EsuBft110_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft110_12a-0001
Unique NameEsuBft110_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_430contigScaffold_430:121817..127026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
StatusManually annotated
Seed ortholog2880.D8LLY5
ProteomeIdEsuBft110_12
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsPTHR24089
Protein domainsIPR023395
Protein domainsTRANSMEMBRANE
Protein domainsIPR018108
Ownerapollo_admin@sb-roscoff.fr
Notemitochondrial substrate carrier family protein s os:dictyostelium discoideum gn:mcfs pe:3 sv:1 [Automatic annotation]
Nb exon7
Max annot lvl2759|Eukaryota
Length1319
Hectar predicted targeting categoryother localisation
Evalue7.47e-214
EggNOG OGsKOG0762@1|root,KOG0762@2759|Eukaryota
Ec32 ortholog descriptionMitochondrial carrier domain
Ec32 orthologEc-14_002120.1
Date last modified2016-09-21
Date creation2016-06-14
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
DescriptionMitochondrial carnitine/acylcarnitine carrier protein
DescriptionBelongs to the mitochondrial carrier (TC 2.A.29) family
COG categoryU
BRITEko00000,ko00001,ko02000
NoteGroisillier A., annotator
Cross References
External references for this mRNA
DatabaseAccession
TCDB2.A.29...
GO0055085
GO0071702
GO0008324
GO0016020
GO0015171
GO0043231
GO0006812
GO0071705
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft110_12aEsuBft110_12aEctocarpus subulatus male Bft15bgeneScaffold_430 121817..127026 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft110_12a-0001EsuBft110_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_430 122077..127026 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft110_12a-0001-exonagat-exon-10965Ectocarpus subulatus male Bft15bexonScaffold_430 121817..122505 -
EsuBft110_12a-0001-exonagat-exon-10964Ectocarpus subulatus male Bft15bexonScaffold_430 122986..123072 -
EsuBft110_12a-0001-exonagat-exon-10968Ectocarpus subulatus male Bft15bexonScaffold_430 123456..123533 -
EsuBft110_12a-0001-exonagat-exon-10969Ectocarpus subulatus male Bft15bexonScaffold_430 124190..124285 -
EsuBft110_12a-0001-exonagat-exon-10966Ectocarpus subulatus male Bft15bexonScaffold_430 124882..124981 -
EsuBft110_12a-0001-exonEsuBft110_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_430 125350..125500 -
