EsuBft110_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft110_18a-0001
Unique Name	EsuBft110_18a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_430	contig	Scaffold_430:245827..248814 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft110_18
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	220
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft110_18a	EsuBft110_18a	Ectocarpus subulatus male Bft15b	gene	Scaffold_430 245827..248814 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft110_18a-0001	EsuBft110_18	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_430 245848..246702 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft110_18a-0001-exon	agat-exon-11011	Ectocarpus subulatus male Bft15b	exon	Scaffold_430 245827..246054 +
EsuBft110_18a-0001-exon	agat-exon-11010	Ectocarpus subulatus male Bft15b	exon	Scaffold_430 246661..248091 +
EsuBft110_18a-0001-exon	EsuBft110_18a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_430 248268..248814 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft110_18a-0001-exon	agat-five_prime_utr-657	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_430 245827..245847 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft110_18a-0001-cds	EsuBft110_18a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_430 245848..246054 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft110_18a-0001-exon	agat-three_prime_utr-1036	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_430 246703..248091 +
EsuBft110_18a-0001-exon	agat-three_prime_utr-1037	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_430 248268..248814 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_430:245827..248814+
coding sequence from alignment at Scaffold_430:245827..248814+

spliced messenger RNA

>EsuBft110_18a-0001 ID=EsuBft110_18a-0001|Name=EsuBft110_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2206bp|location=Sequence derived from alignment at Scaffold_430:245827..248814+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTTACCACCGGCCTGCTCCTGATGAGCTTTCCCATCGCCGCGATATCGGG
CGGTGACCAGCCCCCCACAAAGGTGATATTCGGAGCTTCTTACGCCAGGG
GCTCGTACGACGACGACAGGTCGGTGACTCTCCTTCACTACCCGGCGGAG
AACACGGAGGAGACGGTGTTCGTCTTCCGGCTCACGGAGGACGCGGCGGG
GGTCGACGTGCTGAGGGAGGAGCTCACGCGGGGGGGCGTACTCTTATGTT
TTGCATGCCTTAGCGGTTAGACCCTTGACCACGCGTCCTCGAGAGGACGG
AGCATTGTTCCAACAGGACCCATCACCGAAGGCCAATCGTTCCTTTCTAC
TTTGCCAACGGTGGCTTAACAATGTCTTCCCTAGTCTGTCTATCCTAACG
ATATCCCTTCCCGCCTTTTCAACCCACCTCCTATGCCCCACTACAGCTAC
CGTCCTTTCCTCTCTTTTCCATGCCTCAAACATCTCCCAGTACGTTCCAT
CTATTTTTCCCAGCCCAGTCACGTACACTTCCCTCTCCTTCTTGTACAAT
GGACATTCCGCGACTACATGAACACGGTCTTCGCATTCGAAGCCGCAATC
ACATTTGAACTCGTCGTCTTCCTCGTCTACCGTCCTATGTCTTCGTCGAC
GTTCTCGAAGGCCTATGTCCCCGGTCCTGAATTTGACCTTAAGCTTTGTT
CCTGCATCCATTGGTCCATGTAGGTAGTCCTTGAACCCTATTCCTTCCTT
CAACATTCCGTCCACCTCTAGACCCTCCTTCTCCTTGGATTCTTTCCTTA
GATTCTGTTCTTCTCTCTCGGCACAAGCAACAGATATCTTCTCCTTGAAC
CCCTGTAGACCCTCCGTTTCCAGCGTTTCATCTTCGTCGATGTCGAGCCC
CTTCCATACGTCCTCTACAACCTTGACCCATTCCGTGGGTTGTCTACCCC
TCTTTTTGTTTGCCCACTTCGCCTCCCATACAATTCTCGGCAACCTCTCC
TCTCCCATCCCGCACATGCGATACTGCCAGGTCAGCTTCCTCGCGTCTCT
TCCCGACCGTAGGGATTGGATCCCCAATTCTGCCCTCACGGCTGCATTAC
TTGTGCGCCTGGAGCATCCTAGGATGGTTTTCGCTGCTTTCATCTGCGCC
GCCTCGAGTTCTTTCACTACCTTCTTATTTCCTTCCCATACTTCTCCGGC
GTACTCTAGCGGCGGTACGATTACGCTCTTCAAAACCGTCAATTTGATGC
ATGTATCGAGGTGCCGGTTTGCGAGTATTGGGTGCAGCTTCCCTGCTCGT
GCTTTGCCCTTTTCCGCTACCTTGGACATGTGTGCATTCCACGAGCAGTC
TTTTGCGATCTTCACTCCGAGGTATGTGTACTGGTCCACTACTGCAATCT
CCTCGATCCCCCACTTCCATCTATGTTCTACTGGTTCCTCCTTGTTCTCG
TTGCAAACCATGACGGCACTCTTCTGAACGTTGGCAGACAATCTCCACTT
ATCAGTACACTCCTTCGCCGCGTCAATTTGCAGTTGCAGTCCCTCAGTGG
TGTCCGACATACCGACAAAATCATCCGCAAACAGCATTCCTGAAACCGAC
GTTTCCGTGTCCCCTACTTTTACTCCCTTCCGGACTGCCTCTACGACTTC
CAACAGATCATCGTTGATGAACACCTGGAACAATGTTGGGGACAGCGTGC
AACCTTGTGGGACCCCCTGCTCAATGTCGAAGAATTTGGACAATTCTCCG
TCTAACATGACCGCGCTTTTCGTGCACTCTGTCATCTTCTTCAGCACTCT
CCACATTTTCCCCTTGATCCCGTATTTTGACACTTGTTTCCACGACCCAT
TTCTCCATACGGTGTCGTATGCGTTGTTCATCGTCCAGGAAGAAGCAGTA
CGTCGGCTTTCCCGCCCTTTTTCTACCTTGGATGATTCTCCCTACCGTGA
ATATGTGGTCTACGCACCCCCTCTTCGTTCGGAAACCTGTCTGTCCCTCA
CTAATGCCATGTTCCTTCTCCAATACTCCCACTATCCTANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNN

