EsuBft1109_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1109_3a-0001
Unique Name	EsuBft1109_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_527	contig	Scaffold_527:472503..477176 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FII4
ProteomeId	EsuBft1109_3
Protein domains	PR00450
Protein domains	IPR011992
Protein domains	IPR018247
Protein domains	PTHR10891
Protein domains	SSF47473
Protein domains	IPR002048
Owner	apollo_admin@sb-roscoff.fr
Note	calcineurin subunit b os:saccharomyces cerevisiae (strain atcc 204508 s288c) gn:cnb1 pe:1 sv:3 [Automatic annotation]
Nb exon	9
Max annot lvl	2759\|Eukaryota
Length	984
Hectar predicted targeting category	other localisation
Evalue	2.16e-199
EggNOG OGs	COG5126@1\|root,KOG0027@2759\|Eukaryota,KOG0034@2759\|Eukaryota
Ec32 ortholog description	C2 domain
Ec32 ortholog	Ec-28_000400.1
Date last modified	2016-06-13
Date creation	2016-06-13
KEGG rclass	RC00004,RC00037
KEGG ko	ko:K02183,ko:K06268,ko:K08193,ko:K13510
KEGG TC	2.A.1.14
KEGG Reaction	R01318,R03437,R03438,R09036
KEGG Pathway	ko00564,ko00565,ko01100,ko04010,ko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04310,ko04360,ko04370,ko04371,ko04380,ko04626,ko04650,ko04658,ko04659,ko04660,ko04662,ko04713,ko04720,ko04722,ko04724,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05014,ko05031,ko05034,ko05133,ko05152,ko05166,ko05167,ko05200,ko05214,ko05418,map00564,map00565,map01100,map04010,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04310,map04360,map04370,map04371,map04380,map04626,map04650,map04658,map04659,map04660,map04662,map04713,map04720,map04722,map04724,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05014,map05031,map05034,map05133,map05152,map05166,map05167,map05200,map05214,map05418
EC	2.3.1.23,2.3.1.67
Description	calcium ion binding
COG category	DTZ
BRITE	ko00000,ko00001,ko01000,ko01004,ko01009,ko02000,ko03036,ko04131,ko04147

Cross References

External references for this mRNA


Database	Accession
GO	0009405
GO	0006402
GO	0055074
GO	0034976
GO	0005509
GO	0044699
GO	0035690
GO	0044117
GO	0031505
GO	0070370

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1109_3a	EsuBft1109_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_527 472503..477176 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1109_3a-0001	EsuBft1109_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_527 472503..477176 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1109_3a-0001-exon	agat-exon-46290	Ectocarpus subulatus male Bft15b	exon	Scaffold_527 472503..472608 +
EsuBft1109_3a-0001-exon	agat-exon-46293	Ectocarpus subulatus male Bft15b	exon	Scaffold_527 472846..472952 +
EsuBft1109_3a-0001-exon	agat-exon-46287	Ectocarpus subulatus male Bft15b	exon	Scaffold_527 473582..473674 +
EsuBft1109_3a-0001-exon	agat-exon-46289	Ectocarpus subulatus male Bft15b	exon	Scaffold_527 473895..473954 +
EsuBft1109_3a-0001-exon	agat-exon-46286	Ectocarpus subulatus male Bft15b	exon	Scaffold_527 474382..474558 +
EsuBft1109_3a-0001-exon	EsuBft1109_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_527 475068..475139 +
EsuBft1109_3a-0001-exon	agat-exon-46291	Ectocarpus subulatus male Bft15b	exon	Scaffold_527 475725..475784 +
EsuBft1109_3a-0001-exon	agat-exon-46288	Ectocarpus subulatus male Bft15b	exon	Scaffold_527 476272..476457 +
EsuBft1109_3a-0001-exon	agat-exon-46292	Ectocarpus subulatus male Bft15b	exon	Scaffold_527 477054..477176 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1109_3a-0001-cds	EsuBft1109_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_527 472503..472608 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_527:472503..477176+
coding sequence from alignment at Scaffold_527:472503..477176+

