EsuBft1106_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1106_3a-0001
Unique NameEsuBft1106_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_210contigScaffold_210:32309..35753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft1106_3
Protein domainsSSF56672
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noterna-directed dna polymerase from mobile element jockey os:drosophila funebris gn:jockey\pol pe: [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length2139
Evalue1.18e-86
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0006259
EC3.1
GO0004518
GO0016740
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1106_3aEsuBft1106_3aEctocarpus subulatus male Bft15bgeneScaffold_210 32309..35753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1106_3a-0001EsuBft1106_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_210 32309..35753 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1106_3a-0001-exonagat-exon-91466Ectocarpus subulatus male Bft15bexonScaffold_210 32309..32319 +
EsuBft1106_3a-0001-exonEsuBft1106_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_210 32623..32809 +
EsuBft1106_3a-0001-exonagat-exon-91467Ectocarpus subulatus male Bft15bexonScaffold_210 32924..33005 +
EsuBft1106_3a-0001-exonagat-exon-91464Ectocarpus subulatus male Bft15bexonScaffold_210 33219..33541 +
EsuBft1106_3a-0001-exonagat-exon-91468Ectocarpus subulatus male Bft15bexonScaffold_210 33633..34562 +
EsuBft1106_3a-0001-exonagat-exon-91465Ectocarpus subulatus male Bft15bexonScaffold_210 35148..35753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1106_3a-0001-cdsEsuBft1106_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_210 32309..32319 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1106_3a-0001 ID=EsuBft1106_3a-0001|Name=EsuBft1106_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2139bp|location=Sequence derived from alignment at Scaffold_210:32309..35753+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGACGTGGCCGGAGTTCACCAGGCANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT
AGACGTACGAGCAGCAGGGGACTGGGTGATNTTCGACTACGTCCTGGTAG
ATAGGGGGAGGACAGATCCCAGAGCTGCATGGGACTGGGTGATTGAAGGG
TGGGAGTCCATCGTGAACGCAACGGCAGAGAGAGTAGTGGGAAGGAAGGT
GGTACGATGTGGGGTATCGGTTAAGTGGTGGGATGACGAGCTGAAAGAAG
AAATAGGGGAACGTAGAGAAGTCTTCAAGCAGTACCTGAGTGAGGCGTCT
GAGGAGAGTTGGGAAAAGTACAGGGCCAAGAGAAAACAGGTGAAGGGACT
AGTGAGAAAGAAGAAAAAGTGTATTTGGGACCAAGTAGTGCAGAAGGCCA
ACGGAGGCCTGGAGGGAAACGTCAAGCAGATGTGGGAAGGGATTAGTGGA
ATGGACACTACTCGAGACTTGGAGTGCCCTCAGAAAAAGAAGCTTTTGAC
CAACCAAGTGTTCAAGAAGGAGGTGGACGCATGGGCCCAGAAAGAAGAAG
AGACATCGAAGGCAGACGTTGGGAACGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAGAAATGGGTTGTGGAAAC
AACTGTGTGTGGTCCAAATACGGGATCAAGAGGAAAATGTGGCGAGTGCT
GAAGAAGACGACAGAGTGTACGAAAGGCGCGGTCATGTTAGACGGAGAAC
TGTCTAAATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTG
TCCCCAACATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGA
GGCAGTCCGGAAGGGAGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAG
GAATGCTGTTTGCGGATGATTTTGTCGGTATGTCGGACACCCCTGAGGGA
CTGCAACTGCAATTTGACGCGGCGACAAAGTTTACTGGTAAGTGGAGATT
GTCTGCCAACGTTAAGAAGAGTGCCGTCATGGTATGCAACGAGAACAAGG
AGGAACCAGTAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTA
GTGGACCAGTACACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTG
GAATGCACACATGTTCAAAGTAGCGGAAAAGGGCAAAGCAAGAGCAGGGA
AGCTGCACCCAATACTCGCNGTCCACACATACCTCGGAGTAGAGATCGCA
AAAGACTGCTCGTGGAATGCATACATGTCCAAGAATCTAAAGGAAGAATC
CAAGGATAAGGAGGGTCTAGAAGTGCAGGGAATGTTGAAGGAAGGAATAG
GGTTCAAGGACTACCTACATGGACCAATGGATGCAGGAACAAAGCTTAAG
GTCAAATTCAGGACCGGGGACATGGACCTCCGAGAACGCCGACGAAGACA
TAGGACGGTAGACGACGAAGACGACGAGTTCAAATGTGATTGCGGCTTCG
AATGCGAAGACCGTGTTCATGTAGTCGCGGAATGTCCGTGGTACAAGAAG
GAGAGGGAAGTGTACGTGACTGAGCTGGGAAAAATAGATGGAACGTACAG
GGAGATGTTTGAGGCATGGAATAGAGAGGAAAGGACGGTAGCTGTACTGG
GGCATAGGAGGTGGGTTGAAAAGGCGGGAAGGGATATCGTTAGGATAGAC
AGACTAGGGAAGACATTTTTGAGCCACCTTTGGCAAAGTAGAAAGGAACG
ATTGGCCATCGGTGATCGGTCCTGTGGGAACAATGCTCCGTCCTCTCGAG
GACGCGTGGTCAATGGTCTAACCGCTAAGGCATGCAAAACACCTGAGTAC
GTCCTCCTCCCCGGGAGGCGGGAGAAATTCGAAAAGTGA
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protein sequence of EsuBft1106_3a-0001

>EsuBft1106_3 ID=EsuBft1106_3|Name=EsuBft1106_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=712bp
MGTWPEFTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXVDVRAAGDWVXFDYVLVDRGRTDPRAAWDWVIEG
WESIVNATAERVVGRKVVRCGVSVKWWDDELKEEIGERREVFKQYLSEAS
EESWEKYRAKRKQVKGLVRKKKKCIWDQVVQKANGGLEGNVKQMWEGISG
MDTTRDLECPQKKKLLTNQVFKKEVDAWAQKEEETSKADVGNXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEMGCGN
NCVWSKYGIKRKMWRVLKKTTECTKGAVMLDGELSKFFDIEQGVPQGCTL
SPTLFQVFINDLLEVVEAVRKGVKVGDTETSVSGMLFADDFVGMSDTPEG
LQLQFDAATKFTGKWRLSANVKKSAVMVCNENKEEPVEHRWKWGIEEIAV
VDQYTYLGVEIAKDCSWNAHMFKVAEKGKARAGKLHPILAVHTYLGVEIA
KDCSWNAYMSKNLKEESKDKEGLEVQGMLKEGIGFKDYLHGPMDAGTKLK
VKFRTGDMDLRERRRRHRTVDDEDDEFKCDCGFECEDRVHVVAECPWYKK
EREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRID
RLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTPEY
VLLPGRREKFEK
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mRNA from alignment at Scaffold_210:32309..35753+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1106_3a-0001 ID=EsuBft1106_3a-0001|Name=EsuBft1106_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3445bp|location=Sequence derived from alignment at Scaffold_210:32309..35753+ (Ectocarpus subulatus male Bft15b)