EsuBft110_12a-0001-exonagat-exon-10967Ectocarpus subulatus male Bft15bexonScaffold_430 126909..127026 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft110_12a-0001-exonagat-three_prime_utr-1031Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_430 121817..122076 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft110_12a-0001-cdsEsuBft110_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_430 122077..122505 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft110_12a-0001 ID=EsuBft110_12a-0001|Name=EsuBft110_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1319bp|location=Sequence derived from alignment at Scaffold_430:121817..127026- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGAACCCCATCTATCTCCGCCGGACGATGTCGGGGCGAGCGCCAG
TCGACGAGGGCCGCAGGGGACAGAGACAGGGGCGTTCCTGTTGCATATCG
GCAAGCTATCCGTTGCAGGCACGATAGGGGGACTCGCAGAGTGCATGGCG
GCGTACCCGTTAGACACAGTCAAGACGAGGATGCAGACGTCGGAGGCGTC
TTCGTCGGGGGGTGCACTCCGGTGTTTCTCAACCGCTATCAGGGAGGACG
GGGCGCTGGCCCTGTATCGAGGAATGTCTTCCAGGGTGGTGGCAAGCATG
TTAGCGGCTTCGGTGTTGTTCGGCGCAAACGGGACCCTGAAAGAGGTATT
CGGCGCTGACTCGAGCCAGCCCCTGAGCGGACGGTTTATGTTGGCAGCGA
TGGGGACGGGCGTGCTGGAGGCGATTGCCTACTGCCCTCTGGAGCTTGTT
AAGACTCGAATGCAGGTTCTGAGAGGTTCACCAGCGGGCGTGACCGTGTG
GACGACGGGGGTTCAAATCTACCGTCACCATGGGCTTTTCAAGGGTTCCT
ACAAGGGTTTTTCGTCCATGCTACTCAAAGAAGGGATCGGCAACACTGTC
TACTTCGGCTCGTACGAGCTCTGCAAACAGGCGTTCGGGGGCAGAAGTAC
GGGGGGAGCGGTCAGGAGCGGCGGCGGCGGGGCCCACCGGGATGAACGAC
AACAGCAACGCCAAGAGCAGGCCGGGATTGGTCCTATCGTGGCAGCGGGG
GGCTGCGCCGGAGTCCTCTACACCGTCGCGACCCATCCGATAGACACCGT
CAAGTCGCTGGTGCAAACCGACTCGACCAAGGCTCCGAGGTACCGAGGCT
TCTTGGACGGGTGGCGACAAGCCTTGGCGCAAGGCCGCCGCCGCCGCGGG
GCTGGGAGGGGGGACGGCGTAGGGGGCGGGGCTGGTGATGGGCTGAAGGC
CTTCTTGGGCTTGTACAGGGGGCTTTCGCCAGCGATAGCGCGGGCGTTCT
TGGGAAACTCGGCCTTGTTCGTGACGTACGAGAGCGTGCTAGATGTCCTC
GGAAGATGACGGCTGATCGGTGTGCTGGCGCCAGTGTTGTAAGTACACAC
GTGCCGGCGAACCAGAGCAGGAGTGCCGGGACATGGAATCTTTGTGGTCC
GGTAATGGGCCATCGCCGTTGCCGTCCTAGATTCTGCCGCGTTCCCAATT
GTTTCTTTGGGCGCGAGATTGGGATCTGAGTTGTTGCGTGTTCCGCTCTC
ACAGTTGGTATCCAGGACAAGCGTATACGGTCTGAAGAGAGATGAGGTAG
TGCGGATGTAAGAGAACAG
back to top

protein sequence of EsuBft110_12a-0001

>EsuBft110_12 ID=EsuBft110_12|Name=EsuBft110_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=352bp
MGEPHLSPPDDVGASASRRGPQGTETGAFLLHIGKLSVAGTIGGLAECMA
AYPLDTVKTRMQTSEASSSGGALRCFSTAIREDGALALYRGMSSRVVASM
LAASVLFGANGTLKEVFGADSSQPLSGRFMLAAMGTGVLEAIAYCPLELV
KTRMQVLRGSPAGVTVWTTGVQIYRHHGLFKGSYKGFSSMLLKEGIGNTV
YFGSYELCKQAFGGRSTGGAVRSGGGGAHRDERQQQRQEQAGIGPIVAAG
