EsuBft1104_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1104_4a-0001
Unique Name	EsuBft1104_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_440	contig	Scaffold_440:208509..210991 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1104_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	82
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1104_4a	EsuBft1104_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_440 208509..210991 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1104_4a-0001-exon	agat-exon-19889	Ectocarpus subulatus male Bft15b	exon	Scaffold_440 208509..209115 -
EsuBft1104_4a-0001-exon	EsuBft1104_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_440 210648..210809 -
EsuBft1104_4a-0001-exon	agat-exon-19890	Ectocarpus subulatus male Bft15b	exon	Scaffold_440 210933..210991 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1104_4a-0001-cds	EsuBft1104_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_440 208509..209115 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1104_4a-0001	EsuBft1104_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_440 208509..210991 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_440:208509..210991-
coding sequence from alignment at Scaffold_440:208509..210991-

spliced messenger RNA

>EsuBft1104_4a-0001 ID=EsuBft1104_4a-0001|Name=EsuBft1104_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=828bp|location=Sequence derived from alignment at Scaffold_440:208509..210991- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCAACCGCTAGAGACTCTGTATCAACCAGCGCAACGTATCGTGAC
ATTCTTGACCCGGAACAGCAACAGCAGCGACGGCGCCATTTGCCACAGGA
GCAACGGGAGGCTCAGCAAGGGCAACAGCAGTTGGGGCAGGAGGAAGCAG
GAGCCGATCGACAAGGCGTGCAACCGGGTGCACAATATATTGGGACTCCC
GTGCCTACGCGATCAGGTGCGGAAGGGTTGCAACACCAACAGCAGACGCC
ACAAGAAGCCGGACCAGCACCAGCACCATCACCAGCGGCAAGGTCTAGCA
TCTCTCGGTGATTCTCGTGCCGTGAGGAATGCGTCGGAGACACCGCCCCC
GCGCCCAGGCCGTGACGCCGGCGCTACTTCGGGAACGCCCACCGAGCGCC
GAAGGGGCACGACCTCGGCGCCAACCAAGACGGTCAAGCGGGCCCTTCGC
ATGGCGGGCACGGAGGCCGAAGCGCGCCGCATCACCCTATCGGCAGAGCT
CCGCACCGACAGAGACGTTCCGGGGTCCTCCACAGGGTTGCCGCAGCAAC
ACATGCGCGAGAGGGTGGAGCACACGCTCGACTTCTTGTGCTTCCCTGAA
GCGAGCGGCCTCGGACGCAAGAGGCGGATGGGCTCCGGTAAGAAGGTCAG
CAAGACTATCTTCTGGGCGCACGTTGGGGCCATCGCCCGGCAAAGGAGAC
TGGCCAATGCGGACGCGGTTCCTGGAAGTGCGGAGAAGCGGCAGGGGTGC
AACACCGGTGGTGCCGTACCCGCTCCTCGCGTCTCCTCGCAACGCGGGCA
GGAACAGCGGGAGGCGCTAGGGCNNNNN

protein sequence of EsuBft1104_4a-0001

>EsuBft1104_4 ID=EsuBft1104_4|Name=EsuBft1104_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=276bp
MIQPLETLYQPAQRIVTFLTRNSNSSDGAICHRSNGRLSKGNSSWGRRKQ
EPIDKACNRVHNILGLPCLRDQVRKGCNTNSRRHKKPDQHQHHHQRQGLA
SLGDSRAVRNASETPPPRPGRDAGATSGTPTERRRGTTSAPTKTVKRALR
MAGTEAEARRITLSAELRTDRDVPGSSTGLPQQHMRERVEHTLDFLCFPE
ASGLGRKRRMGSGKKVSKTIFWAHVGAIARQRRLANADAVPGSAEKRQGC
NTGGAVPAPRVSSQRGQEQREALGXX

