EsuBft110_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft110_6a-0001
Unique Name	EsuBft110_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_430	contig	Scaffold_430:60798..62632 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft110_6
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	144
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Heat Shock transcription factor
Ec32 ortholog	Ec-14_002210.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft110_6a	EsuBft110_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_430 60798..62632 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft110_6a-0001-exon	agat-exon-10935	Ectocarpus subulatus male Bft15b	exon	Scaffold_430 60798..60827 +
EsuBft110_6a-0001-exon	EsuBft110_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_430 61214..62632 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft110_6a-0001-cds	EsuBft110_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_430 60798..60827 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft110_6a-0001	EsuBft110_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_430 60798..62632 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_430:60798..62632+
coding sequence from alignment at Scaffold_430:60798..62632+

spliced messenger RNA

>EsuBft110_6a-0001 ID=EsuBft110_6a-0001|Name=EsuBft110_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1449bp|location=Sequence derived from alignment at Scaffold_430:60798..62632+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTTGGTCCGGGCACTGTCGAAGCCACCCCAGATCTTCTACAACCG
CGCTTTGAAGGGGCAAGATCGAACCAAGATCCTGGACCTCAAGCGAAAAC
CCAGCGCCGCCACTGCAGGCAAGAGCGCCACACACACGACGCCAGTCTCA
GACCAGCAGTCGCTTTCGAAATACTCCGGGGTCGACCCGAATGATGACCT
CGCCGCCTTGACCAAGATCCTGCCGCCGAAGATCTTGTCCTGGACGGAGC
TCAGCATTGACCAGAGGCGGAGCATCAGCGGCAGCTCTGATGATTCCTCT
ACCGCTGGCGGCGGTGGCGGCGGTCGCATCGGCAGTAGTGGATACGGGCG
GAACGGCGGGAGGCCCGGAGGTAGCGGGGAGAGCGGGCGTCTTCGGAATG
GTTGCATTCCCTCGTCGTTCTCGGCAGGCCGCGGCGGCGGCGGCGGCGGC
GGCGGCGGCAAGACAAGCCTCGGGCTGAATCCAGAGAATGCTCGGCACAG
CTTTTGTGGTTGGCAGAGCCCACGAGGGCACGCGAATGGAGGACATGGCG
TCGGCGGTGGTGTTGGCCGCGGCAACAGCAGCGCCGGTGTTGCTTTCGGC
AAGAGACAGGACCGTCGGGCCTACGGCTGGGAACGATCCCCGACCAAGCG
CAGACAAGACGGCGGCGGCGGAAGTGGTGGGGGCGTGGACAAGAGCACCT
CTATCCAGAACCTGCTCACAGCCGTGCAACTAGAGATCGAGGACCGCCGC
AGTACTAGCGCTGAACTCTGCAGCGAGACTTTCATGCCGAACCCCTTGCG
AACGCCCTGGGCAGCCCGCACCGCCACGAGCGATCCCCCCAGCGTGCCAA
TTCCAGACCCGCTACCACTCCCACCTCTCGTGGCCCCCACGATCCATGCC
AGCCTGCCTGCGGTACCCAACAATAACCACTCTGCAACAGACCCAACTTC
GCTGAGGCTCGTCTTCTCCTCTTCTACGGACGCTCTCCAGCCCCTGTCTC
CTCCGAAGCAGGTCGGGGTCAACGTCGGCACGCCCACCCGCAGCTCCCCT
TTCACCAGCAGCCGTGATGCGGAGGTCGAAGGGAAGAAGTTCGGGAGCTT
CGACGTGAAGAACTTCGGGGACAGCCTCCTAGGCAGCGGCGGTGATGGCG
CCATGGACCATTGGGACACAAAGCGGGATGGGCAGGGGAGAGGCTCCGTG
CCCTCCTCCGCGGATGGATCGACCAGGGCTTCGAGCGCAGCGCAGCTCGG
GAACGACATGGTCACCAGGGCGTTCGGGAGCGGAGGTGGCTGTGGCGGGG
CTGCCGCGGCCGCGCTTCTTCTACCATTCCCGGACCCCGAGCCTGAACAG
CCAGGAGGAGGCGTTACTTCGCCCGATCGGGCGCTCCCGTTGACTCCCTC
TCCGCTTTCTCTCGATCGCCCCGAGGACCGTCTGCTGGGGCCCTGGTAG