GCAGVLYTVATHPIDTVKSLVQTDSTKAPRYRGFLDGWRQALAQGRRRRG
AGRGDGVGGGAGDGLKAFLGLYRGLSPAIARAFLGNSALFVTYESVLDVL
GR
back to top

mRNA from alignment at Scaffold_430:121817..127026-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft110_12a-0001 ID=EsuBft110_12a-0001|Name=EsuBft110_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5210bp|location=Sequence derived from alignment at Scaffold_430:121817..127026- (Ectocarpus subulatus male Bft15b)
ATGGGCGAACCCCATCTATCTCCGCCGGACGATGTCGGGGCGAGCGCCAG
TCGACGAGGGCCGCAGGGGACAGAGACAGGGGCGTTCCTGTTGCATATCG
GCAAGCTATCCGTTGCAGGTGAGGAGCGCAACCTTCTGGTTGTCGTGGAT
GAGTTGCGCAGCTAATATCCACGCCCTCGTGACTCTGTCTGATGCCGAGG
AGGCCTGATTCTCTCGTGTGTGATGTCTCGGTTTTCCAGGTTTTTATTTT
ATCCGACAGCTCGCTCAAAAGTCTCGACTGAAGCCAGACCTGCGGCTGGA
AAGAGAGTGACGACATGACAATCTTCAATACTGCATCAATACTTAACGTA
CCGCTGGAATCGAGTCTACTACACTGACTGTATGCTACCGCTGGAAGTGC
GTCTTCCCTGCTGTGTATCCTTTAGTCTACGGACGATAGGTTCGTGAGTG
TAGAGATGGTACAGCAGTAGTCTCGATGGATGTGGGTGATGGGGTTGGGT
CAGTAGCCTTCGCAGGGTTTTTCGTAGTTCTGTTATGCAAACATGTTGGA
TAAAGCATGCAATCGGGGAAGTTGGGTTAGGGTTAGGTTAGGTTGGGTTG
GGTGTCTATGTACAGCGATGCAACCTGTGTTTTTTTAGAAAGTAATCAGC
CGGGGTCACACCACCAAAGAAAGGTACGCTGAAGGTTTTTTGTGCTATTG
TGAATAGAGGCCGAAATCAAACCATTTTTGAAAAAGACGACAATCGTGGT
GTAATAGTCGGGCTGACTATGTAGTCTACATGTTATGATTGAGCTTCTGG
ACGACTTAGTTGTGAACGGCTTGAATATGTAACATCACGCTGCTAGTGGA
ACGATTGTGGTGCTTGTTTCCGCTTGGCGCAACCATGACACCACACCCAG
CGTCTTCGCCACCGTGACTGCTGCCCGTGGTGTTACACACAAATATTCCA
GATGTAAATGATGTCCCTGAAAATGCAACGTGAAAGTCTACTCAAACAAG
GCAGCCGCGTCAGCGTTGATTTGTTGGTTAGATTGGGGCCACAAATCCTC
AAAGTCTACGACGAGGGGAGAAAAGAGGTCAACGATACGTATGGAAACAT
AAGACTCGGTGCATCATTGACGTGTAACTATTACAGCTGCTACTACTACT
GGTACTAGTTAAACATACATTCACCGGCCGGGGGCTAGGAGAACGTTGGT
GCGCCATGCTACAGGCATTGGCAGTAGAGTGGAGTTGGGTGGACCAGTGG
GAAAACACAAAACTCCAGAAGAAGACATCCTGCTGCTCAACGCGTGACCC
CCCCTTCCCTCTGTGCGCTTGCAGTTGTGGCGTGCTCAACACGGCTCTCA
AGTTTTTCACGACTCACGATCCCATCTTTTATCTACACATACAACCCAGA
AGAATCCCCGGACATGTCATGCGATGACATAAATGTCGTGTGAACGGGCG
TCCACCAAGCGTCGTAGTGAGGACACTGCCGTTCGTGCCCCCCCGCCTCC
CCCTCCTCGTGGTGGTTTGCCACCAGGCACGATAGGGGGACTCGCAGAGT
GCATGGCGGCGTACCCGTTAGACACAGTCAAGACGAGGATGCAGACGTCG
GAGGCGTCTTCGTCGGGGGGTGCACTCCGGTGTTTCTCAACCGCTATCAG
GGAGGACGGGGCGCTGGCCCTGTATCGGTGAGATGGCAGTGCGAGGGGGC
GTGGGGAGAGGGGCGTGCTACGAGTGCAGTTGGGTGCATGTGGCGGAAAA
CGTGCGTAGCCTTCATGCGAACGGTCGTCACCCCTCCCACCGCCTCTCGA
CTTCTGCATGTGTAAACTCGCCGCCTTTTTTTCAGGTGCTGTGAGGGGTT
TTCTCTTCGTTTTGGGGTATGTATGACGAACGGCAAATACTTTGTTCTAG
