EsuBft1110_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1110_8a-0001
Unique NameEsuBft1110_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_518contigScaffold_518:109518..111396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FSA5
ProteomeIdEsuBft1110_8
Protein domainsPTHR23140
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length51
Evalue5.63e-50
EggNOG OGsKOG0151@1|root,KOG0151@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameU2SURP
KEGG koko:K02878,ko:K12842
KEGG Pathwayko03010,ko03040,map03010,map03040
KEGG ModuleM00178
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005685,GO:0005686,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0017069,GO:0030532,GO:0030619,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0035613,GO:0035614,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1990904
DescriptionU2 snRNP-associated SURP
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1110_8aEsuBft1110_8aEctocarpus subulatus male Bft15bgeneScaffold_518 109518..111396 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1110_8a-0001-exonagat-exon-9489Ectocarpus subulatus male Bft15bexonScaffold_518 109518..109673 -
EsuBft1110_8a-0001-exonEsuBft1110_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_518 111041..111396 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1110_8a-0001-cdsEsuBft1110_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_518 109518..109673 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1110_8a-0001-exonagat-five_prime_utr-668Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_518 111176..111396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1110_8a-0001EsuBft1110_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_518 109518..111175 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1110_8a-0001 ID=EsuBft1110_8a-0001|Name=EsuBft1110_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=512bp|location=Sequence derived from alignment at Scaffold_518:109518..111396- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCGCTCGGTGTGTGCCTACGGATAGTACGGAATAGAGCAGACAGGAGGA
AACGGGAGGGACTTTTATTCCCTTGTGGTCACGACCCTTCCGATACCGCC
CGGACAAGGCAACGTCAAGAGAGACTCAGCTTCAGCACGTGGAGGACAGA
CAGGATCAACCTCATTCAGGTGTGGTGTCTATTTAGCAGGAGGGGCGTAG
ACGGGGGTCACAGCACCGAGGATGGCGGATCCAGGGAAGAGGATGCCGTG
GGGCATGAAGATCGGCGGGCTCAAGCCGGGGGCGAAGGAGACCATCACGG
ACAAGAAGCTCAAGGCCTTCGTCGTCGGCAAGCAGAAGAAGAGCAGGTTG
CAAAAGGAGAGAGAGGTAAAGGAGGAGAAGAAGAAGGAGGCGGACGTAGA
AGCAGCCAAGATCTACGAGCAGTTCGTGCAGTCTTTCGACGGCGGGGGGC
CCGACGACGGGAAGACTTTTCTCAGAGGGGGCGTCGCTGGAGGCAGGGGG
GGGGGGGGNNNN
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protein sequence of EsuBft1110_8a-0001

>EsuBft1110_8 ID=EsuBft1110_8|Name=EsuBft1110_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=97bp
MADPGKRMPWGMKIGGLKPGAKETITDKKLKAFVVGKQKKSRLQKEREVK
EEKKKEADVEAAKIYEQFVQSFDGGGPDDGKTFLRGGVAGGRGGGGX