spliced messenger RNA

>EsuBft1109_3a-0001 ID=EsuBft1109_3a-0001|Name=EsuBft1109_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=984bp|location=Sequence derived from alignment at Scaffold_527:472503..477176+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTGGGTGTCGAAAGGTTCCTTCAAAGGCGATTTGGAGATGCTGGA
CAAATCAGGAAACGGGGTCGGGAAGATCCACGTGGCCGTCAAGTTCGAGC
GACCAGGGCCAGGGCTGTCAGCAGGGCCGGTTGTTGCCACCGGAGCTAGG
CCAGCGGGAGCCCCCAAAGCCCAAGGCACGAGAGATCCCAACAGCAAGTT
CAGCGATGAGGAGATATGGGAGGCCTTCGTGGCGTTCGACCTCGACAAGA
ACAAGTTTGTCGGGGCGGCCGAGATTCGCCACGTGCTCGTCAACATCGGG
GAGCAGGTCACGGACGATGAGGTGGACGAGATGATCCGCATGGTGGACAA
GGACGGCGATGGACAGGTGTCCTTTACGGAGTTCTATGAGATGGTGACCG
GAGGAAACTCGCCCCCGCCAGGACTGGGGGGCACCGGCGGCGTAACCGCA
GGAGGTGGGGGCGCAACTGGCGGCGGAACGGCGCTAGCTACGACAGCACC
ATTGGGGCAGAACGTGGTACAGCAACGCAACAAAAAGAAGCAGGCTATGG
ACGACTTTGCAAGGGACAACAACATCAAGCCGGAGAGCATCAAGAAGGCT
TACAAGCGCTTCCAGGCTACGGACAAGGACTCCACGGGTATGATCGACTA
CACGGAGTTTTGCGAGATAATGCAGGTGGACCCTTCACCCCAGTGCGAAG
GGCTGTTCCAGCTGTTTGATGGCGACCGCTCGGGGCAGATCGACGTCAGA
GAGTTCATGATTTCTCTCACCAACTTCGCGGGTGCGAGTAAGGACGACAA
GCTCAAGTTCGCCTTTATGATCTTCGACGAGGATGGCAACGGGGTTATCA
CCAAACAAGAGTTGGCACGAATTTTGAAGGCCAACCACATGGCTCAGTCG
GAGGCCGAGGTCGCTCGAAAGACGGACACCATCATGGCTCAGGCAGACAA
GGACGGCGACGGAGTCGTTACTTTCGACGGTTAG

protein sequence of EsuBft1109_3a-0001

>EsuBft1109_3 ID=EsuBft1109_3|Name=EsuBft1109_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=327bp
MDWVSKGSFKGDLEMLDKSGNGVGKIHVAVKFERPGPGLSAGPVVATGAR
PAGAPKAQGTRDPNSKFSDEEIWEAFVAFDLDKNKFVGAAEIRHVLVNIG
EQVTDDEVDEMIRMVDKDGDGQVSFTEFYEMVTGGNSPPPGLGGTGGVTA
GGGGATGGGTALATTAPLGQNVVQQRNKKKQAMDDFARDNNIKPESIKKA
YKRFQATDKDSTGMIDYTEFCEIMQVDPSPQCEGLFQLFDGDRSGQIDVR
EFMISLTNFAGASKDDKLKFAFMIFDEDGNGVITKQELARILKANHMAQS
EAEVARKTDTIMAQADKDGDGVVTFDG

