EsuBft1109_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1109_2a-0001
Unique NameEsuBft1109_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_527contigScaffold_527:478400..481013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog634956.Geoth_1966
ProteomeIdEsuBft1109_2
Protein domainsCoil
Protein domainsIPR016181
Protein domainsIPR000182
Ownerapollo_admin@sb-roscoff.fr
NoteUncharacterized protein YqjY OS:Bacillus subtilis (strain 168) GN:yqjY PE:1 SV:1 [Automatic annotation]
Nb exon2
Max annot lvl91061|Bacilli
Length1095
Hectar predicted targeting categoryother localisation
Evalue6.6e-33
EggNOG OGsCOG0454@1|root,COG0456@2|Bacteria,1V50M@1239|Firmicutes,4HH63@91061|Bacilli,1WFW2@129337|Geobacillus
Ec32 ortholog descriptionAcetyltransferase (GNAT) domain protein
Ec32 orthologEc-28_000410.1
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameyqjY
KEGG koko:K06977
GOsGO:0003674,GO:0003824,GO:0006464,GO:0006473,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0016746,GO:0016747,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564
DescriptionAcetyltransferase (GNAT) domain
COG categoryK
BRITEko00000
Cross References
External references for this mRNA
DatabaseAccession
GO0008080
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1109_2aEsuBft1109_2aEctocarpus subulatus male Bft15bgeneScaffold_527 478400..481013 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1109_2a-0001-exonagat-exon-46285Ectocarpus subulatus male Bft15bexonScaffold_527 478400..479038 -
EsuBft1109_2a-0001-exonEsuBft1109_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_527 480558..481013 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1109_2a-0001-exonagat-three_prime_utr-1023Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_527 478400..478663 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1109_2a-0001-cdsEsuBft1109_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_527 478664..479038 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1109_2a-0001-exonagat-five_prime_utr-644Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_527 480885..481013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1109_2a-0001EsuBft1109_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_527 478664..480884 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1109_2a-0001 ID=EsuBft1109_2a-0001|Name=EsuBft1109_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1095bp|location=Sequence derived from alignment at Scaffold_527:478400..481013- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTGCTGTGCTTGTGCTGGCTGACTGTAGCAAACATCGGCGCCTTTAGTCC
AGTCATATCCGCAGTCCGGCAGCGAAAAGCGATTCTCAGGCAGCAGCGGC
GTTCGCGGAGTCCTTCTCAGGAATCGATCATGATGTGCTGCTCATCACAG
GACGTTGACGCGTGCAGCCGCCGCTACAGAGTGAGGACGTGTTCCGGCAG