protein sequence of EsuBft110_18a-0001

>EsuBft110_18 ID=EsuBft110_18|Name=EsuBft110_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=82bp
MSFPIAAISGGDQPPTKVIFGASYARGSYDDDRSVTLLHYPAENTEETVF
VFRLTEDAAGVDVLREELTRGGVLLCFACLSG

mRNA from alignment at Scaffold_430:245827..248814+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft110_18a-0001 ID=EsuBft110_18a-0001|Name=EsuBft110_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2988bp|location=Sequence derived from alignment at Scaffold_430:245827..248814+ (Ectocarpus subulatus male Bft15b)
CTTACCACCGGCCTGCTCCTGATGAGCTTTCCCATCGCCGCGATATCGGG
CGGTGACCAGCCCCCCACAAAGGTGATATTCGGAGCTTCTTACGCCAGGG
GCTCGTACGACGACGACAGGTCGGTGACTCTCCTTCACTACCCGGCGGAG
AACACGGAGGAGACGGTGTTCGTCTTCCGGCTCACGGAGGACGCGGCGGG
GGTCGACGTGCTGAGGGAGGAGCTCACGGTGAGAGAAGCGGAGGGAGGGC
GGGGGGGGAGAGAGAGAGGGGGGAGACATCGGCAGTGCGTGCATATGTGT
GAGCGAGAGATAGACAGTGTGTGTGGGCGACAGGGACGAACAGAGAGACA
TGGAGACAGACACAAAGAGAGAGACTTCGAGAGAAAGTGTCGGAGACAGA
GACAGGCAGAGAAAGAGACAGAGGGACAGAGAAAGGTAGCCATGATTTTT
CGGGGGGGTTCTCGTTTCGTTTTGGTCGCGTTGAAATGCGTTCTGACAGG
CTACATGAAGGCTGTTCTGTAGGCATTGACGTTGCCTTGCTTTTGCTGCA
ACACAACCGTCGTCGTCCTGCCGTGGGCCTTGCATCATCAACAGCCATTT
CCACCAATTATTGTTCTGCACCCAAAAGATTTTGCTTCCCCCTCCCCTAC
CCGGCAACAAACGTTGCATAATACGCAGCTTCGCACGAGCGATGTCGGCA
TGGAGACGTCCCTCTCGGAGAGCGCGCCCGCAGAGTGGATCACAACCCTG
CCGGTCCTTGAGTCCAACGGGGTTTCGGTGATGGCCAGCGCAGAGTGAGT
TGCAATTCTATTTCTACGGGTGGGGGGTGGGGAGCGGGGGGGCGTACTCT
TATGTTTTGCATGCCTTAGCGGTTAGACCCTTGACCACGCGTCCTCGAGA
GGACGGAGCATTGTTCCAACAGGACCCATCACCGAAGGCCAATCGTTCCT
TTCTACTTTGCCAACGGTGGCTTAACAATGTCTTCCCTAGTCTGTCTATC
CTAACGATATCCCTTCCCGCCTTTTCAACCCACCTCCTATGCCCCACTAC
AGCTACCGTCCTTTCCTCTCTTTTCCATGCCTCAAACATCTCCCAGTACG
TTCCATCTATTTTTCCCAGCCCAGTCACGTACACTTCCCTCTCCTTCTTG
TACAATGGACATTCCGCGACTACATGAACACGGTCTTCGCATTCGAAGCC
GCAATCACATTTGAACTCGTCGTCTTCCTCGTCTACCGTCCTATGTCTTC
GTCGACGTTCTCGAAGGCCTATGTCCCCGGTCCTGAATTTGACCTTAAGC
TTTGTTCCTGCATCCATTGGTCCATGTAGGTAGTCCTTGAACCCTATTCC
TTCCTTCAACATTCCGTCCACCTCTAGACCCTCCTTCTCCTTGGATTCTT
TCCTTAGATTCTGTTCTTCTCTCTCGGCACAAGCAACAGATATCTTCTCC
