EsuBft1109_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1109_9a-0001
Unique NameEsuBft1109_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_527contigScaffold_527:419373..419814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1109_9
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length34
Hectar predicted targeting categorysignal anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1109_9aEsuBft1109_9aEctocarpus subulatus male Bft15bgeneScaffold_527 419373..419814 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1109_9a-0001-exonagat-exon-46328Ectocarpus subulatus male Bft15bexonScaffold_527 419373..419660 -
EsuBft1109_9a-0001-exonEsuBft1109_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_527 419759..419814 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1109_9a-0001-exonagat-three_prime_utr-1028Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_527 419373..419563 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1109_9a-0001-cdsEsuBft1109_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_527 419564..419660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1109_9a-0001EsuBft1109_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_527 419564..419814 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1109_9a-0001 ID=EsuBft1109_9a-0001|Name=EsuBft1109_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=344bp|location=Sequence derived from alignment at Scaffold_527:419373..419814- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTATTCTTCAAAGGAGGGACGATCACGAGCTGCTCTACAAGAAGGA
GGGTAGGATGGTTTGTGCGTGGGCTTTGTTCCTCGTCCTCATGCTCCGTT
TTGAAAGAGCTGGCTGGATGTTCAGTTATTTTTTAACCAGCAAAGAAAAC
TGATTGGCCCTGTTCGCCACACGAGCAGAAGGGTGTACCACAGCGGGAAA
GCCACGGGGGGTCAATGGGGAGGAAGGCTAAGGCGGAGCCCAGGACGGCA
GCTGTAGTCGGAGAGGCTAGGCTGGTAGAGACAAGTGATGGGGCTGGCAA
CCAGCAGAAAAAAAAAAGATTGCCGTGGGCCGACGGCTGCTTCC
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protein sequence of EsuBft1109_9a-0001

>EsuBft1109_9 ID=EsuBft1109_9|Name=EsuBft1109_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MVILQRRDDHELLYKKEGRMVCAWALFLVLMLRFERAGWMFSYFLTSKEN
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mRNA from alignment at Scaffold_527:419373..419814-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1109_9a-0001 ID=EsuBft1109_9a-0001|Name=EsuBft1109_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=442bp|location=Sequence derived from alignment at Scaffold_527:419373..419814- (Ectocarpus subulatus male Bft15b)
ATGGTTATTCTTCAAAGGAGGGACGATCACGAGCTGCTCTACAAGAAGGA
GGGTAGGTACATCACCTGGGGGTTAAATGCACCCTGAACAGCATATGGGC
GTTTGAGATTGCGGATTCGCGCGTCGTCCTTGTGGTTCAACATTGAACTT
GTAGGATGGTTTGTGCGTGGGCTTTGTTCCTCGTCCTCATGCTCCGTTTT
GAAAGAGCTGGCTGGATGTTCAGTTATTTTTTAACCAGCAAAGAAAACTG
ATTGGCCCTGTTCGCCACACGAGCAGAAGGGTGTACCACAGCGGGAAAGC
CACGGGGGGTCAATGGGGAGGAAGGCTAAGGCGGAGCCCAGGACGGCAGC
TGTAGTCGGAGAGGCTAGGCTGGTAGAGACAAGTGATGGGGCTGGCAACC
AGCAGAAAAAAAAAAGATTGCCGTGGGCCGACGGCTGCTTCC
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Coding sequence (CDS) from alignment at Scaffold_527:419373..419814-

>EsuBft1109_9a-0001 ID=EsuBft1109_9a-0001|Name=EsuBft1109_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=153bp|location=Sequence derived from alignment at Scaffold_527:419373..419814- (Ectocarpus subulatus male Bft15b)
ATGGTTATTCTTCAAAGGAGGGACGATCACGAGCTGCTCTACAAGAAGGA
GGGTAGGATGGTTTGTGCGTGGGCTTTGTTCCTCGTCCTCATGCTCCGTT
TTGAAAGAGCTGGCTGGATGTTCAGTTATTTTTTAACCAGCAAAGAAAAC
TGA
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