EsuBft1103_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1103_7a-0001
Unique NameEsuBft1103_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_561contigScaffold_561:344098..345076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LIV3
ProteomeIdEsuBft1103_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length63
Hectar predicted targeting categoryother localisation
Evalue4.71e-59
EggNOG OGsCOG2217@1|root,KOG0207@2759|Eukaryota
Ec32 ortholog descriptionHAD-like domain
Ec32 orthologEc-20_001690.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00002
KEGG koko:K17686
KEGG TC3.A.3.5
KEGG ReactionR00086
KEGG Pathwayko01524,ko04016,map01524,map04016
EC3.6.3.54
Descriptioncation-transporting ATPase activity
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1103_7aEsuBft1103_7aEctocarpus subulatus male Bft15bgeneScaffold_561 344098..345076 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1103_7a-0001EsuBft1103_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_561 344128..344889 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1103_7a-0001-exonagat-exon-103182Ectocarpus subulatus male Bft15bexonScaffold_561 344098..344397 -
EsuBft1103_7a-0001-exonagat-exon-103181Ectocarpus subulatus male Bft15bexonScaffold_561 344597..344663 -
EsuBft1103_7a-0001-exonEsuBft1103_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_561 344810..345076 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1103_7a-0001-exonagat-three_prime_utr-995Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_561 344098..344127 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1103_7a-0001-cdsEsuBft1103_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_561 344128..344397 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1103_7a-0001-exonagat-five_prime_utr-629Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_561 344890..345076 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1103_7a-0001 ID=EsuBft1103_7a-0001|Name=EsuBft1103_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=634bp|location=Sequence derived from alignment at Scaffold_561:344098..345076- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTGCTGGGGCGAGTACCACGTAGCACACCGACAACGCTTAAGGTGACCG
ATGAAAATTGCAGTACGTGAGTTTCCTCAGTGTAGAACAGCCTCATCGTG
GCGACAACGCCGCTGAACAGGAGATGTTGGAAATAGGGGTCATATCCACG
GGGATGCAAATGTTTAACGTATTTTGACGTCAACAAGATGGAGCAGTATT
GTCACCGCAACTCGACGCAGGTCAAGGCTAGAAGAAGGCTGTTTGCATTA
CGGAACGAACATTGGTCGGAGGGCGCCAATAAGGAGCTGGGGGCCATCGT
TGGCTCCGCGGATGGCCTACGCCGCCGCACAGGGGCTGGCGTCAAAGGCG
GGGGCGGACGAGCAGTCGCCGCTTCTCCCCTCTCCGGACTCCGTGGCCCG
TCCGAAAGCTGCTGCCACGGCGCCAACGCCGGCAGCACGAAAACTAGGAC
GATGTTGCAGCAGCGGCCTTCACCGGCACAATTGCAAGCGCTAGCTCCGC
CGAAATGCCCTTGGATCGCCGCTGACCCGGAAACCGGCGGGGTGAGGCCG
GGGTGCGCTTGCTCGTGCAGCTTCTGCCGTTGCGTCCGAGCCGAGGAGCC
TTGATACTCCCCCTTGTCCGCGCATCGGCGTGAC
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protein sequence of EsuBft1103_7a-0001

>EsuBft1103_7 ID=EsuBft1103_7|Name=EsuBft1103_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=138bp
MEQYCHRNSTQVKARRRLFALRNEHWSEGANKELGAIVGSADGLRRRTGA
GVKGGGGRAVAASPLSGLRGPSESCCHGANAGSTKTRTMLQQRPSPAQLQ
ALAPPKCPWIAADPETGGVRPGCACSCSFCRCVRAEEP
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mRNA from alignment at Scaffold_561:344098..345076-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1103_7a-0001 ID=EsuBft1103_7a-0001|Name=EsuBft1103_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=979bp|location=Sequence derived from alignment at Scaffold_561:344098..345076- (Ectocarpus subulatus male Bft15b)
GCTGCTGGGGCGAGTACCACGTAGCACACCGACAACGCTTAAGGTGACCG
ATGAAAATTGCAGTACGTGAGTTTCCTCAGTGTAGAACAGCCTCATCGTG
GCGACAACGCCGCTGAACAGGAGATGTTGGAAATAGGGGTCATATCCACG
GGGATGCAAATGTTTAACGTATTTTGACGTCAACAAGATGGAGCAGTATT
GTCACCGCAACTCGACGCAGGTCAAGGCTAGAAGAAGGCTGTTTGCATTA
CGGAACGAACATTGGTCGTCTAACACCCAGCCCCCTGCCGCACCCGCTGC
CACTCCCGCCGCCCTGTGCTCCCATCCGACCTCCGACGGCCCAACCGTTG
ATTCCAGTCGGAAACGGCTACCGTGTGGACGTTGGATATTGGTTGCACAT
GCTTTTGCTGCAGGGAGGGCGCCAATAAGGAGCTGGGGGCCATCGTTGGC
TCCGCGGATGGCCTACGCCGCCGCACAGGGGTAATCCATGGCTGTTGTTA
TGGTCGTCACTGCATCACACGAGCTTGTCTAGATGAACCTTTTGCCCTCG
AATGCCTATTTTGAGGACTTTCCAATGTAGGAGTTGTGGATGAGACGCGG
CACCAATTCGTGACGCTCAATGCACAGTTTCCTTTTTGAGCCCCCCCTCT
TGTTTTCTTCCGTTTTCTTCCTCCGTCAGGCTGGCGTCAAAGGCGGGGGC
GGACGAGCAGTCGCCGCTTCTCCCCTCTCCGGACTCCGTGGCCCGTCCGA
AAGCTGCTGCCACGGCGCCAACGCCGGCAGCACGAAAACTAGGACGATGT
TGCAGCAGCGGCCTTCACCGGCACAATTGCAAGCGCTAGCTCCGCCGAAA
TGCCCTTGGATCGCCGCTGACCCGGAAACCGGCGGGGTGAGGCCGGGGTG
CGCTTGCTCGTGCAGCTTCTGCCGTTGCGTCCGAGCCGAGGAGCCTTGAT
ACTCCCCCTTGTCCGCGCATCGGCGTGAC
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Coding sequence (CDS) from alignment at Scaffold_561:344098..345076-

>EsuBft1103_7a-0001 ID=EsuBft1103_7a-0001|Name=EsuBft1103_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=417bp|location=Sequence derived from alignment at Scaffold_561:344098..345076- (Ectocarpus subulatus male Bft15b)
ATGGAGCAGTATTGTCACCGCAACTCGACGCAGGTCAAGGCTAGAAGAAG
GCTGTTTGCATTACGGAACGAACATTGGTCGGAGGGCGCCAATAAGGAGC
TGGGGGCCATCGTTGGCTCCGCGGATGGCCTACGCCGCCGCACAGGGGCT
GGCGTCAAAGGCGGGGGCGGACGAGCAGTCGCCGCTTCTCCCCTCTCCGG
ACTCCGTGGCCCGTCCGAAAGCTGCTGCCACGGCGCCAACGCCGGCAGCA
CGAAAACTAGGACGATGTTGCAGCAGCGGCCTTCACCGGCACAATTGCAA
GCGCTAGCTCCGCCGAAATGCCCTTGGATCGCCGCTGACCCGGAAACCGG
CGGGGTGAGGCCGGGGTGCGCTTGCTCGTGCAGCTTCTGCCGTTGCGTCC
GAGCCGAGGAGCCTTGA
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