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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D8LE41 |
| ProteomeId | EsuBft110_2 |
| Protein domains | PTHR30506 |
| Protein domains | IPR005115 |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SignalP-TM |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SignalP-noTM |
| Protein domains | TMhelix |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | TRANSMEMBRANE |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | upf0126 inner membrane protein os:escherichia coli (strain k12) gn:yads pe:1 sv:1 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 2991 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 3.96e-39 |
| EggNOG OGs | 2B6TB@1|root,2S0MY@2759|Eukaryota |
| Ec32 ortholog description | Uncharacterised domain UPF0126 |
| Ec32 ortholog | Ec-14_002260.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | UPF0126 domain |
| COG category | S |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0003333 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft110_2a-0001 ID=EsuBft110_2a-0001|Name=EsuBft110_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2991bp|location=Sequence derived from alignment at Scaffold_430:2061..6174+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCTACGACTGCTGAAATGCATTCTTCTACTCTCGGTGGCGTGGCGGCG ACCATGTGCGGCGGCTGAACTGTGGCGACCACAGCCGCAGCCACCGACAC CCCTCGCTCGCAACCACAACGGCGACTCTGACCCAGGGGGGCAGGACCGC ATTTTCCCCAACAGCAGCAGCGCTCCACGACAGACAGTGGTGCTGCCAGG AACGGTCGTTCATGCTCGTGGTGGAGGCATCAACGTTGCTTTTACTAGGG GCAGCAGGAACAAGTGGCAGGATGGAGTGAATCGGAGGGCTATCCCGACT CCAGAGGCGCTCAGCAGATATCCGAACTTTAAGAGCCCCGGCGGCCTCGT GCGCTTCTTGGACTACGTGGGAACGGTTTCTTTCGCGATGAGCGGAGCAG CCACGGCGGGCATGCGGGGGATGAACCTCCTGGGGTGCATTTTCGTGGGG GTGTTGGCGGCGACAGGCGGGGGCACTGTGCGGGACCTGCTGCTCGGCCA GACTCCGGTGTTTTGGCTCGTTGAGGTTGGGGTTCGCGGGGCATGGATAG TGCTGTTCTTTTGCGGCGCGGGTGACTTGGTCGGTCGGTCGCTTTGCCCT ACTTCGCCGTGTGCATTTCTTCGATTCCTTGCTTGCTTGGACGCCTGGGT AGAATTGGCTCTGCGGAGATTTTGCTCGGTGGATGGCGGGGTCGGTTGCC TGCCGTCGCTGGCACTTCTTTTTCTCATTGGACGCATATGGCGGTGCTTG CTCATGTTTGTTCTGCGGCACAGCAGCGTCGTGTGGCCGGTAGCAGTTCT TCTCAGCTGGACACCCCTCCTTCTCCCGCTTTCACAGGTCGAGTACGTGA CGATATGCGTGGTAACAGCGGTTGTGACGTTTGTGCTGTGGCCGGTGCTG TCTCGAGTGTCCGTCCTATCGCACATGGGCACCGGCTTGGACGGCTGGCT