CGAGGACTACTCGGCGGTGATCGGCCTCGTCGACGCTTGGTGGGGGGGAA
GACGAGTGTCGCCGATGCTGCCCCGGCTTTTCTTCGATAATTTCTGCGAC
ACTACCTTCATGGCGGTCATCAGGGACGAAGAAGCACAAAAAGCGGAAGC
ACAAATCGCGGAAGCACAACAAGCGGACGCGGCAGACACGACACAGAGGG
ACGAAGTTATTGTGGGGTTCCTCTGTGGATTCGTCTCCCAGTCTAGGGCG
GGAGAGGCGCACGCTCATTTCATCGGCATCGACCCTGCTCACAGAGGGGC
GGGGCTAGGGGCGCTTCTTTACGATCAGTTCTTTAAGGCGGTCCAGACTC
ATGGCTGCACCCTAGTTCATGCCGTGACTAGCCCTGCTAATACCGCATCT
GTGGCGTTCCACAAGGCGATCGGCTTCGAAGCAGTACCCGCTATTGCGCC
CGATGCAGAAGGTGACGAGAGAACGGGGGGGACTGGAAAGGCGAGATCGA
GCTCAGGAGCGTCGGAGCATCGTTTCTTGAGTGAACACAGCGGAAGAGTC
CCTGTTGATAGAGAGCTTGTACACCTCGACTATGATGGCCCGGACGATGG
GGACAGAGTCGTTCTCGAGAAGCGTTTGTGAACTGCATTGACTGGTGTTG
TACGTGCCGAAGCCGCACGCCGTAGATCAGTTTAGTCGAGGCGAACGAAA
GCGGCACAGGAACTAGTAAGGCGTGCAACAACCCATGGGTCTAGTGCTAG
TCCCACTGAGGGAGGCACGGGGGTCGTCGAGCTCACTCAAGGAGGGGTGC
CGTAGAAGTAGTGTGTGGTGCTTGCGCTTTGCCCTCCGAAAACATACCCG
AAGAATCGTGAGCAATGTGCGGAATCTCGTCTGTCCACTCAATGC
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protein sequence of EsuBft1109_2a-0001

>EsuBft1109_2 ID=EsuBft1109_2|Name=EsuBft1109_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=233bp
MMCCSSQDVDACSRRYRVRTCSGSEDYSAVIGLVDAWWGGRRVSPMLPRL
FFDNFCDTTFMAVIRDEEAQKAEAQIAEAQQADAADTTQRDEVIVGFLCG
FVSQSRAGEAHAHFIGIDPAHRGAGLGALLYDQFFKAVQTHGCTLVHAVT
SPANTASVAFHKAIGFEAVPAIAPDAEGDERTGGTGKARSSSGASEHRFL
SEHSGRVPVDRELVHLDYDGPDDGDRVVLEKRL
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mRNA from alignment at Scaffold_527:478400..481013-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1109_2a-0001 ID=EsuBft1109_2a-0001|Name=EsuBft1109_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2614bp|location=Sequence derived from alignment at Scaffold_527:478400..481013- (Ectocarpus subulatus male Bft15b)
CTGCTGTGCTTGTGCTGGCTGACTGTAGCAAACATCGGCGCCTTTAGTCC
AGTCATATCCGCAGTCCGGCAGCGAAAAGCGATTCTCAGGCAGCAGCGGC
GTTCGCGGAGTCCTTCTCAGGAATCGATCATGATGTGCTGCTCATCACAG
GACGTTGACGCGTGCAGCCGCCGCTACAGAGTGAGGACGTGTTCCGGCAG
CGAGGACTACTCGGCGGTGATCGGCCTCGTCGACGCTTGGTGGGGGGGAA
GACGAGTGTCGCCGATGCTGCCCCGGCTTTTCTTCGATAATTTCTGCGAC
ACTACCTTCATGGCGGTCATCAGGGACGAAGAAGCACAAAAAGCGGAAGC
ACAAATCGCGGAAGCACAACAAGCGGACGCGGCAGACACGACACAGAGGG
ACGAAGTTATTGTGGGGTTCCTCTGTGGATTCGTCTCCCAGTCTAGGGCG
GGAGAGGTAGGTAGCCAAGGGCATTGTCCGCACACCTCAATCTTTGGCAA
GCCTGTTTTCCTTTCGCCTTGCGCATGCAGCTCTCTTTGTGTATTGACCA
ACAAGAGGACAGCTCGGGTACGTCCGTAGTGAACGGAGTCCCAACTAACT
TGGGTTTGTTCGTGTACGGAAATGCACTGGCTCTTTCTCTTGGTAAGCAA
TTCAACGCTGAGCACGCTGTCTTCGTGCCTCCGAGAACGGAGTGGGTTCT
TGGGTGTTTAAATGAGAAGGAGGTGGTTAAAAGACAAGGGGAAACATTTG
TGTTCGAATTCAACGTATTGGACACGTGTCGACGGAGAGAACGGCAATAC
GGAGGATAAATGTAAACGATGTAGACAACACTCTAAAACACATCAAGTTA
TTGGAAATCAGTGCCCACGGTAACAGCAGCGTCGAGATCCAAGTGAGTGA
AGTAGTCCGGAAAAAGGGGTAGATGATCCAAACCATCATTTGGGCTTGGC
TGCGAGTTTATTATTGGTTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCTG
