EsuBft110_23a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft110_23a-0001
Unique NameEsuBft110_23a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_430contigScaffold_430:343831..346048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog121225.PHUM531990-PA
ProteomeIdEsuBft110_23
Protein domainsSSF56672
Protein domainsPTHR10178
Protein domainsG3DSA
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon os:drosophila melanogaster gn:pol pe:3 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl33208|Metazoa
Length1494
Hectar predicted targeting categoryother localisation
Evalue4.68e-77
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,41WI3@6656|Arthropoda,3SIRK@50557|Insecta,3ECJT@33342|Paraneoptera
Date last modified2016-06-14
Date creation2016-06-14
DescriptionK02A2.6-like
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft110_23aEsuBft110_23aEctocarpus subulatus male Bft15bgeneScaffold_430 343831..346048 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft110_23a-0001-exonEsuBft110_23a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_430 343831..343899 -
EsuBft110_23a-0001-exonagat-exon-11072Ectocarpus subulatus male Bft15bexonScaffold_430 344268..345675 -
EsuBft110_23a-0001-exonagat-exon-11071Ectocarpus subulatus male Bft15bexonScaffold_430 346032..346048 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft110_23a-0001-cdsEsuBft110_23a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_430 343831..343899 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft110_23a-0001EsuBft110_23Ectocarpus subulatus male Bft15bpolypeptideScaffold_430 343831..346048 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft110_23a-0001 ID=EsuBft110_23a-0001|Name=EsuBft110_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1494bp|location=Sequence derived from alignment at Scaffold_430:343831..346048- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCGCCGTCTCGCGCTCAACCCTCTGGTGGAGAAGAAGGTCGATGC
AATTCTCGATCAATACCTTGCTGTCGGTCTTATCCAGCAATCGCAATCGC
CGTGGGCGAGCCCTCTGGTTGTCATGCCCAAGAAGGACGGCAATCTGCGT
TTGACCGTGAACTACAAAACTCTAAAAAAATTGTGCAGCCTTGGCCAACA
ACCGCAGCCGCGTGTTGACCACATCATCGATTCCCTGCACAAGGGCAAAG
