_389:768814..771932- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGCTTTCCCTCGTATGAATGTTCTTGGTTCTTGGCTACTGCCGCCTTC TTTTGTTCTTCTTTTAGCCTCTTCTTTTGTAGAATCAGGGGCAGGTACAG GGTGGACAGTTTTTCCTCCATTAGGTGAGATTCAAGCTCATTCAGGCCAT TCTGTTGACTTAGCTATATTCAGTCTTCACTTATCAGGTGCAGCTTCTAT TTTAGGGGCTATAAAGTTTATTACAACTATTTTTAATATTCGTGCTCCTT GTATGGCTATGGACCGAGTACCTCTTTTTGTAGAGGCAGACCTAAACGGC GCGAGTGACGGGGTTCAACACCAACACCCACCACCAGGTTGCGCCCAGCC CCCCTTGGCGGCGTCGGCAGCAGATAAGAGAGAACGGCAAGAAGAGTCGC GCGCCGAGATGGTAGCGGGAGTCGGCACGGGGGGTGCGGAGACCACCCCG GCGACGGCAGCGGGAGACCTGGGGCAGGAAGTGATGCACCTGCGCAGGGT GAACGAGGCCCTGGTGGAACGGGTAGAATTCTTCGAACGGGTTCAGCTGA AGTCACCGGTGCGACGATACGTGTTGCGAGGGGGGGTTGGTACTCATGTT TTTCATGCATTTGTTGTGAAGACCGCCCTCGAGAGGACGGAGTCGGGGAG TGGGTATGGGGTTCACTCCGTTGTTCTTGCTGGGTTGCCCTTGATCAGTC GGTTTTTCGCGTCGTCGACCGCCCAACTTGTCCGAGGCGGATCGCTGTTG CTGCCTTCTCCCAGGAGAGGCGCCGCCATCACCCGGCCGCTTTGCAATCA CGTTTCTGCGGTACCGTGGGCGGAATCAAGCGCCTCTGGGCCGATTGAGG GCAGCCAGAAGGACGTGCGTCCGGAGGAGGACGGGTGGGGGGAGAGGGGG GGCACGGTTGCGCACGGCTTTCCCAGCATATGCTTTGTAACGACGGTTGA TCTCGATCCTAACCCCCGAGAGTTCATGCTCTGGCATGAGGGGAGCGAGC GGCCCACAGGTCGAAGGCCTCACAATATGGGAGAGGGAAGGGGAGGGGGG GGGGGCGGAGGCGCGGGCCGGGGAGCAACTCTCGGCAACAGCTCCGCCAG AATAGCAAGGCCGGCGGTGTCGACGGCGGCATCGCGACCGACGCCTGATA CAAGCGCCAACACGACGACGGTAAAACCCGCCGCGGGGTCAGCCCCGGCG AAGAGCCCGAGGACTGCCAAAGCAACGAGGGCTACGCCAGATGGCGAGAC GGCGGCGACCAAGAGAACCCGTGACGACGGCGGTAGCTCCACAGCGACGC GGACGAAAGCCACGCCCGCCGCCGCCGCGACTGGAGAGGCACCGGTTGCA ACGGCCGCGCAGGGCCGGCCAGCGCCGGCAGCACCGGCCGCCATATCGAA CTCGCTCCCCGTCAGAAAGCATAGCAGACAACGGGATGCGCAGGGACGGA TTCTCTTGCGAGGGGACAAAGGTTACGATCCCCTGGTGGTGGCACCGATG GCGGCCGCTCCGCCACCGGGGAAACCAAATCGCGGCGGCGCCAGCAGCGC AAGGCTGCCGAGGGAAGTGGGGAGGGCCGGCGGCGGGAGGGGGGCCGGTG GCCGCGCGACCGTTCGCGACAAGGGCATGGTAGGTCAGACCACGGAGTTT GGTGAGCCGGGTAGAGTGAGTCGCCTTCCCCGCGACTCACTTGGCGAGAC GTCAGCATCGGCAGCGGTGGGAGAGCCGCAGCTGAGAGTCGAAGATTCAC TCTCCATAGCAGCAGCAGCAGCAGTAGCAGCAGCAACAGGAGAAGCCGTA GAAGGAGCAGAAGACGGAAGGGCGGGAATGCGGCCGGTTGGGGGTGGCCA CGGCAACGACAGCGACGACGACGACGACGATCAAAAGCACGGGAGGGATG