EsuBft1109_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1109_4a-0001
Unique NameEsuBft1109_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_527contigScaffold_527:462558..463484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1109_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length66
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1109_4aEsuBft1109_4aEctocarpus subulatus male Bft15bgeneScaffold_527 462558..463484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1109_4a-0001EsuBft1109_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_527 462578..462982 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1109_4a-0001-exonEsuBft1109_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_527 462558..463197 -
EsuBft1109_4a-0001-exonagat-exon-46294Ectocarpus subulatus male Bft15bexonScaffold_527 463465..463484 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1109_4a-0001-exonagat-three_prime_utr-1024Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_527 462558..462577 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1109_4a-0001-cdsEsuBft1109_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_527 462578..462982 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1109_4a-0001-exonagat-five_prime_utr-645Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_527 462983..463197 -
EsuBft1109_4a-0001-exonagat-five_prime_utr-646Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_527 463465..463484 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1109_4a-0001 ID=EsuBft1109_4a-0001|Name=EsuBft1109_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=660bp|location=Sequence derived from alignment at Scaffold_527:462558..463484- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AAATGCACGGGCGGCCCGTGCATCTCCATACTATCGGCCGTTTGAAACGG
ACCGACTTTTTTGTCAAAATTTTCGACATTTGTCTTTCAACAACTTGGAA
CCTGTGTGCAGTCTTTTAAACGTGTGACGTGGACTTGTGCAACTTGTGTA
AAAAAAATGACGCCGTCCGTGAGTTGTAGCGCTCACTTCGAGACAACACA
CACGACACAACACAAACCGCGGAAAACACGACATCATGGACACCGACATG
GATATCACGACCACCCAGCGTGGCCGGCAGACCAAAACCCCGGGGAAATT
CCAGCAGACGGGCTCTCTCGGTGCCGCCGTAGGCGGTGGAGGCTTGCTCT
CCAGCAAGAGAGTGCTGCTGCCTGGCATCTCGGGGAACACTCATGTTACC
ACGGGAGGCGCTGCCGCCACCAACACTCAGAGCGAGGGTGGAGCAGGCCG
CCGGCGAGGGGTGGCAACCACTGCTCCTACCCCCCCGGGAAAAGGAAAAA
ACAAAGCGGCGGACGCGAAGCAACAACTGCAAGCCATCATGGCGGACCGC
CGTTTTTCGGACGACACAGCAACAGCTACAGCAGACAGCATCGTCAACGT
TGGCAACAGCGACGATAGCAATAGCGACAGCGACAGATGACTCACACACA
ACCCTAGCTG
back to top

protein sequence of EsuBft1109_4a-0001

>EsuBft1109_4 ID=EsuBft1109_4|Name=EsuBft1109_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=134bp
MDTDMDITTTQRGRQTKTPGKFQQTGSLGAAVGGGGLLSSKRVLLPGISG
NTHVTTGGAAATNTQSEGGAGRRRGVATTAPTPPGKGKNKAADAKQQLQA
IMADRRFSDDTATATADSIVNVGNSDDSNSDSDR
back to top

mRNA from alignment at Scaffold_527:462558..463484-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1109_4a-0001 ID=EsuBft1109_4a-0001|Name=EsuBft1109_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=927bp|location=Sequence derived from alignment at Scaffold_527:462558..463484- (Ectocarpus subulatus male Bft15b)
AAATGCACGGGCGGCCCGTGGTTCATGGGTTGCTTCTTGATCCCGTGCGG
TGTTTCAGAAATGAAGTTGTAGACGAATTGGAGTCGGGGCTGAGGAGGAG
AGGGCAGAGGAGGAGAGGAGGTGCAGCCAACGTAAATGGGCAACATTAGG
GAGACGGATCACTTGTAGCAGTAGTGTACCAACAACTCTTGCCGGAAACT
GAAAGCGGTGGTCTGCCTCGTCTCCGGTGCTCGATTGTTTCCAAGTCCTT
AATTTTAAGGCGGATAGTTCTTCCTCAAAATCATTAGCATCTCCATACTA
TCGGCCGTTTGAAACGGACCGACTTTTTTGTCAAAATTTTCGACATTTGT
CTTTCAACAACTTGGAACCTGTGTGCAGTCTTTTAAACGTGTGACGTGGA
CTTGTGCAACTTGTGTAAAAAAAATGACGCCGTCCGTGAGTTGTAGCGCT
CACTTCGAGACAACACACACGACACAACACAAACCGCGGAAAACACGACA
TCATGGACACCGACATGGATATCACGACCACCCAGCGTGGCCGGCAGACC
AAAACCCCGGGGAAATTCCAGCAGACGGGCTCTCTCGGTGCCGCCGTAGG
CGGTGGAGGCTTGCTCTCCAGCAAGAGAGTGCTGCTGCCTGGCATCTCGG
GGAACACTCATGTTACCACGGGAGGCGCTGCCGCCACCAACACTCAGAGC
GAGGGTGGAGCAGGCCGCCGGCGAGGGGTGGCAACCACTGCTCCTACCCC
CCCGGGAAAAGGAAAAAACAAAGCGGCGGACGCGAAGCAACAACTGCAAG
CCATCATGGCGGACCGCCGTTTTTCGGACGACACAGCAACAGCTACAGCA
GACAGCATCGTCAACGTTGGCAACAGCGACGATAGCAATAGCGACAGCGA
CAGATGACTCACACACAACCCTAGCTG
back to top

Coding sequence (CDS) from alignment at Scaffold_527:462558..463484-

>EsuBft1109_4a-0001 ID=EsuBft1109_4a-0001|Name=EsuBft1109_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=405bp|location=Sequence derived from alignment at Scaffold_527:462558..463484- (Ectocarpus subulatus male Bft15b)
ATGGACACCGACATGGATATCACGACCACCCAGCGTGGCCGGCAGACCAA
AACCCCGGGGAAATTCCAGCAGACGGGCTCTCTCGGTGCCGCCGTAGGCG
GTGGAGGCTTGCTCTCCAGCAAGAGAGTGCTGCTGCCTGGCATCTCGGGG
AACACTCATGTTACCACGGGAGGCGCTGCCGCCACCAACACTCAGAGCGA
GGGTGGAGCAGGCCGCCGGCGAGGGGTGGCAACCACTGCTCCTACCCCCC
CGGGAAAAGGAAAAAACAAAGCGGCGGACGCGAAGCAACAACTGCAAGCC
ATCATGGCGGACCGCCGTTTTTCGGACGACACAGCAACAGCTACAGCAGA
CAGCATCGTCAACGTTGGCAACAGCGACGATAGCAATAGCGACAGCGACA
GATGA
back to top