EsuBft1102_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1102_7a-0001
Unique Name	EsuBft1102_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_448	contig	Scaffold_448:43502..45662 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FW21
ProteomeId	EsuBft1102_7
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	141
Hectar predicted targeting category	other localisation
Evalue	8.61e-243
EggNOG OGs	2CY8W@1\|root,2S2UA@2759\|Eukaryota
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-01_003050.1
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1102_7a	EsuBft1102_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_448 43502..45662 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1102_7a-0001-exon	agat-exon-51101	Ectocarpus subulatus male Bft15b	exon	Scaffold_448 43502..44605 +
EsuBft1102_7a-0001-exon	EsuBft1102_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_448 45031..45111 +
EsuBft1102_7a-0001-exon	agat-exon-51100	Ectocarpus subulatus male Bft15b	exon	Scaffold_448 45432..45662 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1102_7a-0001-cds	EsuBft1102_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_448 43502..44605 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1102_7a-0001	EsuBft1102_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_448 43502..45662 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_448:43502..45662+
coding sequence from alignment at Scaffold_448:43502..45662+

spliced messenger RNA

>EsuBft1102_7a-0001 ID=EsuBft1102_7a-0001|Name=EsuBft1102_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1416bp|location=Sequence derived from alignment at Scaffold_448:43502..45662+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGCGCCGATGTCGAGTAGGAGTTTTGACGGCGAAGCAGAGGGGGA
CGACCGTGCCCCGCCCCGGGTCAAGCGAAAAGGGGGGCGGCCCAAGGGAG
CGCCCAACAAGAAGCCAAGGAAAGCAGCGGGCGGGAGCATTGCGAGGAAC
ATGACCGCGGCTCAGCTGCAGCAGCTGGTCGAGCTCGCTCAGTCAAAGGG
GCTCCGAAGGTCTCCCGAACGTGAAGGCGATGGTGATGGTGAGGACGGCA
ACAATGCCCCTGAAGATGATGGTAGTAGCGGGAGGAGCACCCTGGAGTTG
CTTGCCGACGAGGCGGGCATCTCCGTTGGTGCAGGTGTCGGACGCGGAGG
CAACAGCAACAACAACCGGCCCACGAACGACGACCCTTGGCATAGCGCTG
GACTGGAGGGAGGAGAGACTGATGGCGACAACGACGACGATATCGGCGAC
GATATCGACGATATCGACGAAAATTTCGGAGATCTTGACGACGACGACGT
GCCCTTCGGTGCGGAGATCAGGACCGCCGAGAAGCGGATTCGCGAGCTCA
GACGGAAGCAGCGGCGGCAGCTCAAGCGCCAGCGGATGGAGCACACACTA
GAAGACGAGGCAGAGCGGGAAGCGGCTGCGCTGGACGCCGCTCTTGCTGC
CGTCTACGGGCCGGAAGGACGGCCGTCCGACCTCCTGAGCGCCGCCAAGC
AGCGCAAGAGCAGCAGAGCGGATATAGCATCGCCGATGGTAGACGGCCGA
GTGCAGGACGAGGGCCAGGAGGAGGCGGACCCGCAGGTGCAGCAGCGGGT
ACCCCCGGCTCCTTACGGCCGACCCGAGGTTGGCAGCAGCGTCGACGACG
ACAACAGCGTCGAGGAGAAGTTCGAATTTAATTATCTTTTCCGGGGGATG
GGGATCGGGGACGCGGGCAAGCAAGAACGGGGGGAAGATCAGCTGCCGGA
CGCTATCGAAGTGATCGACCGCCTGGATGAGCTGCTGGCTCTTGACCCGC
CGAGCGAATCGAACGCCAGGTTGCCGTACCCGGAGGCCGAGCCGGACGAG
GAGACGGTTCGCTTGATGCAGGCGAGGGGGATGATGATGGGTTTGGAGCG
ACAGATGTCCGAGGACGATCAGTTGCTTAACCCCGAACTCCGGCAGGTGT
TGGTGGTCATCGGGAAGCATTTAATCAGAGATCAGGTGACGGTAGAGTAT
GCGTCCCGTATTAGACGGCTTGTGCAAGGGCTCAAGTCCGGGCGGCTGCA
GCCGGACCTGGTGTGCTTTACGGGGGGCACCGTGAGGGACAACAGGGTCG
CGGATGCCTCCGCGGGGTACATCTTCTTCCGCCACCTGTGCGAGCAACAC
GAGGCAAGGGGGGTGACGTTCATCGATCAATTGTGGACTGAAAATACCAC
AGAGAGCTGTGTGTGA