TGTTTTCCATTTTTGATCTAAACTCCGCTTTCCACCAGATCACAGTCGAG
GAGGACACGGTTCAGCTTACGGCGTTTTGCACGCCCACACAACTTTTCGA
GTGGCTCCGTATGCCTCAGGGAAGCTCCGTTGCACCGTCATGGTTCACTA
TGGTCATCAACGAAGTGGTTAAAGGTCCGGACCATGTGCTTGCGTACCTA
GACGATGTGATTGTGTTTGACGCCGACCCCGTCCATCATGTCGCCAACAC
ACGGTTATTTTTGGGGCGTTTGGGCAAGTACAACCTAAAGCTTTCTCCTC
TCAAGAGTCGCGTCGGCGCTAAGGAGGCTGTATATTTAGGCCACACCATC
TCCCCTGCGGGTGTTAGTCCTCGTGCCGATAAGGTCGAAGCCCTCATAAA
AATGCCGCTGCCTAATAACGTCAAGCAGCTGCGTTTTTTGCTGGCTGGGC
TTTCGTATTACCGCAAATTCATCAAGGGTTTGGCCGTGCGCGTGAAACCA
CTCACCGACCTTTTGCGTAAGGACGCGAAGTTTTGTTATACGCCGGCTAT
GGCGGACACTGTCGAAGAACTCTTGGCGAAACTGTCCGAACCTCCGGTTT
TGGCTTTCCCGGATTGGGACGCTGTCGCGGATGGAAGCCGCTCTCTCTGG
CTTTGCTGTGACGCCTGTGTGGATGGTTTTGGCGCGGCTCTTGAACAAGC
ACAGGCCGATGGTTCCGTTCGCCCCATTCTGTTCGTTAGCCGCGCTACGC
TCGAATCCGAGCGCAATTGGACCGTGCTCGACTTGGAGGCTGGAAGTATC
GTGTGGGCAATCAAACGCTTGCGCGGCTACTTTTGGCCTACGCACTTTCT
TATTTATTCGGACCACAAAGCTTTGGAGAGCATCGTCAAGGTGGGTGAAC
ACAACGCCCGCGTTCAACGTTGGCTCGAATTTCTTTTCTCGTCCAATTAC
ACCCTTGTCTACCGCAATGGCACTGCCAACGCCAATGCGGATTTTCTTTC
CCGGTTGCCCTTGCTGGCAACCGAAACGGATAGACACGGTGACAACACCA
GTATCGCAGTCGATGACGTCGCGGGCGTTTATCTCATTCGTGCGTGCGGA
CGGAGTTATCACTCTAGTTCGACGCCGAACATCGGCTTAGGTGGGCTTGA
CATTGACGATCAACGAGACGCGTTGGACGCCGCGGCCTTCTCGAACGCCG
GCCCAGTGGAGCGGTGCCGCGAAATCTACGAGAGCCGTCGGTAA
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protein sequence of EsuBft110_23a-0001

>EsuBft110_23 ID=EsuBft110_23|Name=EsuBft110_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=497bp
MGRRLALNPLVEKKVDAILDQYLAVGLIQQSQSPWASPLVVMPKKDGNLR
LTVNYKTLKKLCSLGQQPQPRVDHIIDSLHKGKVFSIFDLNSAFHQITVE
EDTVQLTAFCTPTQLFEWLRMPQGSSVAPSWFTMVINEVVKGPDHVLAYL
DDVIVFDADPVHHVANTRLFLGRLGKYNLKLSPLKSRVGAKEAVYLGHTI
SPAGVSPRADKVEALIKMPLPNNVKQLRFLLAGLSYYRKFIKGLAVRVKP
LTDLLRKDAKFCYTPAMADTVEELLAKLSEPPVLAFPDWDAVADGSRSLW
LCCDACVDGFGAALEQAQADGSVRPILFVSRATLESERNWTVLDLEAGSI
VWAIKRLRGYFWPTHFLIYSDHKALESIVKVGEHNARVQRWLEFLFSSNY
TLVYRNGTANANADFLSRLPLLATETDRHGDNTSIAVDDVAGVYLIRACG
RSYHSSSTPNIGLGGLDIDDQRDALDAAAFSNAGPVERCREIYESRR
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mRNA from alignment at Scaffold_430:343831..346048-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft110_23a-0001 ID=EsuBft110_23a-0001|Name=EsuBft110_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2218bp|location=Sequence derived from alignment at Scaffold_430:343831..346048- (Ectocarpus subulatus male Bft15b)
