EsuBft1110_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1110_6a-0001
Unique Name	EsuBft1110_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_518	contig	Scaffold_518:70452..71945 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6087.XP_004206654.1
ProteomeId	EsuBft1110_6
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	33154\|Opisthokonta
Length	149
Hectar predicted targeting category	other localisation
Evalue	1.37e-05
EggNOG OGs	2CNQC@1\|root,2QXFF@2759\|Eukaryota,39Y03@33154\|Opisthokonta
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1110_6a	EsuBft1110_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_518 70452..71945 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1110_6a-0001-exon	EsuBft1110_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_518 70452..71945 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1110_6a-0001-cds	EsuBft1110_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_518 70452..71393 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1110_6a-0001-exon	agat-three_prime_utr-1058	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_518 71394..71945 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1110_6a-0001	EsuBft1110_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_518 70452..71393 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_518:70452..71945+
coding sequence from alignment at Scaffold_518:70452..71945+

spliced messenger RNA

>EsuBft1110_6a-0001 ID=EsuBft1110_6a-0001|Name=EsuBft1110_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1494bp|location=Sequence derived from alignment at Scaffold_518:70452..71945+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTGGCCCCTTTTCTCCGCTTCTCGCAGCAGAGCCTTCAGCAACCT
CCCGACTTGTCCTGACGACGACGGTCAGCATGAGACAGACGCATGGGTAT
TCGTATCGAGTGACCCCAACCATGACTTCGATTTCCACATCTACGCCATG
GACATCATCCTTCGGTACTACATCACGGGGGATGGGCGGGCCGCTACTGC
TGGAACACCGGTCCCCACGGTGCACATCTTCACCGACGGGTGCGCCAAAC
AGTACAAGGGGAAGCGCAACTTTTACGCTGTGGCCAAGAGCTTGCACAGG
CTTGGTAACGTCCTCATCCACAACTTCGCGGTCACGTCGCACTTCAAAGG
CGCCCACGATGGCATCGGGGGGTTGCTGAAGGCTCTGCTGCGAGAAGTGG
AGAAAAGGGGCCAGCGCATTCACAACACCCAAGCCGCAGCCGACTTCCTC
CAGGTCTACCCCGAGGCAAAGGAGGATGGAGGAGGTCACTTTTCAAGCTG
GTCCCCCTACCGGACCAAGAGGTTCCACATCAAGCTTCTTGGATACCGAG
AGATCACTCGCCCGTTCGTAGATTTGACGGGCATCTCTGGGAGTTCCAAG
CAGCACCAGTTCATGGGAGCGGAGGTCCAGGAGGAGGAGAGCTCGGGCGT
AGGCGTAGAGGTGCAGTTAGAGAACGACGTTCCCCTCGTAGGTGGCGAGA
AAGAGGTTGTAGCTAACCCGCAGAGATGGCAGGCGGACGAATCAACCGTT
CTGACGCTTCTGGCTGTCACGAAGCGATACAAGCTACGCGTTCGCCAGGC
GTCGTGCCACCGCTCGAAGTGTAGTGTTGGAGCTTACAACGACTGCGTCC
CGGCCAAGAAGTACGCGGGGATGGTGGGTATGGTGAAGGCTGTGTCGGGC
AAGCACAAGGTTACTCGGGCGTCTTGTGGTGTAGGGAATTGAGGGGTGTC
CGTGGTGCACGTCATGTTCTCGTGTTTGGGTAGTTTTGTTGCAGTTTTAG
TCTAGTTTTTGTACTTTTTTTGTTGCTGTGTGCTNCCAAGAGGTTCCACA
TCAAGCTTCTTGGATACCGAGAGATCACTCGCCCGTTCGTAGATTTGACG
GGCATCTCTGGGAGTTCCAAGCAGCACCAGTTCATGGGAGCGGAGGTCCA
GGAGGAGGAGAGCTCGGGCGTAGGCGTAGAGGTGCAGTTAGAGAACGACG
TTCCCCTCGTAGGTGGCGAGAAAGAGGTTGTAGCTAACCCGCAGAGATGG
CAGGCGGACGAATCAACCGTTCTGACGCTTCTGGCTGTCACGAAGCGATA
CAAGCTACGCGTTCGCCAGGCGTCGTGCCACCGCTCGAAGTGTAGTGTTG
GAGCTTACAACGACTGCGTCCCGGCCAAGAAGTACGCGGGGATGGTGGGT
ATGGTGAAGGCTGTGTCGGGCAAGCACAAGGTTACTCGGGCGTCTTGTGG
TGTAGGGAATTGAGGGGTGTCCGTGGTGCACGTCATGTTCTCGT

