EsuBft110_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft110_8a-0001
Unique Name	EsuBft110_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_430	contig	Scaffold_430:78586..79323 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft110_8
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	73
Hectar predicted targeting category	other localisation
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-14_002190.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft110_8a	EsuBft110_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_430 78586..79323 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft110_8a-0001-exon	EsuBft110_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_430 78586..79323 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft110_8a-0001-cds	EsuBft110_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_430 78586..79323 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft110_8a-0001	EsuBft110_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_430 78586..79323 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_430:78586..79323+
coding sequence from alignment at Scaffold_430:78586..79323+

spliced messenger RNA

>EsuBft110_8a-0001 ID=EsuBft110_8a-0001|Name=EsuBft110_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=738bp|location=Sequence derived from alignment at Scaffold_430:78586..79323+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCTCCTGGGTCTGTCCAAGCTGCCGCCAGACGCGTCTCGCTCGGA
GCACCTGGCCCTCATCCGGCAGCACCGGTCGGTGCGCAAGGAGCGCGTCA
AGTCATCCTCCCCTGCGTCCCTGAAGCGAGGCGGCTCGTACTCGCGGGTG
ATGTCTTCCGGCGGCGGCGGCGGCGGCGGCGGCGAGGCCAGCTTTGGCAG
CAGGAACCCAGGGGAAGCAGACAGTGCCTCCGTTCCGCCGTCGGCAGAGG
GAGAGAAGTTGACGATTCAGCAGCAACAGCAGCAGCAGTGCCCAGATCGG
GAGGAAGGAGAGGAAGTCACGACGCCACATCACCACCACGACCACCAACC
CTCCGAGTGGCTGGACATGCGGGAGTCTTCGCTCAAGCTCACGCCGACCG
ACATGGACGAGCGGTTCCTCGGGAGCATCGAGAGCCTCATGAACCAGTTC
CCGGCCCCGCCGACCCGCGACCACGCCGCCGCGGCCGTGGTGGACGTGAC
CTCCCCGTCGACCGCGGCGCTTGGTAGGTTTAAGGGAGACGGCCGCCGCG
GGCTTCCAATGTCCAGGCCAAGCACCCAGTGGAGGGGCGTGAGCGGCGCC
GACGGCGCTGAAGACATGTCCCATTCTTGGCAGAACCCGATATACCAGCA
GCAGATGGAGAGCAGGCGTGGGGGCGCCGTGCGCGAGATAGACTCGCCGA
TGCGGATTCGGTATCCCAAGGATGAGTTCTCCTTGTAG

protein sequence of EsuBft110_8a-0001

>EsuBft110_8 ID=EsuBft110_8|Name=EsuBft110_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=245bp
MRLLGLSKLPPDASRSEHLALIRQHRSVRKERVKSSSPASLKRGGSYSRV
MSSGGGGGGGGEASFGSRNPGEADSASVPPSAEGEKLTIQQQQQQQCPDR
EEGEEVTTPHHHHDHQPSEWLDMRESSLKLTPTDMDERFLGSIESLMNQF
PAPPTRDHAAAAVVDVTSPSTAALGRFKGDGRRGLPMSRPSTQWRGVSGA
DGAEDMSHSWQNPIYQQQMESRRGGAVREIDSPMRIRYPKDEFSL

mRNA from alignment at Scaffold_430:78586..79323+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft110_8a-0001 ID=EsuBft110_8a-0001|Name=EsuBft110_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=738bp|location=Sequence derived from alignment at Scaffold_430:78586..79323+ (Ectocarpus subulatus male Bft15b)
ATGAGGCTCCTGGGTCTGTCCAAGCTGCCGCCAGACGCGTCTCGCTCGGA
GCACCTGGCCCTCATCCGGCAGCACCGGTCGGTGCGCAAGGAGCGCGTCA
AGTCATCCTCCCCTGCGTCCCTGAAGCGAGGCGGCTCGTACTCGCGGGTG
ATGTCTTCCGGCGGCGGCGGCGGCGGCGGCGGCGAGGCCAGCTTTGGCAG
CAGGAACCCAGGGGAAGCAGACAGTGCCTCCGTTCCGCCGTCGGCAGAGG
GAGAGAAGTTGACGATTCAGCAGCAACAGCAGCAGCAGTGCCCAGATCGG
GAGGAAGGAGAGGAAGTCACGACGCCACATCACCACCACGACCACCAACC
CTCCGAGTGGCTGGACATGCGGGAGTCTTCGCTCAAGCTCACGCCGACCG
ACATGGACGAGCGGTTCCTCGGGAGCATCGAGAGCCTCATGAACCAGTTC
CCGGCCCCGCCGACCCGCGACCACGCCGCCGCGGCCGTGGTGGACGTGAC
CTCCCCGTCGACCGCGGCGCTTGGTAGGTTTAAGGGAGACGGCCGCCGCG
GGCTTCCAATGTCCAGGCCAAGCACCCAGTGGAGGGGCGTGAGCGGCGCC
GACGGCGCTGAAGACATGTCCCATTCTTGGCAGAACCCGATATACCAGCA
GCAGATGGAGAGCAGGCGTGGGGGCGCCGTGCGCGAGATAGACTCGCCGA
TGCGGATTCGGTATCCCAAGGATGAGTTCTCCTTGTAG

Coding sequence (CDS) from alignment at Scaffold_430:78586..79323+

>EsuBft110_8a-0001 ID=EsuBft110_8a-0001|Name=EsuBft110_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=738bp|location=Sequence derived from alignment at Scaffold_430:78586..79323+ (Ectocarpus subulatus male Bft15b)
ATGAGGCTCCTGGGTCTGTCCAAGCTGCCGCCAGACGCGTCTCGCTCGGA
GCACCTGGCCCTCATCCGGCAGCACCGGTCGGTGCGCAAGGAGCGCGTCA
AGTCATCCTCCCCTGCGTCCCTGAAGCGAGGCGGCTCGTACTCGCGGGTG
ATGTCTTCCGGCGGCGGCGGCGGCGGCGGCGGCGAGGCCAGCTTTGGCAG
CAGGAACCCAGGGGAAGCAGACAGTGCCTCCGTTCCGCCGTCGGCAGAGG
GAGAGAAGTTGACGATTCAGCAGCAACAGCAGCAGCAGTGCCCAGATCGG
GAGGAAGGAGAGGAAGTCACGACGCCACATCACCACCACGACCACCAACC
CTCCGAGTGGCTGGACATGCGGGAGTCTTCGCTCAAGCTCACGCCGACCG
ACATGGACGAGCGGTTCCTCGGGAGCATCGAGAGCCTCATGAACCAGTTC
CCGGCCCCGCCGACCCGCGACCACGCCGCCGCGGCCGTGGTGGACGTGAC
CTCCCCGTCGACCGCGGCGCTTGGTAGGTTTAAGGGAGACGGCCGCCGCG
GGCTTCCAATGTCCAGGCCAAGCACCCAGTGGAGGGGCGTGAGCGGCGCC
GACGGCGCTGAAGACATGTCCCATTCTTGGCAGAACCCGATATACCAGCA
GCAGATGGAGAGCAGGCGTGGGGGCGCCGTGCGCGAGATAGACTCGCCGA
TGCGGATTCGGTATCCCAAGGATGAGTTCTCCTTGTAG