EsuBft110_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft110_19a-0001
Unique NameEsuBft110_19a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_430contigScaffold_430:257238..260045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LLX5
ProteomeIdEsuBft110_19
Protein domainsSSF55486
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length98
Hectar predicted targeting categoryother localisation
Evalue2.77e-175
EggNOG OGs2CXMF@1|root,2RYE2@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionMet-zincin
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft110_19aEsuBft110_19aEctocarpus subulatus male Bft15bgeneScaffold_430 257238..260045 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft110_19a-0001-exonEsuBft110_19a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_430 257238..257435 +
EsuBft110_19a-0001-exonagat-exon-11014Ectocarpus subulatus male Bft15bexonScaffold_430 257959..258284 +
EsuBft110_19a-0001-exonagat-exon-11012Ectocarpus subulatus male Bft15bexonScaffold_430 259006..259188 +
EsuBft110_19a-0001-exonagat-exon-11013Ectocarpus subulatus male Bft15bexonScaffold_430 259772..260045 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft110_19a-0001-cdsEsuBft110_19a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_430 257238..257435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft110_19a-0001EsuBft110_19Ectocarpus subulatus male Bft15bpolypeptideScaffold_430 257238..260045 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft110_19a-0001 ID=EsuBft110_19a-0001|Name=EsuBft110_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=981bp|location=Sequence derived from alignment at Scaffold_430:257238..260045+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAAATACAAAGTCGGAGACCCCGCAGACGTGCTGCCCATCAGCGT
CCGCTTCTCCATCTCCATGCTGCCGTCCGAGCCCATGCAGCCGCGCTGGG
GGGACGAGCGCGTGGGGTACTTCAACACGGTGTTCAGCGATCTCGGTGAC
CACCGTGCAACACGGGAGGGCCGGAATACCGACCTCATCGACACTGAGGT
CATCCTCATCAACAAGCGGCGCATGACCCCTCCCACCGCCGCCGCCGCCG
CCGCCGCCGCCGCCGCCGCCGCCAGCGGCGGCGACGGAGACTCTCCCGCC
GACGAGGCGGCGGCGGCCACCCCTGAACCTGCCGCCGAGAGCGGCGAGCC
CCTGACGTACTACGTGGACCCTTCCGTCCCCCCGGAGTGGCGCGAGTACA
TGCGGGCTGGGGTGGAGGCGTGGAGGCCGGCGTTTGAGGCCGCCGGGCTC
GGAGGGGAGGCCATCCGCGCGGTCCTGCCTGGCGACGAGGCGTGGCCGTC
GGACTACGACCCGGGAGATATCAGGTTCAACTCCATCACGTGGGCAGTCG
ATGTGGACGAGGTGTTCGCACTGGGTCCTGCCACGATCGATCCCCGTACG
GGGGAGATCCTCCACAGCGGCATCGTCTTCACCAACGGCTGGATCAAGTC
CTGGTCGGCGTCCTTCGAGATCTACGGAGATTCGCCGGACGACGAGCCCT
CCGCAAGGCACAGATCTCTGTTGAATCGACCGCCGGATTCGCACGCCCAC
TCGCACTCCCACGGGCACGCCCACCACGGGCATCATTCGCACCACTCCCA
CCCTCATCATCATGCCGAAGGCGGCGGCGGAGGCGACAACGAGAGGGGGG
AGGGGGGGGTGCTGGAGAAGCTCTTGCCGTCTTTGGGCGGGGGCGGGCGA