GTAGTGAAGAAAGCGGTGCTCGCGGTGAGGGACGAAGCGGGGTCGAGCAC AGTGATAAGACTACACAACAAGCGAATAGCGGGGAAGATGGCGAGGCTAG CCAGACGGAAGCAGGTTCAACAGAAAAAAGCCCGGCCGAAGACCAGAAAC GGGCTTCTGCGAGTAGTGCTTCCTTCCTCAATCCAACAGCGGCAGGCATG GTGGCGCCACCTGAGGCAGAAAACGGGGACGAGGGTGGGGACAAGGGCTT GCCATCTCCTGGTCGACAGCAACATAGTTGGGACTCGCTCACATGGCCCG ACCAAGAAAAAGCTCGGCAGAAATTGGTTCACGCGAAACGGGGCCGGAAA GGCGACGGCGGTGGCGGCGGCGGCGATACCAACGGTAGTAGGGCCCCCGA TGCAAGCGACCGCTCCGATTCTTCTGCCGTTGCGAGTGACAAAGTTTGGG AGCCCGGGAAGAACCCCTCGAAGTCAAGATCGAAATCGACCCGGCTGATG AGAAGGGAGTCGACGTCGGAGAGTGCTTCTGTTGTTGCCGCGGGTAGCAG TTGAAGGAAGAAGGCGGCAAGTTTTTTCAAGAGAAGCAAGAAAAAATTGT TTTTTTTTACGGTC back to topprotein sequence of EsuBft1111_4a-0001 >EsuBft1111_4 ID=EsuBft1111_4|Name=EsuBft1111_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=817bp
MAFPRMNVLGSWLLPPSFVLLLASSFVESGAGTGWTVFPPLGEIQAHSGH SVDLAIFSLHLSGAASILGAIKFITTIFNIRAPCMAMDRVPLFVEADLNG ASDGVQHQHPPPGCAQPPLAASAADKRERQEESRAEMVAGVGTGGAETTP ATAAGDLGQEVMHLRRVNEALVERVEFFERVQLKSPVRRYVLRGGVGTHV FHAFVVKTALERTESGSGYGVHSVVLAGLPLISRFFASSTAQLVRGGSLL LPSPRRGAAITRPLCNHVSAVPWAESSASGPIEGSQKDVRPEEDGWGERG GTVAHGFPSICFVTTVDLDPNPREFMLWHEGSERPTGRRPHNMGEGRGGG GGGGAGRGATLGNSSARIARPAVSTAASRPTPDTSANTTTVKPAAGSAPA KSPRTAKATRATPDGETAATKRTRDDGGSSTATRTKATPAAAATGEAPVA TAAQGRPAPAAPAAISNSLPVRKHSRQRDAQGRILLRGDKGYDPLVVAPM AAAPPPGKPNRGGASSARLPREVGRAGGGRGAGGRATVRDKGMVGQTTEF GEPGRVSRLPRDSLGETSASAAVGEPQLRVEDSLSIAAAAAVAAATGEAV EGAEDGRAGMRPVGGGHGNDSDDDDDDQKHGRDGSEESGARGEGRSGVEH SDKTTQQANSGEDGEASQTEAGSTEKSPAEDQKRASASSASFLNPTAAGM VAPPEAENGDEGGDKGLPSPGRQQHSWDSLTWPDQEKARQKLVHAKRGRK GDGGGGGGDTNGSRAPDASDRSDSSAVASDKVWEPGKNPSKSRSKSTRLM RRESTSESASVVAAGSS back to topmRNA from alignment at Scaffold_389:768814..771932- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1111_4a-0001 ID=EsuBft1111_4a-0001|Name=EsuBft1111_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3119bp|location=Sequence derived from alignment at Scaffold_389:768814..771932- (Ectocarpus subulatus male Bft15b) ATGGCTTTCCCTCGTATGAATGTTCTTGGTTCTTGGCTACTGCCGCCTTC