ATGGGCCGCCGTCTCGCGTGAATTCTTTGCATTCGAACGTCCCGGTTGCG
GATCCGAAGATCTCTACCTCTCCCGCGGCCCCACTGCCGCCGAAACCGCC
GCCACCGGAACTGTTGGAACGCCTCTCGGACGCGCAGCGAGTGAGTTTCG
CGAGTTGTGGCAACGTTTGCCTGCACATTTGCACGATGTCACTTTTGACT
TACACGACTCGGGTTGGACCCCGGAAGTCATCAACAGCCTGGCGGATGTG
CTGTGTGACTTTTCGGATGTGTTTTCGCGGTCACCGTCCGATTTCGGTTG
CTGTTCCGTGAAAGCGTTTCGTTTGGACGTGCCCGCGGACGCAAAACCGT
TGGCCTCGCGTCCCTACAAGTAGGCTCAACCCTCTGGTGGAGAAGAAGGT
CGATGCAATTCTCGATCAATACCTTGCTGTCGGTCTTATCCAGCAATCGC
AATCGCCGTGGGCGAGCCCTCTGGTTGTCATGCCCAAGAAGGACGGCAAT
CTGCGTTTGACCGTGAACTACAAAACTCTAAAAAAATTGTGCAGCCTTGG
CCAACAACCGCAGCCGCGTGTTGACCACATCATCGATTCCCTGCACAAGG
GCAAAGTGTTTTCCATTTTTGATCTAAACTCCGCTTTCCACCAGATCACA
GTCGAGGAGGACACGGTTCAGCTTACGGCGTTTTGCACGCCCACACAACT
TTTCGAGTGGCTCCGTATGCCTCAGGGAAGCTCCGTTGCACCGTCATGGT
TCACTATGGTCATCAACGAAGTGGTTAAAGGTCCGGACCATGTGCTTGCG
TACCTAGACGATGTGATTGTGTTTGACGCCGACCCCGTCCATCATGTCGC
CAACACACGGTTATTTTTGGGGCGTTTGGGCAAGTACAACCTAAAGCTTT
CTCCTCTCAAGAGTCGCGTCGGCGCTAAGGAGGCTGTATATTTAGGCCAC
ACCATCTCCCCTGCGGGTGTTAGTCCTCGTGCCGATAAGGTCGAAGCCCT
CATAAAAATGCCGCTGCCTAATAACGTCAAGCAGCTGCGTTTTTTGCTGG
CTGGGCTTTCGTATTACCGCAAATTCATCAAGGGTTTGGCCGTGCGCGTG
AAACCACTCACCGACCTTTTGCGTAAGGACGCGAAGTTTTGTTATACGCC
GGCTATGGCGGACACTGTCGAAGAACTCTTGGCGAAACTGTCCGAACCTC
CGGTTTTGGCTTTCCCGGATTGGGACGCTGTCGCGGATGGAAGCCGCTCT
CTCTGGCTTTGCTGTGACGCCTGTGTGGATGGTTTTGGCGCGGCTCTTGA
ACAAGCACAGGCCGATGGTTCCGTTCGCCCCATTCTGTTCGTTAGCCGCG
CTACGCTCGAATCCGAGCGCAATTGGACCGTGCTCGACTTGGAGGCTGGA
AGTATCGTGTGGGCAATCAAACGCTTGCGCGGCTACTTTTGGCCTACGCA
CTTTCTTATTTATTCGGACCACAAAGCTTTGGAGAGCATCGTCAAGGTGG
GTGAACACAACGCCCGCGTTCAACGTTGGCTCGAATTTCTTTTCTCGTCC
AATTACACCCTTGTCTACCGCAATGGCACTGCCAACGCCAATGCGGATTT
TCTTTCCCGGTTGCCCTTGCTGGCAACCGAAACGGATAGACACGGTGACA
ACACCAGTATCGCAGTCGATGACGTCGCGGGCGTTTATCTCATTCGTGCG
TGCGGACGGAGTTATCACTCTAGTTCGACGCCGAACATCGGCTTAGGTGG
GCTTGACATTGACGATCAACGAGACGCGTTGGTACACGCGCCTTTGACGG
AGGATGACTTTGGGGACTTCCGCCGCTTTGGGCCACAAATGGTCCTGCGG
GCTCCGTCGCCCTCCTCCGTAGTTGACTCGTCGATTTTTACGCTTCCTGG
TGTTTTCGCTGTTGTTTGCGATACAGTCCCCGTGAGTTCTGTGCCCGATG