CGGCACGGCGGGAGCGGGAGCCTGCGGTACCACGGACGCGGGGAATGCCA
AGAGGCGCGTGTTACTGTGGTACTGCTGTAG
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protein sequence of EsuBft110_19a-0001

>EsuBft110_19 ID=EsuBft110_19|Name=EsuBft110_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=326bp
MQKYKVGDPADVLPISVRFSISMLPSEPMQPRWGDERVGYFNTVFSDLGD
HRATREGRNTDLIDTEVILINKRRMTPPTAAAAAAAAAAAASGGDGDSPA
DEAAAATPEPAAESGEPLTYYVDPSVPPEWREYMRAGVEAWRPAFEAAGL
GGEAIRAVLPGDEAWPSDYDPGDIRFNSITWAVDVDEVFALGPATIDPRT
GEILHSGIVFTNGWIKSWSASFEIYGDSPDDEPSARHRSLLNRPPDSHAH
SHSHGHAHHGHHSHHSHPHHHAEGGGGGDNERGEGGVLEKLLPSLGGGGR
RHGGSGSLRYHGRGECQEARVTVVLL
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mRNA from alignment at Scaffold_430:257238..260045+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft110_19a-0001 ID=EsuBft110_19a-0001|Name=EsuBft110_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2808bp|location=Sequence derived from alignment at Scaffold_430:257238..260045+ (Ectocarpus subulatus male Bft15b)
ATGCAAAAATACAAAGTCGGAGACCCCGCAGACGTGCTGCCCATCAGCGT
CCGCTTCTCCATCTCCATGCTGCCGTCCGAGCCCATGCAGCCGCGCTGGG
GGGACGAGCGCGTGGGGTACTTCAACACGGTGTTCAGCGATCTCGGTGAC
CACCGTGCAACACGGGAGGGCCGGAATACCGACCTCATCGACACTGAGGT
GAGGCATAGCCGGCGGGAGCGTCGCGGGTTTGCTATTGGGGGGGGGGAGA
GGAGGGGGGGGTAAGATTTGTCCGGGCGTGTGCTTGGCATAGACTGCCAG
TCGTCCTAGTGTGGGTTTCTGTGAGTTGAGTAATTTGTTTTTTGGCCGAA
GGGAAGGGCTGCACGTCGACACACAACACTTCAGTTTCATCGTACCTTCG
TCTACATACCGGGCTAATGGCGTTTTCCCGTCCTTGCCCCCCCACCAGCC
CGTATTCCCTGCGACAAACACCCCACAATAGACAAGGGGGGTGATGGTCC
CCCTCATGATCTCTTGTCGCCGCCAAGAAACTCTAGCAGCGGTAAACACA
TCTCGAGGATAGAAAGGGGGACGGTACACAGAGCGCGTCAACCCTAACTC
TCTCAACCACCCTAGCTGTCTTCGACATCAACCGCACGCCGTCTATGATA
GCTGTCTTTGACACCAGTCCTACGCCGTCCGCGCGCGCCCCACTAAACGA
CGACCGTAAACATCGTCACAGGTCATCCTCATCAACAAGCGGCGCATGAC
CCCTCCCACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCAGCG
GCGGCGACGGAGACTCTCCCGCCGACGAGGCGGCGGCGGCCACCCCTGAA
CCTGCCGCCGAGAGCGGCGAGCCCCTGACGTACTACGTGGACCCTTCCGT
CCCCCCGGAGTGGCGCGAGTACATGCGGGCTGGGGTGGAGGCGTGGAGGC
CGGCGTTTGAGGCCGCCGGGCTCGGAGGGGAGGCCATCCGCGCGGTCCTG
CCTGGCGACGAGGCGTGGCCGTCGGACTACGACCCGGGAGATATCAGGTG
CAGATGTGAAGCGGGGCGAGGCAGGGGCATGGTGGTGGTGATATGGGGTG
GGCGGGAGGGCGGTTGTCGAGGTTTGGCATTTGCCGCGGGGGTGCGGTGG
ATTCTGCGGCTTGTGGAGATGGTATGCTGTTCGTGGAATCACGCGCGTGC
GGGACACCCGGTTTGCGCCGATTGTCCACGGTACAACTTGTGTCGTGCGC
AAGCGCCACCGGGGCTTTTGCTTGTGTGCGACACCGTGGAGACAACCTAA
CCCTACGTCTGTCTGACCCCGAGCCTCGCCAACCTCTTTATCACCATCCT
TTGTTCGGTCTCCTGTGTTACCCCTCAGCCCTAGGTACTGTATCCCTCAC
GGGTGTTGCTTGTCTTTCCTTGAACAAGACCGGTAAAGGACCCTTTGCCG
GCTTGAGTCCGTCTTCTAGGCTCTCGTCGGCTCTCCATCGTCGCAAACCC
CAACCGTTGTCCTTCCATCTCTCCACAAGACCCCATCTTCACCGTGACTC
GGAAAGATCAACTGCCATAGACACGGAATCTCCACTACTAACCGTCGCCA