mRNA from alignment at Scaffold_527:472503..477176+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1109_3a-0001 ID=EsuBft1109_3a-0001|Name=EsuBft1109_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4674bp|location=Sequence derived from alignment at Scaffold_527:472503..477176+ (Ectocarpus subulatus male Bft15b)
ATGGATTGGGTGTCGAAAGGTTCCTTCAAAGGCGATTTGGAGATGCTGGA
CAAATCAGGAAACGGGGTCGGGAAGATCCACGTGGCCGTCAAGTTCGAGC
GACCAGGTAAGTTACAGTAGTGCATTGGTTGGTTGTACCCTCCTATAGCT
GGTGAGACTTCTTCGTCCTGTCGAGTTGTTCCAACACTCGTGGTTTAGCT
CTTCTGAGTAGCTCAATTTGTTCACAGCTTCTCAATGTTGGGATACAACC
TGGCCCACCCCCGATCGTTGTTCCGGCGTTGCCGTCCTCGATGTTCGGTT
TGGACCGATGGTACTTACTTCATCTTAGGAACGGCGGGGGCAGGGCCAGG
GCTGTCAGCAGGGCCGGTTGTTGCCACCGGAGCTAGGCCAGCGGGAGCCC
CCAAAGCCCAAGGCACGAGAGATCCCAACAGCAAGTTCAGCGATGAGGAG
GTGAGCGAACTACATGCACAAACACCAAATGGACACGCCAATTGATGTCT
CCAAAGAGTTCCATGGAATATCTGTGCAAATCTCTCGTTGTTCTTTTAAG
TCCCGTGCTCTACTCAACAAACCAACGGGAACAGGGAGAACTGCTTCACG
CTCTTTTTCCACAGATGGTACCAATCATGATCCATAGAACAGCAACTCCG
TCTGTTAGTGCTCCCGGAAACGGTTCTTTGCGTGGCTGCATCCGACGTCA
TGCATTTAGCTCGTGCCGCTTCATGTTCGGTCGAGCGACAGGAGCAAAAC
AACGACACTGATGAAGCATGTGATGACGGTGGCACCGATTCCCGCGTCAC
GATCAGTATTTATGACCAACCAAGACTCCCTGCGACCTTGTTAAGTTGCC
ACCCCCCAGTAAAAAACATATGTCAAGGGTGAAGGTCAGGTTTACGTAGA
AAATGTCATGGTGCTCTTTTTCAAAAACATTTTGTTAGCGGTGGGTCCTC
CCTACTTCTGATCAGTTTTTTTGCAGACGTTGAATCTAACAAGAAGGGGA
CACAGCTGCGTTTCCTTCCCTCGAATGAACGCCTAAAACCCGGTGCTGCG
ATGTATTTCCCGATCTTGTATCTTGGCAGATATGGGAGGCCTTCGTGGCG
TTCGACCTCGACAAGAACAAGTTTGTCGGGGCGGCCGAGATTCGCCACGT
GCTCGTCAACATCGGGGAGCAGGTAAAGTAGTGACTGTGGGTGTATGGCG
GGAGGTCCTTGGTATGGCGGTGCTGATCTAACCCGAAACAACCACTGAAG
GCTGAATGAAATCTCCATTTACATTTCCGGAAGAAAAACACTTATGGCAG
TCTTTATCTGATGTACCAACATGTGATTCTGAGAGCCTATTTGTACTTAC
TGCTGCGGTTTGTTGGTAAACGTGGTGTGTTGACTGCTTTAGGTCACGGA
CGATGAGGTGGACGAGATGATCCGCATGGTGGACAAGGACGGCGATGGAC
AGGTACTTTCGCAACCAACCCATGCAGTATTCATCCGCTAGCACGTGGAT
AGATTCAAAGGGCTGCGCTCTCCAATGCGCCCCCCAAGTATTGTTTCTTG
CGCACACTTGATGACCAATCGTATGAAATGATTTAGCGGGGCCACAGACG
AATTAAGTTGGAGTAAGGTCCCATTGATATTCAGTATCGTTACAGGTCAC
GCAGCAGGACGCACGCAAATATACCCCTTTCTCCTCTCGAACCCTAAGGT
AGGACGTCGATTGGCGGTTGGATAACGACCGATTCAGAGGTCGCTCGTAG
GATTGAGAACGTTATTAGGCGTGAAGACGATTGAAGTTGAAGAAGTAACA
TCGACAACAAGCGACAGCAACAGCTACCCCCTCTCGACTCACCTTAGTCC
ACCCCACCGCACCCCACCTCGCATCGAAGGTGTCCTTTACGGAGTTCTAT
GAGATGGTGACCGGAGGAAACTCGCCCCCGCCAGGACTGGGGGGCACCGG
CGGCGTAACCGCAGGAGGTGGGGGCGCAACTGGCGGCGGAACGGCGCTAG
CTACGACAGCACCATTGGGGCAGAACGTGGTACAGCAACGCAACAAAAAG
AAGCAGGTAGACATTGTTCCCACCGTGCTCATATCGTATCTTCTAAGGCC
CACAAGTCGGCTTGATTACAAGGGCAGAATCCCTCCTTAGATCAGGCATT
GGATTGACGACATGCACGATTTGACACTTCGTGCATGACTTTAAGGTAAT