CTCCCAGGCAATAGACACGGTCGGGCTGGCTTCCTTCGCGGTGGCGGCGA CCCAGAACGGCATCCGAAGGAAGTGTCACCCGGGCACTACGATCGTCATC TGCTGTATCACGTGCTCCGGCGGAGGAATCCTGCGAGATGTCCTGACCTC GTCGCCGGTCATGGCGCTCTCGTCACACGCCCAGATGTACGTCAGCACGG CCGCCATTGGTTCGGGGGCGTACCTGCTCGCTAGGAGATATTCGAAAGAC CCTCTCTTCCGAATCTGCGTGGGATTCTTCACTGTGATCATCTTGCGCCT GCTGGCGTGTCTGTACGACCTCCGCCTCCCTCGAATGGTGTAGTACCCTC GAATGGTGTAGTCTTTTTGTTTTCATGCCCGCTTGCTTTCCAGAATTTAT TGTGTGCATGGGCGTGTTTTGTTTCCGTTGGTGGCATCGACCGCGCTACA TAGCTGGCTGGCGAACGAAAAAGGCGCCAGTCTCAGCACGGGTGTGTGTT TTTTTTTGTGTATTTTCGTCCTTTTTATTATGGCGACAGTCCCCCCATTT TTCGTGGTGAGACGTGTTCTACACTTTTCAGTGTATTCTTTCGTACAACT ACAACCATCCAGGGTCACACAGCAGGGGGTAAGCACCAGGCCTTTTTTCT TCTACTTTATTTCTTTTCATGCCCCCCCCTGCCTCCTGCGGTGCGTGCTG AATTTTTATTTTTATCACGAGAAGGGTCCAGCTGTCCCTTTCCCTCGTCA ACGGTGCTAACGTCGAAGTTTGGTACTCACGAGAGCTTTTTAGCTATACT TCGCTTTCACCCGCAAATTTCGTTAATTTTTCACCCCATGGGGATTCGAA CTCACGACCTCTGCGACTAGCGGATAACGAGGATACCACTAGACCACCGG GGCGACCGAGTAGGGCACGGGTACAACGTATGTATGGGTGGGGTGTGCGT GTGCGTGGTTGTTTGTGCTTTCGTCAAGCAGCATCAATTAGAGGCAAACC TGTCTTTTCATCGGTTGAAAAAAACGCAACACGCTTTTTATTTTTCCCCC GGGCCAGCCCCGACAGAAGAGGCAGAGAACGGGGCTCCGTCCGTGTGTTT ACGCATGTGTGCGTCTTCTCTGTGTCGGAAGCCGTTTGCAGCGGCGACTC GGTAACGAAGTGGGGTGCGCGAAGGAGAGCACCTTGGTGTTTGGGCAGCA ACGCATGCCTTCGAGTCTATTGGCTGTTATCTGCAGCTCCTCCGGTATGG GGTGCGTGAATCTTTGTTCGTCCAGATATTGTGTACTTGTGGTGCGAAAG GGGGGGGGGTGTAGGCATATGTGGACTTCCGGTTTAATAGAGGCATTCGA TGCTGGGCTGCTGTTTTTTTGTCCTTGTGTTGCCTGCCTGCGTCATCATG GCTGCCAAGGAACATCATAAACCGGTTCCTCCGGGTTCGCTCGCAAGCGT CCTCCCGCTTGTGATTGATGCCTGTTGTTCCTCATCAGAGTCTAGGTTGC GGTCCCTGTGCATGGTATGATTTGCCGTTATTTGGTCCGTTACGTGTCCT GTGGAAATATTTCTTGTTTTTTTCATGTGTGGCAGAGTACGCACACACAT GTCGTTGTTCTTGTACGGTTACCATAGTTGTCGTAAATTTTGTACGGTTG CCCATAGTCGTCGTAATCGTTGGTGTTACTGGTGTAGCGGTGGGTGGGTG GTTCACGCGGGTGTTTCGTTTGTTGCTTGGATGTGTCGTGTCTTTGGCCA ACTTGTTGACCCCGCCGTGCACAGAATGCCCGACGAGCTGGCAAGCGACG GTGCGGGCTGCTGGTGCTGAACGAAGCATGGCGTGCCGTGGTCCGCGAAC AGTAGTCGAGACGTATACAACTACCACCCCGAATGAGGACGCTTTGATGA TTGCTACTACTGCACTCGATGGACAATCGTGGAGTTCGAGCACGTGTTGA CCCTGTAGGTTCGGCGCTGAACCTTGGACCAGTGTATCTCCATCATGCTT GCGTGTGCTTCTTCGTTCGTGTTTTTTTTTTTAGTTCTGCA back to topprotein sequence of EsuBft110_2a-0001 >EsuBft110_2 ID=EsuBft110_2|Name=EsuBft110_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=430bp