AGTTGTGGGTTGGCAGCGAGCATGACGATTTCGTTGCTTCTGCGTTCGGT
TACATATGCATGCATACATACGACATTGACTTTTTTTTTTACAACCTCCC
CCGCGGGGCGAATACTCCCGTGCTGGTGGCTGTTCGCCTCCTTAGAGGAA
TGTCTTCCAGGGTGGTGGCAAGCATGTTAGCGGCTTCGGTGTTGTTCGGC
GCAAACGGGACCCTGAAAGAGGTATTCGGCGCTGACTCGAGCCAGGTGAC
AATACACTATCGAAGATTAGGGCATTGGCTACTAAAGGGCATTCCGCTGC
GGGCTTTGACTAGAAATAGTAGTGTGACTGCATGCGCCAAACCGTTGCAG
AGGAGTCGTGATTCTGCGGGGCCGTTACAGGGTATCCCCGACGTTGCCAG
CGACGGCATTGCGCGGGATGGATCTCAAAAATGTATTTGAAGAGATGAAC
GCATACATCACGCCTCAAGTACTAAACGCACCACGAGAAACTTCGAGCCT
GTTGTTTGTTGGCCATGCATTTCTACAACGTTGAGTTCCGTTCTCCGCCA
CAACTGTTGTGAAACGTAGCCTGGGCCAGGGCATATCGCTCCGTCCCCGT
ATTGTAGGGATGCGAGTTCTAAGGTCTAAATACCACGCACGGCATGCTTT
CACATCAGTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CCCCCCCCCCCCCCTCCCCTTCGAGGTCAGAAGGCTAACAACTACGGCAT
GCGTACTCCCCCTCCCTCCCTCTCCGCTTCCTTGACTGCAGCCCCTGAGC
GGACGGTTTATGTTGGCAGCGATGGGGACGGGCGTGCTGGAGGCGATTGC
CTACTGCCCTCTGGAGCTTGTTAAGACTCGAATGCAGGTATCCATTGCAA
TTTGTCTCCTATCGTGGTTGCGCCATGTTTTAGTTTTTCGACGTGATGTT
GCTTGCTCGCTTGTGTGTGGGCAAGTGTTCCATGGTGGGTGAATTTGTCG
TCATCATTGTCGTTGCCGTTGCCGTATGTCGTTGACTGTGTGCGCGTCCC
CATGTACTCCAGGCTCAAGTCTTTGCCTGCTCGGTGTGTGTTTCGACGTA
CCAGTCGCGGATCACAAAGACAGGAGGTATATTTGTACACTGTACACACT
TTCACAACGAGAGGCCTTCTTTATTCATCCCCGCCCACCTGGTACACCGA
GACGGAGACGGCGCGAACCGTTTGTGCTCCTATATTTCACCCGATCCCGA
ATTATTTCCGACGGAAATCACTCCAAATACCTTCTTCGCTCTTTTTCGTT
GTCCTGTGGTACTTGTTGGGCGCAATGAATGATGCTCGTATTTCGTAAGA
GTCGTAACCCACGTCAGCTGTTTCCAAGCCAGGTTGAAACCGTGATACCA
CATGACATGATGCGTGCATGCACTCCCTCCTTTGAGAGTATGTTTGCACA
TGCTGCTCCTTCCCCGCTCTGCGGGCTTAACAAAAGGAGCTGTTATCCCC
CATTCTCTGCTGCTGTTTTGGGTGTTGTAATCGTCGCAAACAGGTTCTGA
GAGGTTCACCAGCGGGCGTGACCGTGTGGACGACGGGGGTTCAAATCTAC
CGTCACCATGGGCTTTTCAAGGTGAGCAAGCAGCAAGTGTTTCTGTTTCC
AGCAGCGTGCGTTTTGTGCCCTTGAACCAACTGCGCTTGCCTGTCTCGCG
AGGAGAAAGAGCAGCATGGACTCCGCGCGCATCATCGGTCGTTTATGTAC
GTAATTACCGAGCTTGCAGAGAACGTGAAAGCATTCGAGAAATAAATGCC
GCACGAGACAAAATATGAAAATATGTCTTGGCTTACGGGCCCCAGGAGGG
ACAATTTCTGTGTGTTGTGTATGTCCCCTCCCTTTGTCGTCTTCCCCTCC
TCTCCCTCCGTGTGATTGTTCTGACGGTACACGCACCACCCTGAAACACT
GGCGGTGCTAAAACAGATTGCCCCTCCTTCTCGACGGCCCCGCCGCCTCT
GCAGGGTTCCTACAAGGGTTTTTCGTCCATGCTACTCAAAGAAGGGATCG
GCAACACTGTCTACTTCGGCTCGTACGAGCTCTGCAAACAGGTACTACGA
GGTTACGGAGAAGCGGACTTGAGGTTCTCTCTCGTGACTCCAGCTCACGG
CCCTCTCTTACCGCTTTCTCCAAAGTCTATCGAAGACAACCTCCGTGCGT
GCTTTGTGCTTCTCCCGTTGTTTCGTCGACAGCGCTAGCTGGCTTGCCAA
AAGCAAAAGCAGCAAATCTTGCGCTATGAGTGGGACATGGAAAAAAAGTC