ATGGGGACGTGGTAAGCAAACTAGGGANNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGG ACAGGCGATCGGGCAGCACGGAGAAGACAAAGTGAATGACAACGGAGTGA GGATGCTTGAATTCTTGGCAACGAACTGCCTGATGGTGTTGAACGGTAGG AGGGAATGCGATAGGCCGGAGTTCACCAGGCANNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NGTAAGAAACAGAGGAAAGTGTTCCGGTGGAAAGTAGAGCGTTTGGGAGA CGAGGGGTCTGGCTGGTACTGTAGAACCCTTCAGGAAACTTCCGAGGAGC GTCGGAGACGGACAGGTAGACGTACGAGCAGCAGGGGACTGGGTGATNTT CGACTACGTCCTGGTAGATAGGGGGAGGACAGATCCCAGAGCTGCATGTA AGTGCGATGGTTATAGGTTCGACCGACCACTTCCTCATATGGGCAAACAA ACATCGACCGATCTAGAAAGATGGAAAGTAAGAAGCAGAGGAAAGTGTTC CGGTGGAAAGTAGAGCGTTTGGGAGACGAGGGGACTGGCTGGTAGTGTAG AACCCTTCAGGAAACTTCCGAGAAGCGTCGGAGACGGACAGGTAGACGTA CGAGCAGCAGGGGACTGGGTGATTGAAGGGTGGGAGTCCATCGTGAACGC AACGGCAGAGAGAGTAGTGGGAAGGAAGGTGGTACGATGTGGGGTATCGG TTAAGTGGTGGGATGACGAGCTGAAAGAAGAAATAGGGGAACGTAGAGAA GTCTTCAAGCAGTACCTGAGTGAGGCGTCTGAGGAGAGTTGGGAAAAGTA CAGGGCCAAGAGAAAACAGGTGAAGGGACTAGTGAGAAAGAAGAAAAAGT GTATTTGGGACCAAGTAGTGCAGAAGGCCAACGGAGGCCTGGAGGGAAAC GTCAAGCAGATGTGGGAAGGGATTAGTGGAATGGTAAAAAAGACCGCGTA AGGGGTAGCAACTTTGCGAGGTGTGAACGGTGGATTGGTCAGCAATGGGA AGGGAAAGAGGGGAGTTCTAGCAGGACACTACTCGAGACTTGGAGTGCCC TCAGAAAAAGAAGCTTTTGACCAACCAAGTGTTCAAGAAGGAGGTGGACG CATGGGCCCAGAAAGAAGAAGAGACATCGAAGGCAGACGTTGGGAACGNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT GGAGAAATGGGTTGTGGAAACAACTGTGTGTGGTCCAAATACGGGATCAA GAGGAAAATGTGGCGAGTGCTGAAGAAGACGACAGAGTGTACGAAAGGCG CGGTCATGTTAGACGGAGAACTGTCTAAATTCTTCGACATTGAGCAGGGG GTCCCACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAA CGATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAAAAGTAGGGG ACACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGGATGATTTTGTCGGT ATGTCGGACACCCCTGAGGGACTGCAACTGCAATTTGACGCGGCGACAAA GTTTACTGGTAAGTGGAGATTGTCTGCCAACGTTAAGAAGAGTGCCGTCA TGGTATGCAACGAGAACAAGGAGGAACCAGTAGAACATAGATGGAAGTGG GGGATCGAGGAGATTGCAGTAGTGGACCAGTACACATACCTCGGAGTAGA GATCGCAAAAGACTGCTCGTGGAATGCACACATGTTCAAAGTAGCGGAAA AGGGCAAAGCAAGAGCAGGGAAGCTGCACCCAATACTCGCNGTCCACACA TACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCATACATGTC CAAGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNGCGCACAAGTAATGCAGTCACCAGGGC AGAATTGGGGATCCAATCCCTACGGTCGGGAAGAGACGCGAGGAAGCTGA CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGC TCGACATCGACGAAGATCAATGAAACGCTGGAAAAGGATGGTCTACAGGG TTCAAGGAGATATCTGTTGCTTGTGCCGAGAGAGAACAGAATCTAAAGGA AGAATCCAAGGATAAGGAGGGTCTAGAAGTGCAGGGAATGTTGAAGGAAG GAATAGGGTTCAAGGACTACCTACATGGACCAATGGATGCAGGAACAAAG CTTAAGGTCAAATTCAGGACCGGGGACATGGACCTCCGAGAACGCCGACG AAGACATAGGACGGTAGACGACGAAGACGACGAGTTCAAATGTGATTGCG GCTTCGAATGCGAAGACCGTGTTCATGTAGTCGCGGAATGTCCGTGGTAC AAGAAGGAGAGGGAAGTGTACGTGACTGAGCTGGGAAAAATAGATGGAAC GTACAGGGAGATGTTTGAGGCATGGAATAGAGAGGAAAGGACGGTAGCTG TACTGGGGCATAGGAGGTGGGTTGAAAAGGCGGGAAGGGATATCGTTAGG ATAGACAGACTAGGGAAGACATTTTTGAGCCACCTTTGGCAAAGTAGAAA GGAACGATTGGCCATCGGTGATCGGTCCTGTGGGAACAATGCTCCGTCCT CTCGAGGACGCGTGGTCAATGGTCTAACCGCTAAGGCATGCAAAACACCT GAGTACGTCCTCCTCCCCGGGAGGCGGGAGAAATTCGAAAAGTGA