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mRNA from alignment at Scaffold_518:109518..111396-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1110_8a-0001 ID=EsuBft1110_8a-0001|Name=EsuBft1110_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1879bp|location=Sequence derived from alignment at Scaffold_518:109518..111396- (Ectocarpus subulatus male Bft15b)
CCCGCTCGGTGTGTGCCTACGGATAGTACGGAATAGAGCAGACAGGAGGA
AACGGGAGGGACTTTTATTCCCTTGTGGTCACGACCCTTCCGATACCGCC
CGGACAAGGCAACGTCAAGAGAGACTCAGCTTCAGCACGTGGAGGACAGA
CAGGATCAACCTCATTCAGGTGTGGTGTCTATTTAGCAGGAGGGGCGTAG
ACGGGGGTCACAGCACCGAGGATGGCGGATCCAGGGAAGAGGATGCCGTG
GGGCATGAAGATCGGCGGGCTCAAGCCGGGGGCGAAGGAGACCATCACGG
ACAAGAAGCTCAAGGCCTTCGTCGTCGGCAAGCAGAAGAAGAGCAGGTTG
CAAAAGGTGTGTGCGACCCATCCCAACCTGCAAAGCGAAGGGGGTGATAT
TCAACGATATTCGTTTTGACTTGCTTGATTCTACACACAAGAAAAATGCA
GCCAGCTATTTTATCTGCTGTCTGCCCTGCTTCGACAGCATGCATCCCTT
TTGTGCAAAATCCCTTTCTCACTGGTGCATTGCTATGACTGCTTCGACAA
TGTGTCTTACGCAATGATGTGCAGTATGGTAAAATCCACTGGTGACCGTC
GTGTTCAAACTATTTGCTGCAATTACCTGCACATACCACATTTACTCAAC
GCCGGAAGACTTGGGTCGGATGTAACAATAGCAGTGTTCAGCGACGCCCT
CCGGCCTGATGAACCACAAGAAGCACGCACGTGACCTCTCCCAGCTTTCG
CAGCCACAAGCCCGCGGGTTACCCAGCAGTGTTCAATTCATGTCTTGTGG
ACACCTCGTGAATGCAAGTAGTCTAGACTTGGAGAAGCACGACATCCCGA
CTAAAACAGTCTTGCATATGAAGGAAAGGGATTATGATACCTGATGTCTC
TCGCTGGAAATTGTCAAGGCAAGCACGGTAGAAATAATGATGGAGATTTC
CCTCTGTGTGACTACGGGCTATTTTTGTGTGTCAAGAAGGTGTGCAGTGT
AGCTGGCACCTTAGATGGGACGAGAAGAAAAAAAAAGAACTCGGTAAAAT
ATCAGCAGCCTGTGGCTGAGTTGAGTGGGTCAGTTCCGTGCAGCACTAGC
CTGCAACACCTTCTGGATGAAAGCCTCGCAGTCTCCTTAGCTGTTCTATT
TTGCCGTTGCGCCCCTCCACCCCCCCCTCAGCCCCCAAACATGGTGCTAC
AGTATCAAGTCTTGTCCTTGTTCATCGAATCCGGAGGATACTCCCTGTCG
TCCAATCTCCTTCGCGGACGCCCTCCCCCCCGTTCCCCCCCCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCGCCCCCTCCCCCGTTCCCCCCCCCCCAAGCGTGCCCCCCCCCGATCG
GGGGAGCCCGACGTCGAGAAAGTGTGGTCCCTGTTTTTTTTCTATTCCGC
CATTGTTGACTGGCGCATTTTCTTTGGTCTGTTGATTGGCACCATCGATG
CTGTTCAGAACCACGCTCGCGCGCGCAAGAGGGCGGGCTCCCGCTAAATT
TCTTGCTAGAAAAGGTGTACCACGGCTCTTTTTGGAGGTAGTTGGCTTGT
GACCACCGAACGCGTCCTCGTCGTTAGTTGTAACCAGTATTGTACGGATG
CCATAAGGTGCTTGATGTTGAGCCCGGATTTTAATGTGAAAGACAACAAC
AGCAACAACAACACACACGGCAGGAGAGAGAGGTAAAGGAGGAGAAGAAG
AAGGAGGCGGACGTAGAAGCAGCCAAGATCTACGAGCAGTTCGTGCAGTC
TTTCGACGGCGGGGGGCCCGACGACGGGAAGACTTTTCTCAGAGGGGGCG
TCGCTGGAGGCAGGGGGGGGGGGGGNNNN
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Coding sequence (CDS) from alignment at Scaffold_518:109518..111396-

>EsuBft1110_8a-0001 ID=EsuBft1110_8a-0001|Name=EsuBft1110_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=291bp|location=Sequence derived from alignment at Scaffold_518:109518..111396- (Ectocarpus subulatus male Bft15b)
ATGGCGGATCCAGGGAAGAGGATGCCGTGGGGCATGAAGATCGGCGGGCT
CAAGCCGGGGGCGAAGGAGACCATCACGGACAAGAAGCTCAAGGCCTTCG
TCGTCGGCAAGCAGAAGAAGAGCAGGTTGCAAAAGGAGAGAGAGGTAAAG
GAGGAGAAGAAGAAGGAGGCGGACGTAGAAGCAGCCAAGATCTACGAGCA
GTTCGTGCAGTCTTTCGACGGCGGGGGGCCCGACGACGGGAAGACTTTTC
TCAGAGGGGGCGTCGCTGGAGGCAGGGGGGGGGGGGGNNNN
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