protein sequence of EsuBft1102_7a-0001

>EsuBft1102_7 ID=EsuBft1102_7|Name=EsuBft1102_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=471bp
MSAPMSSRSFDGEAEGDDRAPPRVKRKGGRPKGAPNKKPRKAAGGSIARN
MTAAQLQQLVELAQSKGLRRSPEREGDGDGEDGNNAPEDDGSSGRSTLEL
LADEAGISVGAGVGRGGNSNNNRPTNDDPWHSAGLEGGETDGDNDDDIGD
DIDDIDENFGDLDDDDVPFGAEIRTAEKRIRELRRKQRRQLKRQRMEHTL
EDEAEREAAALDAALAAVYGPEGRPSDLLSAAKQRKSSRADIASPMVDGR
VQDEGQEEADPQVQQRVPPAPYGRPEVGSSVDDDNSVEEKFEFNYLFRGM
GIGDAGKQERGEDQLPDAIEVIDRLDELLALDPPSESNARLPYPEAEPDE
ETVRLMQARGMMMGLERQMSEDDQLLNPELRQVLVVIGKHLIRDQVTVEY
ASRIRRLVQGLKSGRLQPDLVCFTGGTVRDNRVADASAGYIFFRHLCEQH
EARGVTFIDQLWTENTTESCV

mRNA from alignment at Scaffold_448:43502..45662+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1102_7a-0001 ID=EsuBft1102_7a-0001|Name=EsuBft1102_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2161bp|location=Sequence derived from alignment at Scaffold_448:43502..45662+ (Ectocarpus subulatus male Bft15b)
ATGTCAGCGCCGATGTCGAGTAGGAGTTTTGACGGCGAAGCAGAGGGGGA
CGACCGTGCCCCGCCCCGGGTCAAGCGAAAAGGGGGGCGGCCCAAGGGAG
CGCCCAACAAGAAGCCAAGGAAAGCAGCGGGCGGGAGCATTGCGAGGAAC
ATGACCGCGGCTCAGCTGCAGCAGCTGGTCGAGCTCGCTCAGTCAAAGGG
GCTCCGAAGGTCTCCCGAACGTGAAGGCGATGGTGATGGTGAGGACGGCA
ACAATGCCCCTGAAGATGATGGTAGTAGCGGGAGGAGCACCCTGGAGTTG
CTTGCCGACGAGGCGGGCATCTCCGTTGGTGCAGGTGTCGGACGCGGAGG
CAACAGCAACAACAACCGGCCCACGAACGACGACCCTTGGCATAGCGCTG
GACTGGAGGGAGGAGAGACTGATGGCGACAACGACGACGATATCGGCGAC
GATATCGACGATATCGACGAAAATTTCGGAGATCTTGACGACGACGACGT
GCCCTTCGGTGCGGAGATCAGGACCGCCGAGAAGCGGATTCGCGAGCTCA
GACGGAAGCAGCGGCGGCAGCTCAAGCGCCAGCGGATGGAGCACACACTA
GAAGACGAGGCAGAGCGGGAAGCGGCTGCGCTGGACGCCGCTCTTGCTGC
CGTCTACGGGCCGGAAGGACGGCCGTCCGACCTCCTGAGCGCCGCCAAGC
AGCGCAAGAGCAGCAGAGCGGATATAGCATCGCCGATGGTAGACGGCCGA
GTGCAGGACGAGGGCCAGGAGGAGGCGGACCCGCAGGTGCAGCAGCGGGT
ACCCCCGGCTCCTTACGGCCGACCCGAGGTTGGCAGCAGCGTCGACGACG
ACAACAGCGTCGAGGAGAAGTTCGAATTTAATTATCTTTTCCGGGGGATG
GGGATCGGGGACGCGGGCAAGCAAGAACGGGGGGAAGATCAGCTGCCGGA
CGCTATCGAAGTGATCGACCGCCTGGATGAGCTGCTGGCTCTTGACCCGC
CGAGCGAATCGAACGCCAGGTTGCCGTACCCGGAGGCCGAGCCGGACGAG
GAGACGGTTCGCTTGATGCAGGCGAGGGGGATGATGATGGGTTTGGAGCG
ACAGGTGTTCGTTGTTGCGCCGCCGAAGCCGTTTAGGCAGCACAGCGAGA
GCAGCCGGTTGCATTTCTTCATTCGTGTGGGGATGAGCGAAAAGCGGCGT
GGGCCTCAGCAAAGCAATGCCTGGACGCATACAATACAATGTACCATCCC
GCCCCCGTAGCCTACCGTCTGACCAGAGTGATTCCCCCCCCCCCGTAAGC
GCTGCAATCGTGTGAAGAGCACTGCACGTTGTAGATGAAGGGGTGACCTT
CTTGAAAACGGGTCTCATGTCGAGGACGATTCGCTCTTGTCACGGAGACG
TGCAATTGACACTAATATCCCCTCCAAGGAACGGTGTTACGCCCTACTGT
AGCTTATCACTCAACATAGGACTATGCCCCCCCCTCCCCTCCCCCCCCGT
GCTGGTTTCTGCCCGACTGCCTTCAGTAGATGTCCGAGGACGATCAGTTG
CTTAACCCCGAACTCCGGCAGGTGTTGGTGGTCATCGGGAAGCATTTAAT
CAGAGATCAGGTGAGCTGATTAGTGGTTGTTGTTGGTGCGTTCTATTAAA
GCTGTTGTGATGTTGCGGTCTGGACCCCAGTGTACCGCCAACCCCGCTGC
TGCGCCAATTTGTGCATTATGTATAGCATCGCAGCCGCTCCGTGTTGTCC
CCCAACTCTGCTGTGCAAGATCGCAGCCGTACTCAGCGTATTCCCCCAAC
TCTGCCGTGACGAACGAAGCCAATCCAACCCGCGAAACACGCAAGCGTTG
CGCGTCCACCGTCATCAGACAAGGATGCCGGGTGAATGCCACCGCTCAGA
CCCCCTCCTCCCGCCCCCCTCTCTTACTAGGTGACGGTAGAGTATGCGTC
CCGTATTAGACGGCTTGTGCAAGGGCTCAAGTCCGGGCGGCTGCAGCCGG
ACCTGGTGTGCTTTACGGGGGGCACCGTGAGGGACAACAGGGTCGCGGAT
GCCTCCGCGGGGTACATCTTCTTCCGCCACCTGTGCGAGCAACACGAGGC
AAGGGGGGTGACGTTCATCGATCAATTGTGGACTGAAAATACCACAGAGA
GCTGTGTGTGA