MLRLLKCILLLSVAWRRPCAAAELWRPQPQPPTPLARNHNGDSDPGGQDR IFPNSSSAPRQTVVLPGTVVHARGGGINVAFTRGSRNKWQDGVNRRAIPT PEALSRYPNFKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVG VLAATGGGTVRDLLLGQTPVFWLVEVGVRGAWIVLFFCGAGDLVGRSLCP TSPCAFLRFLACLDAWVELALRRFCSVDGGVGCLPSLALLFLIGRIWRCL LMFVLRHSSVVWPVAVLLSWTPLLLPLSQVEYVTICVVTAVVTFVLWPVL SRVSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVI CCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAIGSGAYLLARRYSKD PLFRICVGFFTVIILRLLACLYDLRLPRMV back to topmRNA from alignment at Scaffold_430:2061..6174+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft110_2a-0001 ID=EsuBft110_2a-0001|Name=EsuBft110_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4114bp|location=Sequence derived from alignment at Scaffold_430:2061..6174+ (Ectocarpus subulatus male Bft15b) ATGCTACGACTGCTGAAATGCATTCTTCTACTCTCGGTGGCGTGGCGGCG
ACCATGTGCGGCGGCTGAACTGTGGCGACCACAGCCGCAGCCACCGACAC
CCCTCGCTCGCAACCACAACGGCGACTCTGACCCAGGGGGGCAGGACCGC
ATTTTCCCCAACAGCAGCAGCGCTCCACGACAGACAGTGGTGCTGCCAGG
AACGGTCGTTCATGCTCGTGGTGGAGGCATCAACGTTGCTTTTACTAGGG
GCAGCAGGAACAAGTGGCAGGATGGAGTGAATCGGAGGGCTATCCCGACT
CCAGAGGCGCTCAGCAGGTCGGCAGTTATTTACTCTTATGTTATTGTGCA
CGTACTTCATTGTAAATATTGTAATGTATCCCTCCAGCGCATGTATGCAT
ATAATATTTGTGCAGATTGCCACTCGAGCTCTAGGACTACAGCAGTAGAA
TCCCTCGAGCGCATGTATCCGTATAGTAGTGTAGATTGCCACTCGAGCTC
TAGAGCACGAGGTTTCCCGCTGCAACGATCGGCTGTGCAACTATCCTCCT
CCTGTATCCTCACCATACCCGCAGCCGCGTGCTGGTGCTGTATCTTCTCG
GCGCGCAGGGTGTAAACCGAAACATGAGCGCAGAATCTTGGCCACCGATG
GAACAGTTTCGATTCCCCTAAATTTCTCCATCCCAAGTAGTTGGAGTACG
TTTTGAACACCATTCCTCCTCTTATCGCTTGTTGCTGAAGGACACCCAAC
GATGTCCCTGCTGTCAACGCCTCCCGCAGCCGTAAGAGGGTGGGCTCATG
CGTGTGCTACAAACTCCACGAGAACCCGCACTGCTATAGTCAAGATGGCG
AGCAAACCAGCCCACCATTCATCCCTACGTTGTCGACGAAACAACGTCCC
GGGAGCTCTTTTCCCGCTAGAACCTTACTTTCGCCATTCGGCGATTCAAA
CGCATTTTTTTTTTTGTCAGTTGAGAACCCCCAAGTAAAACCCAACCGGC
GCGATCCACAACAGATATCCGAACTTTAAGAGCCCCGGCGGCCTCGTGCG
CTTCTTGGACTACGTGGGAACGGTTTCTTTCGCGATGAGCGGAGCAGCCA
CGGCGGGCATGCGGGGGATGAACCTCCTGGGGTGCATTTTCGTGGGGGTG
TTGGCGGCGACAGGCGGGGGCACTGTGCGGGACCTGCTGCTCGGCCAGAC
TCCGGTGTTTTGGCTCGTTGAGGTTGGGGTTCGCGGGGCATGGATAGTGC
TGTTCTTTTGCGGCGCGGGTGACTTGGTCGGTCGGTCGCTTTGCCCTACT
TCGCCGTGTGCATTTCTTCGATTCCTTGCTTGCTTGGACGCCTGGGTAGA
ATTGGCTCTGCGGAGATTTTGCTCGGTGGATGGCGGGGTCGGTTGCCTGC
