EsuBft1102_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1102_8a-0001
Unique Name	EsuBft1102_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_448	contig	Scaffold_448:39093..40685 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1102_8
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	159
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1102_8a	EsuBft1102_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_448 39093..40685 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1102_8a-0001-exon	EsuBft1102_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_448 39093..40685 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1102_8a-0001-cds	EsuBft1102_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_448 39093..39365 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1102_8a-0001-exon	agat-three_prime_utr-989	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_448 39366..40685 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1102_8a-0001	EsuBft1102_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_448 39093..39365 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_448:39093..40685+
coding sequence from alignment at Scaffold_448:39093..40685+

spliced messenger RNA

>EsuBft1102_8a-0001 ID=EsuBft1102_8a-0001|Name=EsuBft1102_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1593bp|location=Sequence derived from alignment at Scaffold_448:39093..40685+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGGGTCTGCATCAATCACCGAGCCGGTCGGCGACGAAGGGATGGC
CGCCGGCGATCCGAGAGGAGCTCCGTCGATGCCGGGACGGTTCTTGAGCA
GGGCGAGTGCATCTGGCGGAGCCCCCTTCTTGTTCTTCTTTTTCTTGGAG
GAGGATGGTGATCTTGACGCCGGGCTCCGTAAGAGGGATGGTGACGCGCT
GCTGCCGGCGGCCGGCACCCCGCCCGGCGGTGCGCGCTCGACGATGGCCG
TCAGGCTTGCCATGAGCGCCTGACCAAAATACGACCGGGAAGGCGTGCAC
CTATTTTGGTGCTATCGTTGTTGTTGTTGCGCAGTACAACGCTGAAGCCA
GAGAGATCGTTCTATGGGCGGATAAATATGTCCAAGTGTGAAGAAAAGTG
GACGATGGGGCACGAAATGTTGCGTATTTGAGTTTCCTTCGTACGGATCG
AAGAGCATGAGAACACCTGATGTTCCCCGTGAAATATTCTACCCGAATGT
GCGTGCTGGATACTCGTGCATGGTCACCCCCCACACCTGAAGCGTCGATG
GCGGTTTAGGCTCTTCCCACGTTGCGTCCTGGCCGGCCGGCACGGTGACT
CTCTCGAAGGCCTCCCGCACCGTCAATGTGGCGAATTTTTTCACGGTGTC
TGCCGCCATCGCCCCGACAGCTGCCGCCGCCTTCGCTCTCAGCTTTTTCC
CTGCCATATCTCTGTATTTTCTTCGCCGGGGAAATGGTCCCGTGCGCCGA
ATGACCTGTTTTGGTTTGCCAAGAGAGATTATGAGAGCTCAAGCGGAGAA
TCATTCCAGATGCCTCTCTCTCTCTCTCTCTCTCTCCCCAATCTCTCTCT
GCACACGTAGTAGGTATCACGGCAGCCACGACTAAACAAATAATTCCCCA
CAGAGGCGGGAACAAGGAGCCCGCGGCCCCGGCAAGGGGGGGGCGAATGT
ACATGGTGCTGCTTTTCCCCTCTGTCTCACCCGGAGGTTGAACTGAGTGC
TGTCGTCGTGGTCCAGCTCTAGCCTCCTGTCCTGCGCGAGCTCCTCGAGA
ACGTTCGGGGACACATGCGCGCTGAGGATTTGCTCGACGGTAGCCGTGCG
TCCCAAGAAGATCGTCACGCTCTTCCGCAGGCAGTGAGTCCAGAAACCGA
CACCGAGCACCTTGTTGCGAGAGAGAGGTTGTTGGTGTTACGACACGGCT
ATGTGCGGCAACAAGCAATAACTGAAGTAGCGATAGATATCCGAGCTTTT
CTGTTCAAGGACCGAGAATTGAACGTGATACCAAACAACCATGATACTCG
GAACGTAGGTCGTTATCCGGAGGAAGCGTTCTCCTCGTACTGTATTCTTG
TTGCTTGCGCGCTGCTTGAACGACTCGACGTGTGTTGAGACACTCAGTTG
GTTGTTATGGTATTTGGAGGTAGACATGTGATCGTCGTTGGCCATGGTTA
TGTGGCACCGTCGGATGCTAAGACGTGACGTCATGCTAGATCAGGGCTTT
ATGCCGAGACATGTGCCCTTCTGTTCAGTGTGCGTGCAGACGATTCATGA
TGGTGTGTGCGTGGGATATTGTGAGTTGGCTTGGAAAGCGTTA

protein sequence of EsuBft1102_8a-0001

>EsuBft1102_8 ID=EsuBft1102_8|Name=EsuBft1102_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=90bp
MAGSASITEPVGDEGMAAGDPRGAPSMPGRFLSRASASGGAPFLFFFFLE
EDGDLDAGLRKRDGDALLPAAGTPPGGARSTMAVRLAMSA

