EsuBft1105_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1105_6a-0001
Unique NameEsuBft1105_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_618contigScaffold_618:699456..700165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1105_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length63
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1105_6aEsuBft1105_6aEctocarpus subulatus male Bft15bgeneScaffold_618 699456..700165 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1105_6a-0001-exonagat-exon-20535Ectocarpus subulatus male Bft15bexonScaffold_618 699456..700070 -
EsuBft1105_6a-0001-exonEsuBft1105_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_618 700142..700165 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1105_6a-0001-cdsEsuBft1105_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_618 699456..700070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1105_6a-0001EsuBft1105_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_618 699456..700165 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1105_6a-0001 ID=EsuBft1105_6a-0001|Name=EsuBft1105_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=639bp|location=Sequence derived from alignment at Scaffold_618:699456..700165- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAAGCTGATGGATCAGAAGGAAGAAGTACGAGACCGAGGCTGCGG
CAGGACGCGGAGGAAGCAAGAAAAACGTGCTGAGCTCACCAAGCAACACG
GAAAGTCCCAGTTCCACGTCGCCGAGCCTACCTTGAAGGCTCTCACGGAG
ACTCTCAACACGTTGAGCACGAGCGTGCACGAGGCGCACAAGCAGGGTAC
CCAAATCGAGGACGAGGACATCGCCGAACTCATCGCCGAACTCCGCATCG
AACCCGGAAAGCCGCTCCTGGAGGAAGCGGTGAACGCGATTCAAGGGTGG
GCTACCATCGAGGACGACGATGAAGTGGTTGAGGCTCTCAGAGAGGATAC
GGTGGAAGACATGACGGCACAGCTGGCTGGGACTCGAGTGTCTACCGGCC
GCGAGGAGGAGGACGAGGAGGAGGACAGCGGCGATGACAACACGGGGCTC
GCGCGCCGTGTCCCACCGGCTTATGGTGAACTGTCGTCTCACTTCGGCGT
CCTGGAAGCGGCAGCAGAGGAGAGCGGCAATGGAGACGCGGCGCTCTACC
TAGCGAAAGCGAAGATGGCGATGATTGCAGCGCATTCCAAGAGGCGGGTG
CGCCAGGCAGACATGAGGGAGTTTGTTGCTACGGAGTAA
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protein sequence of EsuBft1105_6a-0001

>EsuBft1105_6 ID=EsuBft1105_6|Name=EsuBft1105_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=212bp
MLKLMDQKEEVRDRGCGRTRRKQEKRAELTKQHGKSQFHVAEPTLKALTE
TLNTLSTSVHEAHKQGTQIEDEDIAELIAELRIEPGKPLLEEAVNAIQGW
ATIEDDDEVVEALREDTVEDMTAQLAGTRVSTGREEEDEEEDSGDDNTGL
ARRVPPAYGELSSHFGVLEAAAEESGNGDAALYLAKAKMAMIAAHSKRRV
RQADMREFVATE
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mRNA from alignment at Scaffold_618:699456..700165-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1105_6a-0001 ID=EsuBft1105_6a-0001|Name=EsuBft1105_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=710bp|location=Sequence derived from alignment at Scaffold_618:699456..700165- (Ectocarpus subulatus male Bft15b)
ATGCTGAAGCTGATGGATCAGAAGGTGACTCATGAGCAGCTAGCAGATCG
CTTCAAGTGCTCGGAACGGTTGGTCCGGGATGTGAAGAAGAACAGGAAGA
AGTACGAGACCGAGGCTGCGGCAGGACGCGGAGGAAGCAAGAAAAACGTG
CTGAGCTCACCAAGCAACACGGAAAGTCCCAGTTCCACGTCGCCGAGCCT
ACCTTGAAGGCTCTCACGGAGACTCTCAACACGTTGAGCACGAGCGTGCA
CGAGGCGCACAAGCAGGGTACCCAAATCGAGGACGAGGACATCGCCGAAC
TCATCGCCGAACTCCGCATCGAACCCGGAAAGCCGCTCCTGGAGGAAGCG
GTGAACGCGATTCAAGGGTGGGCTACCATCGAGGACGACGATGAAGTGGT
TGAGGCTCTCAGAGAGGATACGGTGGAAGACATGACGGCACAGCTGGCTG
GGACTCGAGTGTCTACCGGCCGCGAGGAGGAGGACGAGGAGGAGGACAGC
GGCGATGACAACACGGGGCTCGCGCGCCGTGTCCCACCGGCTTATGGTGA
ACTGTCGTCTCACTTCGGCGTCCTGGAAGCGGCAGCAGAGGAGAGCGGCA
ATGGAGACGCGGCGCTCTACCTAGCGAAAGCGAAGATGGCGATGATTGCA
GCGCATTCCAAGAGGCGGGTGCGCCAGGCAGACATGAGGGAGTTTGTTGC
TACGGAGTAA
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Coding sequence (CDS) from alignment at Scaffold_618:699456..700165-

>EsuBft1105_6a-0001 ID=EsuBft1105_6a-0001|Name=EsuBft1105_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=639bp|location=Sequence derived from alignment at Scaffold_618:699456..700165- (Ectocarpus subulatus male Bft15b)
ATGCTGAAGCTGATGGATCAGAAGGAAGAAGTACGAGACCGAGGCTGCGG
CAGGACGCGGAGGAAGCAAGAAAAACGTGCTGAGCTCACCAAGCAACACG
GAAAGTCCCAGTTCCACGTCGCCGAGCCTACCTTGAAGGCTCTCACGGAG
ACTCTCAACACGTTGAGCACGAGCGTGCACGAGGCGCACAAGCAGGGTAC
CCAAATCGAGGACGAGGACATCGCCGAACTCATCGCCGAACTCCGCATCG
AACCCGGAAAGCCGCTCCTGGAGGAAGCGGTGAACGCGATTCAAGGGTGG
GCTACCATCGAGGACGACGATGAAGTGGTTGAGGCTCTCAGAGAGGATAC
GGTGGAAGACATGACGGCACAGCTGGCTGGGACTCGAGTGTCTACCGGCC
GCGAGGAGGAGGACGAGGAGGAGGACAGCGGCGATGACAACACGGGGCTC
GCGCGCCGTGTCCCACCGGCTTATGGTGAACTGTCGTCTCACTTCGGCGT
CCTGGAAGCGGCAGCAGAGGAGAGCGGCAATGGAGACGCGGCGCTCTACC
TAGCGAAAGCGAAGATGGCGATGATTGCAGCGCATTCCAAGAGGCGGGTG
CGCCAGGCAGACATGAGGGAGTTTGTTGCTACGGAGTAA
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