Coding sequence (CDS) from alignment at Scaffold_448:43502..45662+

>EsuBft1102_7a-0001 ID=EsuBft1102_7a-0001|Name=EsuBft1102_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1416bp|location=Sequence derived from alignment at Scaffold_448:43502..45662+ (Ectocarpus subulatus male Bft15b)
ATGTCAGCGCCGATGTCGAGTAGGAGTTTTGACGGCGAAGCAGAGGGGGA
CGACCGTGCCCCGCCCCGGGTCAAGCGAAAAGGGGGGCGGCCCAAGGGAG
CGCCCAACAAGAAGCCAAGGAAAGCAGCGGGCGGGAGCATTGCGAGGAAC
ATGACCGCGGCTCAGCTGCAGCAGCTGGTCGAGCTCGCTCAGTCAAAGGG
GCTCCGAAGGTCTCCCGAACGTGAAGGCGATGGTGATGGTGAGGACGGCA
ACAATGCCCCTGAAGATGATGGTAGTAGCGGGAGGAGCACCCTGGAGTTG
CTTGCCGACGAGGCGGGCATCTCCGTTGGTGCAGGTGTCGGACGCGGAGG
CAACAGCAACAACAACCGGCCCACGAACGACGACCCTTGGCATAGCGCTG
GACTGGAGGGAGGAGAGACTGATGGCGACAACGACGACGATATCGGCGAC
GATATCGACGATATCGACGAAAATTTCGGAGATCTTGACGACGACGACGT
GCCCTTCGGTGCGGAGATCAGGACCGCCGAGAAGCGGATTCGCGAGCTCA
GACGGAAGCAGCGGCGGCAGCTCAAGCGCCAGCGGATGGAGCACACACTA
GAAGACGAGGCAGAGCGGGAAGCGGCTGCGCTGGACGCCGCTCTTGCTGC
CGTCTACGGGCCGGAAGGACGGCCGTCCGACCTCCTGAGCGCCGCCAAGC
AGCGCAAGAGCAGCAGAGCGGATATAGCATCGCCGATGGTAGACGGCCGA
GTGCAGGACGAGGGCCAGGAGGAGGCGGACCCGCAGGTGCAGCAGCGGGT
ACCCCCGGCTCCTTACGGCCGACCCGAGGTTGGCAGCAGCGTCGACGACG
ACAACAGCGTCGAGGAGAAGTTCGAATTTAATTATCTTTTCCGGGGGATG
GGGATCGGGGACGCGGGCAAGCAAGAACGGGGGGAAGATCAGCTGCCGGA
CGCTATCGAAGTGATCGACCGCCTGGATGAGCTGCTGGCTCTTGACCCGC
CGAGCGAATCGAACGCCAGGTTGCCGTACCCGGAGGCCGAGCCGGACGAG
GAGACGGTTCGCTTGATGCAGGCGAGGGGGATGATGATGGGTTTGGAGCG
ACAGATGTCCGAGGACGATCAGTTGCTTAACCCCGAACTCCGGCAGGTGT
TGGTGGTCATCGGGAAGCATTTAATCAGAGATCAGGTGACGGTAGAGTAT
GCGTCCCGTATTAGACGGCTTGTGCAAGGGCTCAAGTCCGGGCGGCTGCA
GCCGGACCTGGTGTGCTTTACGGGGGGCACCGTGAGGGACAACAGGGTCG
CGGATGCCTCCGCGGGGTACATCTTCTTCCGCCACCTGTGCGAGCAACAC
GAGGCAAGGGGGGTGACGTTCATCGATCAATTGTGGACTGAAAATACCAC
AGAGAGCTGTGTGTGA