mRNA from alignment at Scaffold_448:39093..40685+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1102_8a-0001 ID=EsuBft1102_8a-0001|Name=EsuBft1102_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1593bp|location=Sequence derived from alignment at Scaffold_448:39093..40685+ (Ectocarpus subulatus male Bft15b)
ATGGCCGGGTCTGCATCAATCACCGAGCCGGTCGGCGACGAAGGGATGGC
CGCCGGCGATCCGAGAGGAGCTCCGTCGATGCCGGGACGGTTCTTGAGCA
GGGCGAGTGCATCTGGCGGAGCCCCCTTCTTGTTCTTCTTTTTCTTGGAG
GAGGATGGTGATCTTGACGCCGGGCTCCGTAAGAGGGATGGTGACGCGCT
GCTGCCGGCGGCCGGCACCCCGCCCGGCGGTGCGCGCTCGACGATGGCCG
TCAGGCTTGCCATGAGCGCCTGACCAAAATACGACCGGGAAGGCGTGCAC
CTATTTTGGTGCTATCGTTGTTGTTGTTGCGCAGTACAACGCTGAAGCCA
GAGAGATCGTTCTATGGGCGGATAAATATGTCCAAGTGTGAAGAAAAGTG
GACGATGGGGCACGAAATGTTGCGTATTTGAGTTTCCTTCGTACGGATCG
AAGAGCATGAGAACACCTGATGTTCCCCGTGAAATATTCTACCCGAATGT
GCGTGCTGGATACTCGTGCATGGTCACCCCCCACACCTGAAGCGTCGATG
GCGGTTTAGGCTCTTCCCACGTTGCGTCCTGGCCGGCCGGCACGGTGACT
CTCTCGAAGGCCTCCCGCACCGTCAATGTGGCGAATTTTTTCACGGTGTC
TGCCGCCATCGCCCCGACAGCTGCCGCCGCCTTCGCTCTCAGCTTTTTCC
CTGCCATATCTCTGTATTTTCTTCGCCGGGGAAATGGTCCCGTGCGCCGA
ATGACCTGTTTTGGTTTGCCAAGAGAGATTATGAGAGCTCAAGCGGAGAA
TCATTCCAGATGCCTCTCTCTCTCTCTCTCTCTCTCCCCAATCTCTCTCT
GCACACGTAGTAGGTATCACGGCAGCCACGACTAAACAAATAATTCCCCA
CAGAGGCGGGAACAAGGAGCCCGCGGCCCCGGCAAGGGGGGGGCGAATGT
ACATGGTGCTGCTTTTCCCCTCTGTCTCACCCGGAGGTTGAACTGAGTGC
TGTCGTCGTGGTCCAGCTCTAGCCTCCTGTCCTGCGCGAGCTCCTCGAGA
ACGTTCGGGGACACATGCGCGCTGAGGATTTGCTCGACGGTAGCCGTGCG
TCCCAAGAAGATCGTCACGCTCTTCCGCAGGCAGTGAGTCCAGAAACCGA
CACCGAGCACCTTGTTGCGAGAGAGAGGTTGTTGGTGTTACGACACGGCT
ATGTGCGGCAACAAGCAATAACTGAAGTAGCGATAGATATCCGAGCTTTT
CTGTTCAAGGACCGAGAATTGAACGTGATACCAAACAACCATGATACTCG
GAACGTAGGTCGTTATCCGGAGGAAGCGTTCTCCTCGTACTGTATTCTTG
TTGCTTGCGCGCTGCTTGAACGACTCGACGTGTGTTGAGACACTCAGTTG
GTTGTTATGGTATTTGGAGGTAGACATGTGATCGTCGTTGGCCATGGTTA
TGTGGCACCGTCGGATGCTAAGACGTGACGTCATGCTAGATCAGGGCTTT
ATGCCGAGACATGTGCCCTTCTGTTCAGTGTGCGTGCAGACGATTCATGA
TGGTGTGTGCGTGGGATATTGTGAGTTGGCTTGGAAAGCGTTA

Coding sequence (CDS) from alignment at Scaffold_448:39093..40685+

>EsuBft1102_8a-0001 ID=EsuBft1102_8a-0001|Name=EsuBft1102_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=273bp|location=Sequence derived from alignment at Scaffold_448:39093..40685+ (Ectocarpus subulatus male Bft15b)
ATGGCCGGGTCTGCATCAATCACCGAGCCGGTCGGCGACGAAGGGATGGC
CGCCGGCGATCCGAGAGGAGCTCCGTCGATGCCGGGACGGTTCTTGAGCA
GGGCGAGTGCATCTGGCGGAGCCCCCTTCTTGTTCTTCTTTTTCTTGGAG
GAGGATGGTGATCTTGACGCCGGGCTCCGTAAGAGGGATGGTGACGCGCT
GCTGCCGGCGGCCGGCACCCCGCCCGGCGGTGCGCGCTCGACGATGGCCG
TCAGGCTTGCCATGAGCGCCTGA