protein sequence of EsuBft110_6a-0001

>EsuBft110_6 ID=EsuBft110_6|Name=EsuBft110_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=482bp
MPLVRALSKPPQIFYNRALKGQDRTKILDLKRKPSAATAGKSATHTTPVS
DQQSLSKYSGVDPNDDLAALTKILPPKILSWTELSIDQRRSISGSSDDSS
TAGGGGGGRIGSSGYGRNGGRPGGSGESGRLRNGCIPSSFSAGRGGGGGG
GGGKTSLGLNPENARHSFCGWQSPRGHANGGHGVGGGVGRGNSSAGVAFG
KRQDRRAYGWERSPTKRRQDGGGGSGGGVDKSTSIQNLLTAVQLEIEDRR
STSAELCSETFMPNPLRTPWAARTATSDPPSVPIPDPLPLPPLVAPTIHA
SLPAVPNNNHSATDPTSLRLVFSSSTDALQPLSPPKQVGVNVGTPTRSSP
FTSSRDAEVEGKKFGSFDVKNFGDSLLGSGGDGAMDHWDTKRDGQGRGSV
PSSADGSTRASSAAQLGNDMVTRAFGSGGGCGGAAAAALLLPFPDPEPEQ
PGGGVTSPDRALPLTPSPLSLDRPEDRLLGPW

mRNA from alignment at Scaffold_430:60798..62632+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft110_6a-0001 ID=EsuBft110_6a-0001|Name=EsuBft110_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1835bp|location=Sequence derived from alignment at Scaffold_430:60798..62632+ (Ectocarpus subulatus male Bft15b)
ATGCCTTTGGTCCGGGCACTGTCGAAGCCAGTAAGAAGGGCGCGGTAGAG
GGCACTCTTGATGATTACCTCCCCCGCCATGGACGAGGCTCGTTCGTACA
GATTGCACCAACTGTTCAGCGAACACGTGCAGCGCTCACACCATCCAGGC
CCCTCTCCCTTGCACTGGTACGTTGCTGTGCGTTGATCCTTTGGATCCCG
TACCTTCTACCTCACGCACAGAGTTCGGAGAATATAGATGGAGACTTCGT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCGTCCCCCCCCCCCCGTCAGCCCCCC
TTCCCACGTGCGCCGCTTTCGTTCTGTGTGTCGCCGTGTAACGCCCCTCC
TCAACGACAACATCAGCCCCAGATCTTCTACAACCGCGCTTTGAAGGGGC
AAGATCGAACCAAGATCCTGGACCTCAAGCGAAAACCCAGCGCCGCCACT
GCAGGCAAGAGCGCCACACACACGACGCCAGTCTCAGACCAGCAGTCGCT
TTCGAAATACTCCGGGGTCGACCCGAATGATGACCTCGCCGCCTTGACCA
AGATCCTGCCGCCGAAGATCTTGTCCTGGACGGAGCTCAGCATTGACCAG
AGGCGGAGCATCAGCGGCAGCTCTGATGATTCCTCTACCGCTGGCGGCGG
TGGCGGCGGTCGCATCGGCAGTAGTGGATACGGGCGGAACGGCGGGAGGC
CCGGAGGTAGCGGGGAGAGCGGGCGTCTTCGGAATGGTTGCATTCCCTCG
TCGTTCTCGGCAGGCCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAAGAC
AAGCCTCGGGCTGAATCCAGAGAATGCTCGGCACAGCTTTTGTGGTTGGC
AGAGCCCACGAGGGCACGCGAATGGAGGACATGGCGTCGGCGGTGGTGTT
GGCCGCGGCAACAGCAGCGCCGGTGTTGCTTTCGGCAAGAGACAGGACCG
TCGGGCCTACGGCTGGGAACGATCCCCGACCAAGCGCAGACAAGACGGCG
GCGGCGGAAGTGGTGGGGGCGTGGACAAGAGCACCTCTATCCAGAACCTG
CTCACAGCCGTGCAACTAGAGATCGAGGACCGCCGCAGTACTAGCGCTGA
ACTCTGCAGCGAGACTTTCATGCCGAACCCCTTGCGAACGCCCTGGGCAG
CCCGCACCGCCACGAGCGATCCCCCCAGCGTGCCAATTCCAGACCCGCTA
CCACTCCCACCTCTCGTGGCCCCCACGATCCATGCCAGCCTGCCTGCGGT
ACCCAACAATAACCACTCTGCAACAGACCCAACTTCGCTGAGGCTCGTCT
TCTCCTCTTCTACGGACGCTCTCCAGCCCCTGTCTCCTCCGAAGCAGGTC
GGGGTCAACGTCGGCACGCCCACCCGCAGCTCCCCTTTCACCAGCAGCCG
TGATGCGGAGGTCGAAGGGAAGAAGTTCGGGAGCTTCGACGTGAAGAACT
TCGGGGACAGCCTCCTAGGCAGCGGCGGTGATGGCGCCATGGACCATTGG
GACACAAAGCGGGATGGGCAGGGGAGAGGCTCCGTGCCCTCCTCCGCGGA
TGGATCGACCAGGGCTTCGAGCGCAGCGCAGCTCGGGAACGACATGGTCA
CCAGGGCGTTCGGGAGCGGAGGTGGCTGTGGCGGGGCTGCCGCGGCCGCG
CTTCTTCTACCATTCCCGGACCCCGAGCCTGAACAGCCAGGAGGAGGCGT
TACTTCGCCCGATCGGGCGCTCCCGTTGACTCCCTCTCCGCTTTCTCTCG
ATCGCCCCGAGGACCGTCTGCTGGGGCCCTGGTAG