TTTTGTTCTTCTTTTAGCCTCTTCTTTTGTAGAATCAGGGGCAGGTACAG
GGTGGACAGTTTTTCCTCCATTAGGTGAGATTCAAGCTCATTCAGGCCAT
TCTGTTGACTTAGCTATATTCAGTCTTCACTTATCAGGTGCAGCTTCTAT
TTTAGGGGCTATAAAGTTTATTACAACTATTTTTAATATTCGTGCTCCTT
GTATGGCTATGGACCGAGTACCTCTTTTTGTAGGTGATCCAGGAAAAAAG
CAGCAGGGCCACAAAAAAGCAAAGGGGAGGAGGCCATACGTAGGCCACAC
TGAATGATTTTGGCGAGATATGCTGATCTAGTCTCGCTTGTGGATGTACC
TTGCGTACTTCTTCTTTTCCACCCCCTCCTTCCTGCCTCCTTTCTCCACG
ATGATCGCAAACAACTACCAACTTCCTCCACCAAAACCCAGGCACCATTC
TCGACACCAACAACAACAGAGGCAGACCTAAACGGCGCGAGTGACGGGGT
TCAACACCAACACCCACCACCAGGTTGCGCCCAGCCCCCCTTGGCGGCGT
CGGCAGCAGATAAGAGAGAACGGCAAGAAGAGTCGCGCGCCGAGATGGTA
GCGGGAGTCGGCACGGGGGGTGCGGAGACCACCCCGGCGACGGCAGCGGG
AGACCTGGGGCAGGAAGTGATGCACCTGCGCAGGGTGAACGAGGCCCTGG
TGGAACGGGTAGAATTCTTCGAACGGGTTCAGCTGAAGTCACCGGTGCGA
CGATACGTGTTGCGAGGGGGGGTTGGTACTCATGTTTTTCATGCATTTGT
TGTGAAGACCGCCCTCGAGAGGACGGAGTCGGGGAGTGGGTATGGGGTTC
ACTCCGTTGTTCTTGCTGGGTTGCCCTTGATCAGTCGGTTTTTCGCGTCG
TCGACCGCCCAACTTGTCCGAGGCGGATCGCTGTTGCTGCCTTCTCCCAG
GAGAGGCGCCGCCATCACCCGGCCGCTTTGCAATCACGTTTCTGCGGTAC
CGTGGGCGGAATCAAGCGCCTCTGGGCCGATTGAGGGCAGCCAGAAGGAC
GTGCGTCCGGAGGAGGACGGGTGGGGGGAGAGGGGGGGCACGGTTGCGCA
CGGCTTTCCCAGCATATGCTTTGTAACGACGGTTGATCTCGATCCTAACC
CCCGAGAGTTCATGCTCTGGCATGAGGGGAGCGAGCGGCCCACAGGTCAA
AGCATTGTTCATACTTACTTAAGAAGCCTTCCTGCAATGCCGACCACCCT
ACACACTTCTTTCCCGAGTCCCGCAGTCTCCGCACACCGTTCTTTGACGA
CGCCTTGCTTCATTCGTCCAACCAACACCACGCAGAACGACCGGGGGAGC
GGCGGCGGCGGGAGGGGTGTACGCGGAGGAGTGGCAGGTCGAAGGCCTCA
CAATATGGGAGAGGGAAGGGGAGGGGGGGGGGGGGGGGGCGCNAGTCCCG
CAGTCTCCGCACACCGTTCTTTGACGACGCCTTGCTTCATTCGTCCAACC
AACACCACGCAGAACGACCGGGGGAGCGGCGGCGGCGGGAGGGGTGTACG
CGGAGGAGTGGCAGGTCGAAGGCCTCACAATATGGGAGAGGGAAGGGGAG
GGGGGGGGGGCGGAGGCGCGGGCCGGGGAGCAACTCTCGGCAACAGCTCC
GCCAGAATAGCAAGGCCGGCGGTGTCGACGGCGGCATCGCGACCGACGCC
TGATACAAGCGCCAACACGACGACGGTAAAACCCGCCGCGGGGTCAGCCC
CGGCGAAGAGCCCGAGGACTGCCAAAGCAACGAGGGCTACGCCAGATGGC
GAGACGGCGGCGACCAAGAGAACCCGTGACGACGGCGGTAGCTCCACAGC
GACGCGGACGAAAGCCACGCCCGCCGCCGCCGCGACTGGAGAGGCACCGG
TTGCAACGGCCGCGCAGGGCCGGCCAGCGCCGGCAGCACCGGCCGCCATA