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Coding sequence (CDS) from alignment at Scaffold_210:32309..35753+

>EsuBft1106_3a-0001 ID=EsuBft1106_3a-0001|Name=EsuBft1106_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2139bp|location=Sequence derived from alignment at Scaffold_210:32309..35753+ (Ectocarpus subulatus male Bft15b)
ATGGGGACGTGGCCGGAGTTCACCAGGCANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT
AGACGTACGAGCAGCAGGGGACTGGGTGATNTTCGACTACGTCCTGGTAG
ATAGGGGGAGGACAGATCCCAGAGCTGCATGGGACTGGGTGATTGAAGGG
TGGGAGTCCATCGTGAACGCAACGGCAGAGAGAGTAGTGGGAAGGAAGGT
GGTACGATGTGGGGTATCGGTTAAGTGGTGGGATGACGAGCTGAAAGAAG
AAATAGGGGAACGTAGAGAAGTCTTCAAGCAGTACCTGAGTGAGGCGTCT
GAGGAGAGTTGGGAAAAGTACAGGGCCAAGAGAAAACAGGTGAAGGGACT
AGTGAGAAAGAAGAAAAAGTGTATTTGGGACCAAGTAGTGCAGAAGGCCA
ACGGAGGCCTGGAGGGAAACGTCAAGCAGATGTGGGAAGGGATTAGTGGA
ATGGACACTACTCGAGACTTGGAGTGCCCTCAGAAAAAGAAGCTTTTGAC
CAACCAAGTGTTCAAGAAGGAGGTGGACGCATGGGCCCAGAAAGAAGAAG
AGACATCGAAGGCAGACGTTGGGAACGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAGAAATGGGTTGTGGAAAC
AACTGTGTGTGGTCCAAATACGGGATCAAGAGGAAAATGTGGCGAGTGCT
GAAGAAGACGACAGAGTGTACGAAAGGCGCGGTCATGTTAGACGGAGAAC
TGTCTAAATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTG
TCCCCAACATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGA
GGCAGTCCGGAAGGGAGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAG
GAATGCTGTTTGCGGATGATTTTGTCGGTATGTCGGACACCCCTGAGGGA
CTGCAACTGCAATTTGACGCGGCGACAAAGTTTACTGGTAAGTGGAGATT
GTCTGCCAACGTTAAGAAGAGTGCCGTCATGGTATGCAACGAGAACAAGG
AGGAACCAGTAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTA
GTGGACCAGTACACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTG
GAATGCACACATGTTCAAAGTAGCGGAAAAGGGCAAAGCAAGAGCAGGGA
AGCTGCACCCAATACTCGCNGTCCACACATACCTCGGAGTAGAGATCGCA
AAAGACTGCTCGTGGAATGCATACATGTCCAAGAATCTAAAGGAAGAATC
CAAGGATAAGGAGGGTCTAGAAGTGCAGGGAATGTTGAAGGAAGGAATAG
GGTTCAAGGACTACCTACATGGACCAATGGATGCAGGAACAAAGCTTAAG
GTCAAATTCAGGACCGGGGACATGGACCTCCGAGAACGCCGACGAAGACA
TAGGACGGTAGACGACGAAGACGACGAGTTCAAATGTGATTGCGGCTTCG
AATGCGAAGACCGTGTTCATGTAGTCGCGGAATGTCCGTGGTACAAGAAG
GAGAGGGAAGTGTACGTGACTGAGCTGGGAAAAATAGATGGAACGTACAG
GGAGATGTTTGAGGCATGGAATAGAGAGGAAAGGACGGTAGCTGTACTGG
GGCATAGGAGGTGGGTTGAAAAGGCGGGAAGGGATATCGTTAGGATAGAC
AGACTAGGGAAGACATTTTTGAGCCACCTTTGGCAAAGTAGAAAGGAACG
ATTGGCCATCGGTGATCGGTCCTGTGGGAACAATGCTCCGTCCTCTCGAG
GACGCGTGGTCAATGGTCTAACCGCTAAGGCATGCAAAACACCTGAGTAC
GTCCTCCTCCCCGGGAGGCGGGAGAAATTCGAAAAGTGA
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