TTGAACCCCTGTAGACCCTCCGTTTCCAGCGTTTCATCTTCGTCGATGTC
GAGCCCCTTCCATACGTCCTCTACAACCTTGACCCATTCCGTGGGTTGTC
TACCCCTCTTTTTGTTTGCCCACTTCGCCTCCCATACAATTCTCGGCAAC
CTCTCCTCTCCCATCCCGCACATGCGATACTGCCAGGTCAGCTTCCTCGC
GTCTCTTCCCGACCGTAGGGATTGGATCCCCAATTCTGCCCTCACGGCTG
CATTACTTGTGCGCCTGGAGCATCCTAGGATGGTTTTCGCTGCTTTCATC
TGCGCCGCCTCGAGTTCTTTCACTACCTTCTTATTTCCTTCCCATACTTC
TCCGGCGTACTCTAGCGGCGGTACGATTACGCTCTTCAAAACCGTCAATT
TGATGCATGTATCGAGGTGCCGGTTTGCGAGTATTGGGTGCAGCTTCCCT
GCTCGTGCTTTGCCCTTTTCCGCTACCTTGGACATGTGTGCATTCCACGA
GCAGTCTTTTGCGATCTTCACTCCGAGGTATGTGTACTGGTCCACTACTG
CAATCTCCTCGATCCCCCACTTCCATCTATGTTCTACTGGTTCCTCCTTG
TTCTCGTTGCAAACCATGACGGCACTCTTCTGAACGTTGGCAGACAATCT
CCACTTATCAGTACACTCCTTCGCCGCGTCAATTTGCAGTTGCAGTCCCT
CAGTGGTGTCCGACATACCGACAAAATCATCCGCAAACAGCATTCCTGAA
ACCGACGTTTCCGTGTCCCCTACTTTTACTCCCTTCCGGACTGCCTCTAC
GACTTCCAACAGATCGTTGATGAACACCTGGAACAATNAGTAAACTTCTT
CGCCGCGTCAATTTGCAGTTGCAGTCCCTCAGGGGTGTCCGACATACCGA
CAAAATCATCCGCAAACACCATTCCTGAAACCGACGTTTCCGTGTCCCCT
ACAAATACTCCCTTCCGGACTGCCTCTACGACGACCAACAGATCGTTGAT
GAACACCTGGAACAATGTTGGGGACAGCGTGCAACCTTGTGGGACCCCCT
GCTCAATGTCGAAGAATTTGGACAATTCTCCGTCTAACATGACCGCGCTT
TTCGTGCACTCTGTCATCTTCTTCAGCACTCTCCACATTTTCCCCTTGAT
CCCGTATTTTGACACTTGTTTCCACGACCCATTTCTCCATACGGTGTCGT
ATGCGTTGTTCATCGTCCAGGAAGAAGCAGTACGTCGGCTTTCCCGCCCT
TTTTCTACCTTGGATGATTCTCCCTACCGTGAATATGTGGTCTACGCACC
CCCTCTTCGTTCGGAAACCTGTCTGTCCCTCACTAATGCCATGTTCCTTC
TCCAATACTCCCACTATCCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Coding sequence (CDS) from alignment at Scaffold_430:245827..248814+

>EsuBft110_18a-0001 ID=EsuBft110_18a-0001|Name=EsuBft110_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=249bp|location=Sequence derived from alignment at Scaffold_430:245827..248814+ (Ectocarpus subulatus male Bft15b)
ATGAGCTTTCCCATCGCCGCGATATCGGGCGGTGACCAGCCCCCCACAAA
GGTGATATTCGGAGCTTCTTACGCCAGGGGCTCGTACGACGACGACAGGT
CGGTGACTCTCCTTCACTACCCGGCGGAGAACACGGAGGAGACGGTGTTC
GTCTTCCGGCTCACGGAGGACGCGGCGGGGGTCGACGTGCTGAGGGAGGA
GCTCACGCGGGGGGGCGTACTCTTATGTTTTGCATGCCTTAGCGGTTAG