TCGAACTCGCTCCCCGTCAGAAAGCATAGCAGACAACGGGATGCGCAGGG
ACGGATTCTCTTGCGAGGGGACAAAGGTTACGATCCCCTGGTGGTGGCAC
CGATGGCGGCCGCTCCGCCACCGGGGAAACCAAATCGCGGCGGCGCCAGC
AGCGCAAGGCTGCCGAGGGAAGTGGGGAGGGCCGGCGGCGGGAGGGGGGC
CGGTGGCCGCGCGACCGTTCGCGACAAGGGCATGGTAGGTCAGACCACGG
AGTTTGGTGAGCCGGGTAGAGTGAGTCGCCTTCCCCGCGACTCACTTGGC
GAGACGTCAGCATCGGCAGCGGTGGGAGAGCCGCAGCTGAGAGTCGAAGA
TTCACTCTCCATAGCAGCAGCAGCAGCAGTAGCAGCAGCAACAGGAGAAG
CCGTAGAAGGAGCAGAAGACGGAAGGGCGGGAATGCGGCCGGTTGGGGGT
GGCCACGGCAACGACAGCGACGACGACGACGACGATCAAAAGCACGGGAG
GGATGGTAGTGAAGAAAGCGGTGCTCGCGGTGAGGGACGAAGCGGGGTCG
AGCACAGTGATAAGACTACACAACAAGCGAATAGCGGGGAAGATGGCGAG
GCTAGCCAGACGGAAGCAGGTTCAACAGAAAAAAGCCCGGCCGAAGACCA
GAAACGGGCTTCTGCGAGTAGTGCTTCCTTCCTCAATCCAACAGCGGCAG
GCATGGTGGCGCCACCTGAGGCAGAAAACGGGGACGAGGGTGGGGACAAG
GGCTTGCCATCTCCTGGTCGACAGCAACATAGTTGGGACTCGCTCACATG
GCCCGACCAAGAAAAAGCTCGGCAGAAATTGGTTCACGCGAAACGGGGCC
GGAAAGGCGACGGCGGTGGCGGCGGCGGCGATACCAACGGTAGTAGGGCC
CCCGATGCAAGCGACCGCTCCGATTCTTCTGCCGTTGCGAGTGACAAAGT
TTGGGAGCCCGGGAAGAACCCCTCGAAGTCAAGATCGAAATCGACCCGGC
TGATGAGAAGGGAGTCGACGTCGGAGAGTGCTTCTGTTGTTGCCGCGGGT
AGCAGTTGAAGGAAGAAGGCGGCAAGTTTTTTCAAGAGAAGCAAGAAAAA
ATTGTTTTTTTTTACGGTC back to topCoding sequence (CDS) from alignment at Scaffold_389:768814..771932- >EsuBft1111_4a-0001 ID=EsuBft1111_4a-0001|Name=EsuBft1111_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2454bp|location=Sequence derived from alignment at Scaffold_389:768814..771932- (Ectocarpus subulatus male Bft15b) ATGGCTTTCCCTCGTATGAATGTTCTTGGTTCTTGGCTACTGCCGCCTTC TTTTGTTCTTCTTTTAGCCTCTTCTTTTGTAGAATCAGGGGCAGGTACAG GGTGGACAGTTTTTCCTCCATTAGGTGAGATTCAAGCTCATTCAGGCCAT TCTGTTGACTTAGCTATATTCAGTCTTCACTTATCAGGTGCAGCTTCTAT TTTAGGGGCTATAAAGTTTATTACAACTATTTTTAATATTCGTGCTCCTT GTATGGCTATGGACCGAGTACCTCTTTTTGTAGAGGCAGACCTAAACGGC GCGAGTGACGGGGTTCAACACCAACACCCACCACCAGGTTGCGCCCAGCC CCCCTTGGCGGCGTCGGCAGCAGATAAGAGAGAACGGCAAGAAGAGTCGC GCGCCGAGATGGTAGCGGGAGTCGGCACGGGGGGTGCGGAGACCACCCCG GCGACGGCAGCGGGAGACCTGGGGCAGGAAGTGATGCACCTGCGCAGGGT GAACGAGGCCCTGGTGGAACGGGTAGAATTCTTCGAACGGGTTCAGCTGA