CTATCCTGCATGCCAATAAGTAAACCGGCGGTGTGGAAGGGCACGGCCGA
AACAAAAAATGACGTGGACGGTATGATGTATGTCGTCGCAGAACGTTGAC
AATTGATGGCAAGCACCCAAGAGGAGCCGGAAAGCGGGGGGTGCACAGGG
AAGAAAATAACAATTTTCTGTTCAAGGAAATTTACATGCGAAGGGTAGGG
AAGAGGGGTGTTACTGGATAACGGTCAAAGTGTTGGTGCATCTGTGGGGT
AGCACTAGGTATATTTGTGTATGGGCATCGCATTCCGTTGCGTGAGCGAT
CCATGAAAAACTTTGACTTTTCGTTGGCGATGTGTGGGGTAGCGTAAGGT
TTTTTTGTGTATGGGCGTCGTACTAGCGTTGCGTGAGCGCTCTATGAAAA
ACTTTGACTCTCCGTTGGCGATGATGTCTTAAGGTGTACCTGCCTTCTGT
TCCCACTCCATGCGAACGATTATCTGACCTGGTCAAAACAACAACTACAA
AATAGTGTAATTCCCTCGCAGCAAGGAGTAGCGGACCTGCTCCCTCCCCA
TTTTAATTGTAACAATATGGCGTCGTCGACAGGACACCAAGCTACGCGTG
AAATCGCAACGGGTTTGCGATCCCCATTCTCTGAACCACTTAGGCACGAC
AACAACAACAACAACAACAACAACAACATTACGTCTGCAGTAGTTTCGTT
CTATTTGTTTGCCGATCTATGCCACGGTCTGTGCATGACTGTCAAGGTCG
TTCGCTCTCTGTGGGGCGACTAATAGTATAACCATGCGTCATGCTCATTG
ACTACACTGGCACCGGCCGGGGGAGCCTGATGACTACTGTAGAAACCGTG
TGGCGCTAGTCTGTCCGATGTGAGATCGCACATACTACGTATGGGGGTGA
AATCTAACGAAATGCGCACAGTACGGCTTTCCCACCTCTCCTCTATTTTT
GTTTCGGAATTTATATGTTGTTCAGGCGCACGCTCATTTCATCGGCATCG
ACCCTGCTCACAGAGGGGCGGGGCTAGGGGCGCTTCTTTACGATCAGTTC
TTTAAGGCGGTCCAGACTCATGGCTGCACCCTAGTTCATGCCGTGACTAG
CCCTGCTAATACCGCATCTGTGGCGTTCCACAAGGCGATCGGCTTCGAAG
CAGTACCCGCTATTGCGCCCGATGCAGAAGGTGACGAGAGAACGGGGGGG
ACTGGAAAGGCGAGATCGAGCTCAGGAGCGTCGGAGCATCGTTTCTTGAG
TGAACACAGCGGAAGAGTCCCTGTTGATAGAGAGCTTGTACACCTCGACT
ATGATGGCCCGGACGATGGGGACAGAGTCGTTCTCGAGAAGCGTTTGTGA
ACTGCATTGACTGGTGTTGTACGTGCCGAAGCCGCACGCCGTAGATCAGT
TTAGTCGAGGCGAACGAAAGCGGCACAGGAACTAGTAAGGCGTGCAACAA
CCCATGGGTCTAGTGCTAGTCCCACTGAGGGAGGCACGGGGGTCGTCGAG
CTCACTCAAGGAGGGGTGCCGTAGAAGTAGTGTGTGGTGCTTGCGCTTTG
CCCTCCGAAAACATACCCGAAGAATCGTGAGCAATGTGCGGAATCTCGTC
TGTCCACTCAATGC
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Coding sequence (CDS) from alignment at Scaffold_527:478400..481013-

>EsuBft1109_2a-0001 ID=EsuBft1109_2a-0001|Name=EsuBft1109_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=702bp|location=Sequence derived from alignment at Scaffold_527:478400..481013- (Ectocarpus subulatus male Bft15b)
ATGATGTGCTGCTCATCACAGGACGTTGACGCGTGCAGCCGCCGCTACAG
AGTGAGGACGTGTTCCGGCAGCGAGGACTACTCGGCGGTGATCGGCCTCG
TCGACGCTTGGTGGGGGGGAAGACGAGTGTCGCCGATGCTGCCCCGGCTT
TTCTTCGATAATTTCTGCGACACTACCTTCATGGCGGTCATCAGGGACGA
AGAAGCACAAAAAGCGGAAGCACAAATCGCGGAAGCACAACAAGCGGACG
CGGCAGACACGACACAGAGGGACGAAGTTATTGTGGGGTTCCTCTGTGGA
TTCGTCTCCCAGTCTAGGGCGGGAGAGGCGCACGCTCATTTCATCGGCAT
CGACCCTGCTCACAGAGGGGCGGGGCTAGGGGCGCTTCTTTACGATCAGT
TCTTTAAGGCGGTCCAGACTCATGGCTGCACCCTAGTTCATGCCGTGACT
AGCCCTGCTAATACCGCATCTGTGGCGTTCCACAAGGCGATCGGCTTCGA
AGCAGTACCCGCTATTGCGCCCGATGCAGAAGGTGACGAGAGAACGGGGG
GGACTGGAAAGGCGAGATCGAGCTCAGGAGCGTCGGAGCATCGTTTCTTG
AGTGAACACAGCGGAAGAGTCCCTGTTGATAGAGAGCTTGTACACCTCGA
CTATGATGGCCCGGACGATGGGGACAGAGTCGTTCTCGAGAAGCGTTTGT
GA
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