GGGTTGATCGTGTTTTGCTTTTGTTGATAAACCCGTTGTTCGCGAGGTTG
TCTCGCCAAAACGAACGCGAGTCACGAAAGTGTGTTGGGGCGGCTGCCGA
GGAACTCAAATCTTCGGTTGCTTTAATGGAGAACAATCAAACAAGGACAT
CGGGGCCGACCTTACCGGCCCAAGCATATTTTGTGTCGGGTTGTACGTTA
GTAGATTGTGGCCGATACCTACAGCGAGAGAGTACTACCGATGTCCTGGG
CACTTGTGTACCCAGGTTTAAGCCGGTACTACGACACTAATTTATTGGGG
TTTCTGACCCATTCTAACCCCCCCTCCTGAACACGCACTTATTCCTGTCC
TCATCTGGGTTTAAGGCTATGGACGACTTTGCAAGGGACAACAACATCAA
GCCGGAGAGCATCAAGAAGGCTTACAAGCGCTTCCAGGTGAGATACAGGA
GGTCGTTTCGAGTTGGTCAATGTCTCACAATGTATGCATTTAGTTTCTGG
ATGCAGCGTCTGATCGACCGCTATCCATGTTAGTTCTAGTTCCTTTGAAC
GCATCACAGAAACTTGCAACACCGGATATAGCTCCATTTCAACCTATTCA
ATCATGGCCTGCTGATAACGCGCGGTGTCGTCGTAGACCATGCGCGTCCT
CCTCTGAATCATCATCTGTCGCGGTTTTGGTTGCCGTTTTCCCCTACCAG
GAACGAACCCCGCGCTCATGTTATTTCTGGTGGTATTCATGCCAACACAC
ATCTCCACGGTGACGCATCATGGTGGCACGGCTCGATGATTGGTTCCATA
TTCTTCATTTAGTACCAGTGCCAGGCCATTCGTTCGAAAAATGCCAGTAT
AGGAGACTCAAAGCTAGAAGGGTTCACACAGGAAGTTTTGGAGTGGCCGA
GAAGTTTATTGTGCACATAGGCCATAGACTTCCGCGCGAGATCTGGCAAA
CATGAAGCACAGGTGTTCAGCGACTTCGTCACCCACCCCCTGCCGCGCCG
TAATAATCCTTAATCCATCCAGGCTACGGACAAGGACTCCACGGGTATGA
TCGACTACACGGAGTTTTGCGAGATAATGCAGGTCGGTATAGCATTTTGT
CGGACGGCATTCATTATTGAAACACAATTGTAGATAATTTCACATGGTTC
TATTGTAGTCGTGGCCGTCGTCGTTCGATAAATACTCTCCTTGGTGTTTG
CCACTTTCCGGTCTCAATCGAAACCAAGCGCACTGATTATTTTGACAGAA
ACTCTTTCGGTGGAATTATGACACCCTGCGTGCTATTTTCTAACGCAGTC
GTTTTGTGGTTCAATATGTCGAAGAACAACTGGCTCCTGCGGTGCCTGAC
CCCAGATTACATGCCGCGCTACTTGTGGCTTGTTGTCGTTCGCTCCTGAC
TGAGTGGCCACGAAGCCGTTAGCGCAGTTGTCCACAACGTTTTTGTGGCC
GTTATGACCGTGATGCTTCATCCATGGAGTAGTCTAGGCTGTAAGTTGTC
GCTGTTTGAGATATTGACACTTTGGGTTGTGATGGGCGTGTGCCATGCAA
CTGCCGCCGCGCGAAACAGGTGGACCCTTCACCCCAGTGCGAAGGGCTGT
TCCAGCTGTTTGATGGCGACCGCTCGGGGCAGATCGACGTCAGAGAGTTC
ATGATTTCTCTCACCAACTTCGCGGGTGCGAGTAAGGACGACAAGCTCAA
GTTCGCCTTTATGATCTTCGACGAGGATGGCAACGGGGTTATCACCAAAC
AAGAGGTACATGGTACAATAGGAAAGGTCGAGCTTCCCACCGTTCTGCTC
TAAACGTTCCCTGCAAATGGAAACCTCGAAGCGTTTCTCGGCGAAAGGTT
GGGTAGATCGGCGTGTCCTTCATCTATTAAAACGTGTTCGAGATTGGACC
CAGGCCGCACATCTAGTTACTACAAAATTTAGTGCCGTTTCGCTTCTTGT
GTTTGCACCTGTTCATGTAACTTAATCTGCCACCAAATCAGGACGATGTC
CTGGGGAAGGATTGAGGTTTTCAAGAAATGTCATGACTTGAAAGAACAAT
GCGCGTGCCTCCGCCCTCAAGGGTTCTGTTACATACAGCACAAAGCACGA
CAAATGCAACACATTGTTGTGCGAAGAAACGTAGGAGACTTTGCCTGTCT
CCTACGTAGGCCCAAGGCCATGTAAATTGATTACGAATGAAATGTAGAAC
GTCACACACAAGCATTCCTAGAGCACACGAATGTGTACCAGTGCTATCTT
GCAGTAGTTACAGCGGAGGGAGTGCTTGATACTCCCCTTTGATATGGACG
TTGCTGCCCCCGCCCTGTTGCCCCCACGCTATGTATTGTCGCTCGGCACA
GTTGGCACGAATTTTGAAGGCCAACCACATGGCTCAGTCGGAGGCCGAGG
TCGCTCGAAAGACGGACACCATCATGGCTCAGGCAGACAAGGACGGCGAC
GGAGTCGTTACTTTCGACGGTTAG