AGTCACCGGTGCGACGATACGTGTTGCGAGGGGGGGTTGGTACTCATGTT TTTCATGCATTTGTTGTGAAGACCGCCCTCGAGAGGACGGAGTCGGGGAG TGGGTATGGGGTTCACTCCGTTGTTCTTGCTGGGTTGCCCTTGATCAGTC GGTTTTTCGCGTCGTCGACCGCCCAACTTGTCCGAGGCGGATCGCTGTTG CTGCCTTCTCCCAGGAGAGGCGCCGCCATCACCCGGCCGCTTTGCAATCA CGTTTCTGCGGTACCGTGGGCGGAATCAAGCGCCTCTGGGCCGATTGAGG GCAGCCAGAAGGACGTGCGTCCGGAGGAGGACGGGTGGGGGGAGAGGGGG GGCACGGTTGCGCACGGCTTTCCCAGCATATGCTTTGTAACGACGGTTGA TCTCGATCCTAACCCCCGAGAGTTCATGCTCTGGCATGAGGGGAGCGAGC GGCCCACAGGTCGAAGGCCTCACAATATGGGAGAGGGAAGGGGAGGGGGG GGGGGCGGAGGCGCGGGCCGGGGAGCAACTCTCGGCAACAGCTCCGCCAG AATAGCAAGGCCGGCGGTGTCGACGGCGGCATCGCGACCGACGCCTGATA CAAGCGCCAACACGACGACGGTAAAACCCGCCGCGGGGTCAGCCCCGGCG AAGAGCCCGAGGACTGCCAAAGCAACGAGGGCTACGCCAGATGGCGAGAC GGCGGCGACCAAGAGAACCCGTGACGACGGCGGTAGCTCCACAGCGACGC GGACGAAAGCCACGCCCGCCGCCGCCGCGACTGGAGAGGCACCGGTTGCA ACGGCCGCGCAGGGCCGGCCAGCGCCGGCAGCACCGGCCGCCATATCGAA CTCGCTCCCCGTCAGAAAGCATAGCAGACAACGGGATGCGCAGGGACGGA TTCTCTTGCGAGGGGACAAAGGTTACGATCCCCTGGTGGTGGCACCGATG GCGGCCGCTCCGCCACCGGGGAAACCAAATCGCGGCGGCGCCAGCAGCGC AAGGCTGCCGAGGGAAGTGGGGAGGGCCGGCGGCGGGAGGGGGGCCGGTG GCCGCGCGACCGTTCGCGACAAGGGCATGGTAGGTCAGACCACGGAGTTT GGTGAGCCGGGTAGAGTGAGTCGCCTTCCCCGCGACTCACTTGGCGAGAC GTCAGCATCGGCAGCGGTGGGAGAGCCGCAGCTGAGAGTCGAAGATTCAC TCTCCATAGCAGCAGCAGCAGCAGTAGCAGCAGCAACAGGAGAAGCCGTA GAAGGAGCAGAAGACGGAAGGGCGGGAATGCGGCCGGTTGGGGGTGGCCA CGGCAACGACAGCGACGACGACGACGACGATCAAAAGCACGGGAGGGATG GTAGTGAAGAAAGCGGTGCTCGCGGTGAGGGACGAAGCGGGGTCGAGCAC AGTGATAAGACTACACAACAAGCGAATAGCGGGGAAGATGGCGAGGCTAG CCAGACGGAAGCAGGTTCAACAGAAAAAAGCCCGGCCGAAGACCAGAAAC GGGCTTCTGCGAGTAGTGCTTCCTTCCTCAATCCAACAGCGGCAGGCATG GTGGCGCCACCTGAGGCAGAAAACGGGGACGAGGGTGGGGACAAGGGCTT GCCATCTCCTGGTCGACAGCAACATAGTTGGGACTCGCTCACATGGCCCG ACCAAGAAAAAGCTCGGCAGAAATTGGTTCACGCGAAACGGGGCCGGAAA GGCGACGGCGGTGGCGGCGGCGGCGATACCAACGGTAGTAGGGCCCCCGA TGCAAGCGACCGCTCCGATTCTTCTGCCGTTGCGAGTGACAAAGTTTGGG AGCCCGGGAAGAACCCCTCGAAGTCAAGATCGAAATCGACCCGGCTGATG AGAAGGGAGTCGACGTCGGAGAGTGCTTCTGTTGTTGCCGCGGGTAGCAG TTGA back to top
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