CGCGGGACCCCTCGACGGGGGAAGACGCGGAGGGGATTCAACGACAGGGT
CCAACCTGCGCTCGCGCCCGCGCGTCCGTTTGGATTTTGGAAGTTGTTGG
TTGTTCAGCAGTCAGAGAAACCCCGAGGCACCAACACACACGTGCACACA
GTGCATGCATGTAGTGGATTTTTTGTGACAACCGGTGCTAGTAGCCCAAT
ATACTTGAAAAGAGGATGCATGCTGACACTAAATCCACCACCCTACAACG
CCCTCGCATGTGCGGCCGAAGGCGTTCGGGGGCAGAAGTACGGGGGGAGC
GGTCAGGAGCGGCGGCGGCGGGGCCCACCGGGATGAACGACAACAGCAAC
GCCAAGAGCAGGCCGGGATTGGTCCTATCGTGGCAGCGGGGGGCTGCGCC
GGAGTCCTCTACACCGTCGCGACCCATCCGATAGACACCGTCAAGTCGCT
GGTGCAAACCGACTCGACCAAGGCTCCGAGGTACCGAGGCTTCTTGGACG
GGTGGCGACAAGCCTTGGCGCAAGGCCGCCGCCGCCGCGGGGCTGGGAGG
GGGGACGGCGTAGGGGGCGGGGCTGGTGATGGGCTGAAGGCCTTCTTGGG
CTTGTACAGGGGGCTTTCGCCAGCGATAGCGCGGGCGTTCTTGGGAAACT
CGGCCTTGTTCGTGACGTACGAGAGCGTGCTAGATGTCCTCGGAAGATGA
CGGCTGATCGGTGTGCTGGCGCCAGTGTTGTAAGTACACACGTGCCGGCG
AACCAGAGCAGGAGTGCCGGGACATGGAATCTTTGTGGTCCGGTAATGGG
CCATCGCCGTTGCCGTCCTAGATTCTGCCGCGTTCCCAATTGTTTCTTTG
GGCGCGAGATTGGGATCTGAGTTGTTGCGTGTTCCGCTCTCACAGTTGGT
ATCCAGGACAAGCGTATACGGTCTGAAGAGAGATGAGGTAGTGCGGATGT
AAGAGAACAG
back to top

Coding sequence (CDS) from alignment at Scaffold_430:121817..127026-

>EsuBft110_12a-0001 ID=EsuBft110_12a-0001|Name=EsuBft110_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1059bp|location=Sequence derived from alignment at Scaffold_430:121817..127026- (Ectocarpus subulatus male Bft15b)
ATGGGCGAACCCCATCTATCTCCGCCGGACGATGTCGGGGCGAGCGCCAG
TCGACGAGGGCCGCAGGGGACAGAGACAGGGGCGTTCCTGTTGCATATCG
GCAAGCTATCCGTTGCAGGCACGATAGGGGGACTCGCAGAGTGCATGGCG
GCGTACCCGTTAGACACAGTCAAGACGAGGATGCAGACGTCGGAGGCGTC
TTCGTCGGGGGGTGCACTCCGGTGTTTCTCAACCGCTATCAGGGAGGACG
GGGCGCTGGCCCTGTATCGAGGAATGTCTTCCAGGGTGGTGGCAAGCATG
TTAGCGGCTTCGGTGTTGTTCGGCGCAAACGGGACCCTGAAAGAGGTATT
CGGCGCTGACTCGAGCCAGCCCCTGAGCGGACGGTTTATGTTGGCAGCGA
TGGGGACGGGCGTGCTGGAGGCGATTGCCTACTGCCCTCTGGAGCTTGTT
AAGACTCGAATGCAGGTTCTGAGAGGTTCACCAGCGGGCGTGACCGTGTG
GACGACGGGGGTTCAAATCTACCGTCACCATGGGCTTTTCAAGGGTTCCT
ACAAGGGTTTTTCGTCCATGCTACTCAAAGAAGGGATCGGCAACACTGTC
TACTTCGGCTCGTACGAGCTCTGCAAACAGGCGTTCGGGGGCAGAAGTAC
GGGGGGAGCGGTCAGGAGCGGCGGCGGCGGGGCCCACCGGGATGAACGAC
AACAGCAACGCCAAGAGCAGGCCGGGATTGGTCCTATCGTGGCAGCGGGG
GGCTGCGCCGGAGTCCTCTACACCGTCGCGACCCATCCGATAGACACCGT
CAAGTCGCTGGTGCAAACCGACTCGACCAAGGCTCCGAGGTACCGAGGCT
TCTTGGACGGGTGGCGACAAGCCTTGGCGCAAGGCCGCCGCCGCCGCGGG
GCTGGGAGGGGGGACGGCGTAGGGGGCGGGGCTGGTGATGGGCTGAAGGC
CTTCTTGGGCTTGTACAGGGGGCTTTCGCCAGCGATAGCGCGGGCGTTCT
TGGGAAACTCGGCCTTGTTCGTGACGTACGAGAGCGTGCTAGATGTCCTC
GGAAGATGA
back to top