Coding sequence (CDS) from alignment at Scaffold_527:472503..477176+

>EsuBft1109_3a-0001 ID=EsuBft1109_3a-0001|Name=EsuBft1109_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=984bp|location=Sequence derived from alignment at Scaffold_527:472503..477176+ (Ectocarpus subulatus male Bft15b)
ATGGATTGGGTGTCGAAAGGTTCCTTCAAAGGCGATTTGGAGATGCTGGA
CAAATCAGGAAACGGGGTCGGGAAGATCCACGTGGCCGTCAAGTTCGAGC
GACCAGGGCCAGGGCTGTCAGCAGGGCCGGTTGTTGCCACCGGAGCTAGG
CCAGCGGGAGCCCCCAAAGCCCAAGGCACGAGAGATCCCAACAGCAAGTT
CAGCGATGAGGAGATATGGGAGGCCTTCGTGGCGTTCGACCTCGACAAGA
ACAAGTTTGTCGGGGCGGCCGAGATTCGCCACGTGCTCGTCAACATCGGG
GAGCAGGTCACGGACGATGAGGTGGACGAGATGATCCGCATGGTGGACAA
GGACGGCGATGGACAGGTGTCCTTTACGGAGTTCTATGAGATGGTGACCG
GAGGAAACTCGCCCCCGCCAGGACTGGGGGGCACCGGCGGCGTAACCGCA
GGAGGTGGGGGCGCAACTGGCGGCGGAACGGCGCTAGCTACGACAGCACC
ATTGGGGCAGAACGTGGTACAGCAACGCAACAAAAAGAAGCAGGCTATGG
ACGACTTTGCAAGGGACAACAACATCAAGCCGGAGAGCATCAAGAAGGCT
TACAAGCGCTTCCAGGCTACGGACAAGGACTCCACGGGTATGATCGACTA
CACGGAGTTTTGCGAGATAATGCAGGTGGACCCTTCACCCCAGTGCGAAG
GGCTGTTCCAGCTGTTTGATGGCGACCGCTCGGGGCAGATCGACGTCAGA
GAGTTCATGATTTCTCTCACCAACTTCGCGGGTGCGAGTAAGGACGACAA
GCTCAAGTTCGCCTTTATGATCTTCGACGAGGATGGCAACGGGGTTATCA
CCAAACAAGAGTTGGCACGAATTTTGAAGGCCAACCACATGGCTCAGTCG
GAGGCCGAGGTCGCTCGAAAGACGGACACCATCATGGCTCAGGCAGACAA
GGACGGCGACGGAGTCGTTACTTTCGACGGTTAG