Coding sequence (CDS) from alignment at Scaffold_430:60798..62632+

>EsuBft110_6a-0001 ID=EsuBft110_6a-0001|Name=EsuBft110_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1449bp|location=Sequence derived from alignment at Scaffold_430:60798..62632+ (Ectocarpus subulatus male Bft15b)
ATGCCTTTGGTCCGGGCACTGTCGAAGCCACCCCAGATCTTCTACAACCG
CGCTTTGAAGGGGCAAGATCGAACCAAGATCCTGGACCTCAAGCGAAAAC
CCAGCGCCGCCACTGCAGGCAAGAGCGCCACACACACGACGCCAGTCTCA
GACCAGCAGTCGCTTTCGAAATACTCCGGGGTCGACCCGAATGATGACCT
CGCCGCCTTGACCAAGATCCTGCCGCCGAAGATCTTGTCCTGGACGGAGC
TCAGCATTGACCAGAGGCGGAGCATCAGCGGCAGCTCTGATGATTCCTCT
ACCGCTGGCGGCGGTGGCGGCGGTCGCATCGGCAGTAGTGGATACGGGCG
GAACGGCGGGAGGCCCGGAGGTAGCGGGGAGAGCGGGCGTCTTCGGAATG
GTTGCATTCCCTCGTCGTTCTCGGCAGGCCGCGGCGGCGGCGGCGGCGGC
GGCGGCGGCAAGACAAGCCTCGGGCTGAATCCAGAGAATGCTCGGCACAG
CTTTTGTGGTTGGCAGAGCCCACGAGGGCACGCGAATGGAGGACATGGCG
TCGGCGGTGGTGTTGGCCGCGGCAACAGCAGCGCCGGTGTTGCTTTCGGC
AAGAGACAGGACCGTCGGGCCTACGGCTGGGAACGATCCCCGACCAAGCG
CAGACAAGACGGCGGCGGCGGAAGTGGTGGGGGCGTGGACAAGAGCACCT
CTATCCAGAACCTGCTCACAGCCGTGCAACTAGAGATCGAGGACCGCCGC
AGTACTAGCGCTGAACTCTGCAGCGAGACTTTCATGCCGAACCCCTTGCG
AACGCCCTGGGCAGCCCGCACCGCCACGAGCGATCCCCCCAGCGTGCCAA
TTCCAGACCCGCTACCACTCCCACCTCTCGTGGCCCCCACGATCCATGCC
AGCCTGCCTGCGGTACCCAACAATAACCACTCTGCAACAGACCCAACTTC
GCTGAGGCTCGTCTTCTCCTCTTCTACGGACGCTCTCCAGCCCCTGTCTC
CTCCGAAGCAGGTCGGGGTCAACGTCGGCACGCCCACCCGCAGCTCCCCT
TTCACCAGCAGCCGTGATGCGGAGGTCGAAGGGAAGAAGTTCGGGAGCTT
CGACGTGAAGAACTTCGGGGACAGCCTCCTAGGCAGCGGCGGTGATGGCG
CCATGGACCATTGGGACACAAAGCGGGATGGGCAGGGGAGAGGCTCCGTG
CCCTCCTCCGCGGATGGATCGACCAGGGCTTCGAGCGCAGCGCAGCTCGG
GAACGACATGGTCACCAGGGCGTTCGGGAGCGGAGGTGGCTGTGGCGGGG
CTGCCGCGGCCGCGCTTCTTCTACCATTCCCGGACCCCGAGCCTGAACAG
CCAGGAGGAGGCGTTACTTCGCCCGATCGGGCGCTCCCGTTGACTCCCTC
TCCGCTTTCTCTCGATCGCCCCGAGGACCGTCTGCTGGGGCCCTGGTAG