CGTCGCTGGCACTTCTTTTTCTCATTGGACGCATATGGCGGTGCTTGCTC
ATGTTTGTTCTGCGGCACAGCAGCGTCGTGTGGCCGGTAGCAGTTCTTCT
CAGCTGGACACCCCTCCTTCTCCCGCTTTCACAGGTCGAGTACGTGACGA
TATGCGTGGTAACAGCGGTTGTGACGTTTGTGCTGTGGCCGGTGCTGTCT
CGAGTGTCCGTCCTATCGCACATGGGCACCGGCTTGGACGGCTGGCTCTC
CCAGGCAATAGACACGGTCGGGCTGGCTTCCTTCGCGGTGGCGGCGACCC
AGAACGGCATCCGAAGGAAGTGTCACCCGGGCACTACGATCGTCATCTGC
TGTATCACGTGCTCCGGCGGAGGAATCCTGCGAGATGTAGGTTTTGAAAC
CGCAGTTTGTGATTGAGGGGGAGTGCTTGCTTCCTACCGCTCGTCGTGGT
GTGGTGTATTTTTGTGCGAATCCGACACACGGTTGGAGACACCCCGACAA
ACGCGGCTTTCATGCATTTTCCTGCCAAAGCATCAATTCGCATTGGTTTC
GAGTGTTTTTTTTTTTCTGACTATCAATTAGGATGTGCATGTATGTGAAG
CTGTCGTTTCGGAATTGCGCCTCGGGAGGGCGGCTGCTAATGCCTACGAC
AATATATGCTCATAGGGGGGGGGAGCGTGAACAGTAACGACATCGGTACC
AGCAATCACAAGCAGCACGTTTTATGCGAGCAACAGCAGCAGAAGAGGAA
ACCACCGCGTCACCTAAACTCCGGTTTTGATGAATGATGCTGACCGTCTC
TAAACTTTGCAGGTCCTGACCTCGTCGCCGGTCATGGCGCTCTCGTCACA
CGCCCAGATGTACGTCAGCACGGCCGCCATTGGTTCGGGGGCGTACCTGC
TCGCTAGGAGATATTCGAAAGACCCTCTCTTCCGAATCTGCGTGGGATTC
TTCACTGTGATCATCTTGCGCCTGCTGGCGTGTCTGTACGACCTCCGCCT
CCCTCGAATGGTGTAGTACCCTCGAATGGTGTAGTCTTTTTGTTTTCATG
CCCGCTTGCTTTCCAGAATTTATTGTGTGCATGGGCGTGTTTTGTTTCCG
TTGGTGGCATCGACCGCGCTACATAGCTGGCTGGCGAACGAAAAAGGCGC
CAGTCTCAGCACGGGTGTGTGTTTTTTTTTGTGTATTTTCGTCCTTTTTA
TTATGGCGACAGTCCCCCCATTTTTCGTGGTGAGACGTGTTCTACACTTT
TCAGTGTATTCTTTCGTACAACTACAACCATCCAGGGTCACACAGCAGGG
GGTAAGCACCAGGCCTTTTTTCTTCTACTTTATTTCTTTTCATGCCCCCC
CCTGCCTCCTGCGGTGCGTGCTGAATTTTTATTTTTATCACGAGAAGGGT
CCAGCTGTCCCTTTCCCTCGTCAACGGTGCTAACGTCGAAGTTTGGTACT
CACGAGAGCTTTTTAGCTATACTTCGCTTTCACCCGCAAATTTCGTTAAT
TTTTCACCCCATGGGGATTCGAACTCACGACCTCTGCGACTAGCGGATAA
CGAGGATACCACTAGACCACCGGGGCGACCGAGTAGGGCACGGGTACAAC
GTATGTATGGGTGGGGTGTGCGTGTGCGTGGTTGTTTGTGCTTTCGTCAA
GCAGCATCAATTAGAGGCAAACCTGTCTTTTCATCGGTTGAAAAAAACGC
AACACGCTTTTTATTTTTCCCCCGGGCCAGCCCCGACAGAAGAGGCAGAG
AACGGGGCTCCGTCCGTGTGTTTACGCATGTGTGCGTCTTCTCTGTGTCG
GAAGCCGTTTGCAGCGGCGACTCGGTAACGAAGTGGGGTGCGCGAAGGAG
AGCACCTTGGTGTTTGGGCAGCAACGCATGCCTTCGAGTCTATTGGCTGT
TATCTGCAGCTCCTCCGGTATGGGGTGCGTGAATCTTTGTTCGTCCAGAT
ATTGTGTACTTGTGGTGCGAAAGGGGGGGGGGTGTAGGCATATGTGGACT
TCCGGTTTAATAGAGGCATTCGATGCTGGGCTGCTGTTTTTTTGTCCTTG
TGTTGCCTGCCTGCGTCATCATGGCTGCCAAGGAACATCATAAACCGGTT
CCTCCGGGTTCGCTCGCAAGCGTCCTCCCGCTTGTGATTGATGCCTGTTG