ACTCCAGCCGTTACAGTTTCATATTTCCGTTTAGCCCCCAACCAGACGAA
CCAGACGGTGAAATCGGAAGGTTTAGTCCCATCACCGTGGACGTCGACTC
TGCACCCTCCCCAACTTCCAACTATCTTTCCACGAAACCCCTACCCCGGA
CCCTCGCTCGCTCGGAAGGTTCAACTCCATCACGTGGGCAGTCGATGTGG
ACGAGGTGTTCGCACTGGGTCCTGCCACGATCGATCCCCGTACGGGGGAG
ATCCTCCACAGCGGCATCGTCTTCACCAACGGCTGGATCAAGTCCTGGTC
GGCGTCCTTCGAGATCTACGGAGATTCGCCGGACGACGAGCCCTCCGCAA
GGTATTGGTTTATTCGGGTGATTGGCTCTTCGATTTCGGTGAAGTAGTTG
GTGGTGGTAGGAAATCCGGTTGCTTGGCTCTCGGATATCGGTGGTGCCGT
GTAGTAGAAGTTACCGTTGGTGGTGTCACCGATGTTGGTAAGTTGAGGAG
ATGGTGGCACACGACACGAAACACGAATACTGCTGCTGGTGTTGTCTCGT
ACGATTATTCCGTATTTTTGTCAGGGCTTCACTTCGGGGCAATGAATCCA
CGTAAAGGATTTAGTATGGAGGTAAACGTCACGCGGAGTTGAGTGTCTTT
GTTGTAGTTTTATTGTCGGTGCCGTGTAGGTATCGTGGTTACATGCCCAC
GGTAACAGTTCCGCGGTACGGATTTCCAAGTAAGTGAGCCCTGGTTCTTG
TCAGTGCCGTTGTTGCCACGGCTATCCGGCGTTTGTGGCCTCAGAAAGCA
CAGCCCTCAAAACCCTCCGCCCTACTTGCTCCGCCTTTGCATCCGCTGCA
CGCGGGCCAGGCAGCACATGCGACGTGAGACGCTCATACCCCCCCCCGGC
CTTGCCCTCCGCTCTTCGAAACGAAACCACCTAGGCACAGATCTCTGTTG
AATCGACCGCCGGATTCGCACGCCCACTCGCACTCCCACGGGCACGCCCA
CCACGGGCATCATTCGCACCACTCCCACCCTCATCATCATGCCGAAGGCG
GCGGCGGAGGCGACAACGAGAGGGGGGAGGGGGGGGTGCTGGAGAAGCTC
TTGCCGTCTTTGGGCGGGGGCGGGCGACGGCACGGCGGGAGCGGGAGCCT
GCGGTACCACGGACGCGGGGAATGCCAAGAGGCGCGTGTTACTGTGGTAC
TGCTGTAG
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Coding sequence (CDS) from alignment at Scaffold_430:257238..260045+

>EsuBft110_19a-0001 ID=EsuBft110_19a-0001|Name=EsuBft110_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=981bp|location=Sequence derived from alignment at Scaffold_430:257238..260045+ (Ectocarpus subulatus male Bft15b)
ATGCAAAAATACAAAGTCGGAGACCCCGCAGACGTGCTGCCCATCAGCGT
CCGCTTCTCCATCTCCATGCTGCCGTCCGAGCCCATGCAGCCGCGCTGGG
GGGACGAGCGCGTGGGGTACTTCAACACGGTGTTCAGCGATCTCGGTGAC
CACCGTGCAACACGGGAGGGCCGGAATACCGACCTCATCGACACTGAGGT
CATCCTCATCAACAAGCGGCGCATGACCCCTCCCACCGCCGCCGCCGCCG
CCGCCGCCGCCGCCGCCGCCGCCAGCGGCGGCGACGGAGACTCTCCCGCC
GACGAGGCGGCGGCGGCCACCCCTGAACCTGCCGCCGAGAGCGGCGAGCC
CCTGACGTACTACGTGGACCCTTCCGTCCCCCCGGAGTGGCGCGAGTACA
TGCGGGCTGGGGTGGAGGCGTGGAGGCCGGCGTTTGAGGCCGCCGGGCTC
GGAGGGGAGGCCATCCGCGCGGTCCTGCCTGGCGACGAGGCGTGGCCGTC
GGACTACGACCCGGGAGATATCAGGTTCAACTCCATCACGTGGGCAGTCG
ATGTGGACGAGGTGTTCGCACTGGGTCCTGCCACGATCGATCCCCGTACG
GGGGAGATCCTCCACAGCGGCATCGTCTTCACCAACGGCTGGATCAAGTC
CTGGTCGGCGTCCTTCGAGATCTACGGAGATTCGCCGGACGACGAGCCCT
CCGCAAGGCACAGATCTCTGTTGAATCGACCGCCGGATTCGCACGCCCAC
TCGCACTCCCACGGGCACGCCCACCACGGGCATCATTCGCACCACTCCCA
CCCTCATCATCATGCCGAAGGCGGCGGCGGAGGCGACAACGAGAGGGGGG
AGGGGGGGGTGCTGGAGAAGCTCTTGCCGTCTTTGGGCGGGGGCGGGCGA
CGGCACGGCGGGAGCGGGAGCCTGCGGTACCACGGACGCGGGGAATGCCA
AGAGGCGCGTGTTACTGTGGTACTGCTGTAG
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