mRNA from alignment at Scaffold_440:208509..210991-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1104_4a-0001 ID=EsuBft1104_4a-0001|Name=EsuBft1104_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2483bp|location=Sequence derived from alignment at Scaffold_440:208509..210991- (Ectocarpus subulatus male Bft15b)
ATGATCCAACCGCTAGAGACTCTGTATCAACCAGCGCAACGTATCGTGAC
ATTCTTGACGTAAGTATGCAGGCTGACCAGGCGCGGCAACCGCAAAGGCC
GGAGCGTCAAGTGCCGTCCCTCGGGCGGGCGCACCTTGCCGGGCATGGGA
CTTTGAGGGCTCGGGACCGGCAGCGGGTGCAGCCGGAACAGCAACAGCAG
CGACGGCGCCATTTGCCACAGGAGCAACGGGAGGCTCAGCAAGGGCAACA
GCAGTTGGGGCAGGAGGAAGCAGGAGCCGATCGACAAGGCGTGCAACCGG
GTGCACAATATATTGGGACTCCCGTGCCTACGCGATCAGGTGCGGTTGGC
GGAATACCTGGCGAAGTCGACCTGATCCAACCGCTCCCGCGACTTCGCCA
GGTATTCCGCCAACCGCACCTGATCGCGTAGGCACGGGAGTCCCAATATA
TTGTGCACCCGGTTGCACGCCTTGTCGATCGGCTCCTGCTTCCTCCTGCC
CCAACTGCTGTTGCCCTTGCTGAGCCTCCCGTTGCTCCTGTGGCAAATGG
CGCCGTCGCTGCTGTTGCTGTTCCGGCTGCACCCGCTGCCGGTCCCGAGC
CCTCAAAGTCCCATGCCCGGCAAGGTGCGCCCGCCCGAGGGACGGCACTT
GACGCTCCGGCCTTTGCGGTTGCCGCGCCTGGTCAGCCTGCATACTTACG
TCAAGAATGTCACGATACGTTGCGCTGGTTGATACAGAGTCTCTAGCGGT
TGGATCATAGGAGCGGTTGGAGCGGAACCGCATTTGGATCGCCCAGATGC
TGCGGTAGGATCGGGAGAAGAAGGCGAAGCAGGAGCGGGAAAAAATGTTG
CAGCAGGCGAGGGAGCGACAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCCAATG
TATACTTCCCGCTCCTGCTCCTGCTCTTGCTGCCGCAGCTTCAGCTGCTC
CAGCTCCTGCTCCCGCTGAAGCACGCATCGGTAGCCTGGCAGCGCCGTTA
TCTTCCTCTTCTTCTGCCTCTGCCACCCCTGCTCCTGCTGATTCCTCGTC
AGCTTTTTCTGCTCCCGCTGCAGCTCTTGCTGCTGCTGCCGCTGCTGTTG
CTCCTCCCGCTTCTGTTGTAGCGTCTGTTGTCGGTGTTGCAAACCTTCCT
GCGACTTCGCGCGCGCGAAGTCGCAGGAAGGGTTGCAACACCAACAGCAG
ACGCCACAAGAAGCCGGACCAGCACCAGCACCATCACCAGCGGCAAGGTC
TAGCATCTCTCGGTGATTCTCGTGCCGTGAGGAATGCGTCGGAGACACCG
CCCCCGCGCCCAGGCCGTGACGCCGGCGCTACTTCGGGAACGCCCACCGA
GCGCCGAAGGGGCACGACCTCGGCGCCAACCAAGACGGTCAAGCGGGCCC
TTCGCATGGCGGGCACGGAGGCCGAAGCGCGCCGCATCACCCTATCGGCA
GAGCTCCGCACCGACAGAGACGTTCCGGGGTCCTCCACAGGGTTGCCGCA
GCAACACATGCGCGAGAGGGTGGAGCACACGCTCGACTTCTTGTGCTTCC
CTGAAGCGAGCGGCCTCGGACGCAAGAGGCGGATGGGCTCCGGTAAGAAG
GTCAGCAAGACTATCTTCTGGGCGCACGTTGGGGCCATCGCCCGGCAAAG
GAGACTGGCCAATGCGGACGCGGTTCCTGGAAGTGCGGAGAAGCGGCAGG
GGTGCAACACCGGTGGTGCCGTACCCGCTCCTCGCGTCTCCTCGCAACGC
GGGCAGGAACAGCGGGAGGCGCTAGGGCNNNNN

Coding sequence (CDS) from alignment at Scaffold_440:208509..210991-

>EsuBft1104_4a-0001 ID=EsuBft1104_4a-0001|Name=EsuBft1104_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=828bp|location=Sequence derived from alignment at Scaffold_440:208509..210991- (Ectocarpus subulatus male Bft15b)
ATGATCCAACCGCTAGAGACTCTGTATCAACCAGCGCAACGTATCGTGAC
ATTCTTGACCCGGAACAGCAACAGCAGCGACGGCGCCATTTGCCACAGGA
GCAACGGGAGGCTCAGCAAGGGCAACAGCAGTTGGGGCAGGAGGAAGCAG
GAGCCGATCGACAAGGCGTGCAACCGGGTGCACAATATATTGGGACTCCC
GTGCCTACGCGATCAGGTGCGGAAGGGTTGCAACACCAACAGCAGACGCC
ACAAGAAGCCGGACCAGCACCAGCACCATCACCAGCGGCAAGGTCTAGCA
TCTCTCGGTGATTCTCGTGCCGTGAGGAATGCGTCGGAGACACCGCCCCC
GCGCCCAGGCCGTGACGCCGGCGCTACTTCGGGAACGCCCACCGAGCGCC
GAAGGGGCACGACCTCGGCGCCAACCAAGACGGTCAAGCGGGCCCTTCGC
ATGGCGGGCACGGAGGCCGAAGCGCGCCGCATCACCCTATCGGCAGAGCT
CCGCACCGACAGAGACGTTCCGGGGTCCTCCACAGGGTTGCCGCAGCAAC
ACATGCGCGAGAGGGTGGAGCACACGCTCGACTTCTTGTGCTTCCCTGAA
GCGAGCGGCCTCGGACGCAAGAGGCGGATGGGCTCCGGTAAGAAGGTCAG
CAAGACTATCTTCTGGGCGCACGTTGGGGCCATCGCCCGGCAAAGGAGAC
TGGCCAATGCGGACGCGGTTCCTGGAAGTGCGGAGAAGCGGCAGGGGTGC
AACACCGGTGGTGCCGTACCCGCTCCTCGCGTCTCCTCGCAACGCGGGCA
GGAACAGCGGGAGGCGCTAGGGCNNNNN