TTCCTCATCAGAGTCTAGGTTGCGGTCCCTGTGCATGGTATGATTTGCCG
TTATTTGGTCCGTTACGTGTCCTGTGGAAATATTTCTTGTTTTTTTCATG
TGTGGCAGAGTACGCACACACATGTCGTTGTTCTTGTACGGTTACCATAG
TTGTCGTAAATTTTGTACGGTTGCCCATAGTCGTCGTAATCGTTGGTGTT
ACTGGTGTAGCGGTGGGTGGGTGGTTCACGCGGGTGTTTCGTTTGTTGCT
TGGATGTGTCGTGTCTTTGGCCAACTTGTTGACCCCGCCGTGCACAGAAT
GCCCGACGAGCTGGCAAGCGACGGTGCGGGCTGCTGGTGCTGAACGAAGC
ATGGCGTGCCGTGGTCCGCGAACAGTAGTCGAGACGTATACAACTACCAC
CCCGAATGAGGACGCTTTGATGATTGCTACTACTGCACTCGATGGACAAT
CGTGGAGTTCGAGCACGTGTTGACCCTGTAGGTTCGGCGCTGAACCTTGG
ACCAGTGTATCTCCATCATGCTTGCGTGTGCTTCTTCGTTCGTGTTTTTT
TTTTTAGTTCTGCA back to topCoding sequence (CDS) from alignment at Scaffold_430:2061..6174+ >EsuBft110_2a-0001 ID=EsuBft110_2a-0001|Name=EsuBft110_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1293bp|location=Sequence derived from alignment at Scaffold_430:2061..6174+ (Ectocarpus subulatus male Bft15b) ATGCTACGACTGCTGAAATGCATTCTTCTACTCTCGGTGGCGTGGCGGCG ACCATGTGCGGCGGCTGAACTGTGGCGACCACAGCCGCAGCCACCGACAC CCCTCGCTCGCAACCACAACGGCGACTCTGACCCAGGGGGGCAGGACCGC ATTTTCCCCAACAGCAGCAGCGCTCCACGACAGACAGTGGTGCTGCCAGG AACGGTCGTTCATGCTCGTGGTGGAGGCATCAACGTTGCTTTTACTAGGG GCAGCAGGAACAAGTGGCAGGATGGAGTGAATCGGAGGGCTATCCCGACT CCAGAGGCGCTCAGCAGATATCCGAACTTTAAGAGCCCCGGCGGCCTCGT GCGCTTCTTGGACTACGTGGGAACGGTTTCTTTCGCGATGAGCGGAGCAG CCACGGCGGGCATGCGGGGGATGAACCTCCTGGGGTGCATTTTCGTGGGG GTGTTGGCGGCGACAGGCGGGGGCACTGTGCGGGACCTGCTGCTCGGCCA GACTCCGGTGTTTTGGCTCGTTGAGGTTGGGGTTCGCGGGGCATGGATAG TGCTGTTCTTTTGCGGCGCGGGTGACTTGGTCGGTCGGTCGCTTTGCCCT ACTTCGCCGTGTGCATTTCTTCGATTCCTTGCTTGCTTGGACGCCTGGGT AGAATTGGCTCTGCGGAGATTTTGCTCGGTGGATGGCGGGGTCGGTTGCC TGCCGTCGCTGGCACTTCTTTTTCTCATTGGACGCATATGGCGGTGCTTG CTCATGTTTGTTCTGCGGCACAGCAGCGTCGTGTGGCCGGTAGCAGTTCT TCTCAGCTGGACACCCCTCCTTCTCCCGCTTTCACAGGTCGAGTACGTGA CGATATGCGTGGTAACAGCGGTTGTGACGTTTGTGCTGTGGCCGGTGCTG TCTCGAGTGTCCGTCCTATCGCACATGGGCACCGGCTTGGACGGCTGGCT CTCCCAGGCAATAGACACGGTCGGGCTGGCTTCCTTCGCGGTGGCGGCGA CCCAGAACGGCATCCGAAGGAAGTGTCACCCGGGCACTACGATCGTCATC TGCTGTATCACGTGCTCCGGCGGAGGAATCCTGCGAGATGTCCTGACCTC GTCGCCGGTCATGGCGCTCTCGTCACACGCCCAGATGTACGTCAGCACGG CCGCCATTGGTTCGGGGGCGTACCTGCTCGCTAGGAGATATTCGAAAGAC CCTCTCTTCCGAATCTGCGTGGGATTCTTCACTGTGATCATCTTGCGCCT GCTGGCGTGTCTGTACGACCTCCGCCTCCCTCGAATGGTGTAG back to top
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