GACCTCCTCCGGCTTCCGTTACTGCGGAGCCAGACGCCGCTCCCTCATTC
ACCGTCGGAACCTCGTTGGCTGCCTTGTCGCTTTCGCGTGGCCCTCTGAT
TTCTTCTCGTACTCGGGCGAAAACGAATTCGGCCTCTGGCATGGCTCACA
GCCGTCCCAATTATTTTCAAAAACAACCACGGGCCGTTGTGGTGCCCAGG
ACGCCGCGGCCTTCTCGAACGCCGGCCCAGTGGAGCGGTGCCGCGAAATC
TACGAGAGCCGTCGGTAA
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Coding sequence (CDS) from alignment at Scaffold_430:343831..346048-

>EsuBft110_23a-0001 ID=EsuBft110_23a-0001|Name=EsuBft110_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1494bp|location=Sequence derived from alignment at Scaffold_430:343831..346048- (Ectocarpus subulatus male Bft15b)
ATGGGCCGCCGTCTCGCGCTCAACCCTCTGGTGGAGAAGAAGGTCGATGC
AATTCTCGATCAATACCTTGCTGTCGGTCTTATCCAGCAATCGCAATCGC
CGTGGGCGAGCCCTCTGGTTGTCATGCCCAAGAAGGACGGCAATCTGCGT
TTGACCGTGAACTACAAAACTCTAAAAAAATTGTGCAGCCTTGGCCAACA
ACCGCAGCCGCGTGTTGACCACATCATCGATTCCCTGCACAAGGGCAAAG
TGTTTTCCATTTTTGATCTAAACTCCGCTTTCCACCAGATCACAGTCGAG
GAGGACACGGTTCAGCTTACGGCGTTTTGCACGCCCACACAACTTTTCGA
GTGGCTCCGTATGCCTCAGGGAAGCTCCGTTGCACCGTCATGGTTCACTA
TGGTCATCAACGAAGTGGTTAAAGGTCCGGACCATGTGCTTGCGTACCTA
GACGATGTGATTGTGTTTGACGCCGACCCCGTCCATCATGTCGCCAACAC
ACGGTTATTTTTGGGGCGTTTGGGCAAGTACAACCTAAAGCTTTCTCCTC
TCAAGAGTCGCGTCGGCGCTAAGGAGGCTGTATATTTAGGCCACACCATC
TCCCCTGCGGGTGTTAGTCCTCGTGCCGATAAGGTCGAAGCCCTCATAAA
AATGCCGCTGCCTAATAACGTCAAGCAGCTGCGTTTTTTGCTGGCTGGGC
TTTCGTATTACCGCAAATTCATCAAGGGTTTGGCCGTGCGCGTGAAACCA
CTCACCGACCTTTTGCGTAAGGACGCGAAGTTTTGTTATACGCCGGCTAT
GGCGGACACTGTCGAAGAACTCTTGGCGAAACTGTCCGAACCTCCGGTTT
TGGCTTTCCCGGATTGGGACGCTGTCGCGGATGGAAGCCGCTCTCTCTGG
CTTTGCTGTGACGCCTGTGTGGATGGTTTTGGCGCGGCTCTTGAACAAGC
ACAGGCCGATGGTTCCGTTCGCCCCATTCTGTTCGTTAGCCGCGCTACGC
TCGAATCCGAGCGCAATTGGACCGTGCTCGACTTGGAGGCTGGAAGTATC
GTGTGGGCAATCAAACGCTTGCGCGGCTACTTTTGGCCTACGCACTTTCT
TATTTATTCGGACCACAAAGCTTTGGAGAGCATCGTCAAGGTGGGTGAAC
ACAACGCCCGCGTTCAACGTTGGCTCGAATTTCTTTTCTCGTCCAATTAC
ACCCTTGTCTACCGCAATGGCACTGCCAACGCCAATGCGGATTTTCTTTC
CCGGTTGCCCTTGCTGGCAACCGAAACGGATAGACACGGTGACAACACCA
GTATCGCAGTCGATGACGTCGCGGGCGTTTATCTCATTCGTGCGTGCGGA
CGGAGTTATCACTCTAGTTCGACGCCGAACATCGGCTTAGGTGGGCTTGA
CATTGACGATCAACGAGACGCGTTGGACGCCGCGGCCTTCTCGAACGCCG
GCCCAGTGGAGCGGTGCCGCGAAATCTACGAGAGCCGTCGGTAA
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