protein sequence of EsuBft1110_6a-0001

>EsuBft1110_6 ID=EsuBft1110_6|Name=EsuBft1110_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=313bp
MRWPLFSASRSRAFSNLPTCPDDDGQHETDAWVFVSSDPNHDFDFHIYAM
DIILRYYITGDGRAATAGTPVPTVHIFTDGCAKQYKGKRNFYAVAKSLHR
LGNVLIHNFAVTSHFKGAHDGIGGLLKALLREVEKRGQRIHNTQAAADFL
QVYPEAKEDGGGHFSSWSPYRTKRFHIKLLGYREITRPFVDLTGISGSSK
QHQFMGAEVQEEESSGVGVEVQLENDVPLVGGEKEVVANPQRWQADESTV
LTLLAVTKRYKLRVRQASCHRSKCSVGAYNDCVPAKKYAGMVGMVKAVSG
KHKVTRASCGVGN

mRNA from alignment at Scaffold_518:70452..71945+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1110_6a-0001 ID=EsuBft1110_6a-0001|Name=EsuBft1110_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1494bp|location=Sequence derived from alignment at Scaffold_518:70452..71945+ (Ectocarpus subulatus male Bft15b)
ATGCGCTGGCCCCTTTTCTCCGCTTCTCGCAGCAGAGCCTTCAGCAACCT
CCCGACTTGTCCTGACGACGACGGTCAGCATGAGACAGACGCATGGGTAT
TCGTATCGAGTGACCCCAACCATGACTTCGATTTCCACATCTACGCCATG
GACATCATCCTTCGGTACTACATCACGGGGGATGGGCGGGCCGCTACTGC
TGGAACACCGGTCCCCACGGTGCACATCTTCACCGACGGGTGCGCCAAAC
AGTACAAGGGGAAGCGCAACTTTTACGCTGTGGCCAAGAGCTTGCACAGG
CTTGGTAACGTCCTCATCCACAACTTCGCGGTCACGTCGCACTTCAAAGG
CGCCCACGATGGCATCGGGGGGTTGCTGAAGGCTCTGCTGCGAGAAGTGG
AGAAAAGGGGCCAGCGCATTCACAACACCCAAGCCGCAGCCGACTTCCTC
CAGGTCTACCCCGAGGCAAAGGAGGATGGAGGAGGTCACTTTTCAAGCTG
GTCCCCCTACCGGACCAAGAGGTTCCACATCAAGCTTCTTGGATACCGAG
AGATCACTCGCCCGTTCGTAGATTTGACGGGCATCTCTGGGAGTTCCAAG
CAGCACCAGTTCATGGGAGCGGAGGTCCAGGAGGAGGAGAGCTCGGGCGT
AGGCGTAGAGGTGCAGTTAGAGAACGACGTTCCCCTCGTAGGTGGCGAGA
AAGAGGTTGTAGCTAACCCGCAGAGATGGCAGGCGGACGAATCAACCGTT
CTGACGCTTCTGGCTGTCACGAAGCGATACAAGCTACGCGTTCGCCAGGC
GTCGTGCCACCGCTCGAAGTGTAGTGTTGGAGCTTACAACGACTGCGTCC
CGGCCAAGAAGTACGCGGGGATGGTGGGTATGGTGAAGGCTGTGTCGGGC
AAGCACAAGGTTACTCGGGCGTCTTGTGGTGTAGGGAATTGAGGGGTGTC
CGTGGTGCACGTCATGTTCTCGTGTTTGGGTAGTTTTGTTGCAGTTTTAG
TCTAGTTTTTGTACTTTTTTTGTTGCTGTGTGCTNCCAAGAGGTTCCACA
TCAAGCTTCTTGGATACCGAGAGATCACTCGCCCGTTCGTAGATTTGACG
GGCATCTCTGGGAGTTCCAAGCAGCACCAGTTCATGGGAGCGGAGGTCCA
GGAGGAGGAGAGCTCGGGCGTAGGCGTAGAGGTGCAGTTAGAGAACGACG
TTCCCCTCGTAGGTGGCGAGAAAGAGGTTGTAGCTAACCCGCAGAGATGG
CAGGCGGACGAATCAACCGTTCTGACGCTTCTGGCTGTCACGAAGCGATA
CAAGCTACGCGTTCGCCAGGCGTCGTGCCACCGCTCGAAGTGTAGTGTTG
GAGCTTACAACGACTGCGTCCCGGCCAAGAAGTACGCGGGGATGGTGGGT
ATGGTGAAGGCTGTGTCGGGCAAGCACAAGGTTACTCGGGCGTCTTGTGG
TGTAGGGAATTGAGGGGTGTCCGTGGTGCACGTCATGTTCTCGT

Coding sequence (CDS) from alignment at Scaffold_518:70452..71945+

>EsuBft1110_6a-0001 ID=EsuBft1110_6a-0001|Name=EsuBft1110_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=942bp|location=Sequence derived from alignment at Scaffold_518:70452..71945+ (Ectocarpus subulatus male Bft15b)
ATGCGCTGGCCCCTTTTCTCCGCTTCTCGCAGCAGAGCCTTCAGCAACCT
CCCGACTTGTCCTGACGACGACGGTCAGCATGAGACAGACGCATGGGTAT
TCGTATCGAGTGACCCCAACCATGACTTCGATTTCCACATCTACGCCATG
GACATCATCCTTCGGTACTACATCACGGGGGATGGGCGGGCCGCTACTGC
TGGAACACCGGTCCCCACGGTGCACATCTTCACCGACGGGTGCGCCAAAC
AGTACAAGGGGAAGCGCAACTTTTACGCTGTGGCCAAGAGCTTGCACAGG
CTTGGTAACGTCCTCATCCACAACTTCGCGGTCACGTCGCACTTCAAAGG
CGCCCACGATGGCATCGGGGGGTTGCTGAAGGCTCTGCTGCGAGAAGTGG
AGAAAAGGGGCCAGCGCATTCACAACACCCAAGCCGCAGCCGACTTCCTC
CAGGTCTACCCCGAGGCAAAGGAGGATGGAGGAGGTCACTTTTCAAGCTG
GTCCCCCTACCGGACCAAGAGGTTCCACATCAAGCTTCTTGGATACCGAG
AGATCACTCGCCCGTTCGTAGATTTGACGGGCATCTCTGGGAGTTCCAAG
CAGCACCAGTTCATGGGAGCGGAGGTCCAGGAGGAGGAGAGCTCGGGCGT
AGGCGTAGAGGTGCAGTTAGAGAACGACGTTCCCCTCGTAGGTGGCGAGA
AAGAGGTTGTAGCTAACCCGCAGAGATGGCAGGCGGACGAATCAACCGTT
CTGACGCTTCTGGCTGTCACGAAGCGATACAAGCTACGCGTTCGCCAGGC
GTCGTGCCACCGCTCGAAGTGTAGTGTTGGAGCTTACAACGACTGCGTCC
CGGCCAAGAAGTACGCGGGGATGGTGGGTATGGTGAAGGCTGTGTCGGGC
AAGCACAAGGTTACTCGGGCGTCTTGTGGTGTAGGGAATTGA