EsuBft1102_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1102_5a-0001
Unique NameEsuBft1102_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_448contigScaffold_448:65939..66529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005092035.1
ProteomeIdEsuBft1102_5
Protein domainsPTHR19446
Protein domainsSSF56672
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteline-1 retrotransposable element orf2 protein os:homo sapiens pe:1 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length591
Evalue1.15e-48
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria
Date last modified2016-06-13
Date creation2016-06-13
DescriptionRibonuclease H protein
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0016779
GO0006278
GO0004519
GO0032197
GO0090305
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1102_5aEsuBft1102_5aEctocarpus subulatus male Bft15bgeneScaffold_448 65939..66529 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1102_5a-0001-exonEsuBft1102_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_448 65939..66529 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1102_5a-0001-cdsEsuBft1102_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_448 65939..66529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1102_5a-0001EsuBft1102_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_448 65939..66529 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1102_5a-0001 ID=EsuBft1102_5a-0001|Name=EsuBft1102_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=591bp|location=Sequence derived from alignment at Scaffold_448:65939..66529- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGGCAAGGCTCCATCGACCGATGGAGCTGTTGCTCGTAGACCTTA
TGCATCGCGGATTCACCACTCTGTTGGTTCGTGGACCAGATCCTGTAACT
CCATCATTAAGGTGTTGTACAAGAAGGGTGACCGGTCGAACTGCAACAAC
TTCAGGGGCATCTCGCTGCTCTCGCATGTAGGCAAAATACTCGCCAAGAC
CATCACCAACCGCCTGAGCGCATTCTGCGAAGCCAACGAAATCCTCCCGG
AGGAACAGTGCGGGTTCCGGCCTGGCCGATCCACGGTATGCATGCTGTTC
GTTGTGCGCCGACTCCAGGAGCTGGGGCGGAGGAGGAGAATCCCGCTCTA
CATGTGCTTCATCGATCTGCAGAAGGCCTACGACTCGGTGGACCGGGAGC
TGCTGTGGAAGGTGCTGGCCCGGGCCGGGATCCCCGCGGAGATGATCGCC
GTCATCCGCAAGTTCCACGTCGGAATGCGGGCCCGGGTCCGCACGGACGA
TGGGGAGCTATCGGACTGGTTCCCGGTCACGCAGGGATTACGACAAGGGT
GCTCAATGTCCCCACTGCTGTTCAACGTCTTCTTCGCNNNN
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protein sequence of EsuBft1102_5a-0001

>EsuBft1102_5 ID=EsuBft1102_5|Name=EsuBft1102_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=197bp
MHGKAPSTDGAVARRPYASRIHHSVGSWTRSCNSIIKVLYKKGDRSNCNN
FRGISLLSHVGKILAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLF
VVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPAEMIA
VIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAX
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mRNA from alignment at Scaffold_448:65939..66529-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1102_5a-0001 ID=EsuBft1102_5a-0001|Name=EsuBft1102_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=591bp|location=Sequence derived from alignment at Scaffold_448:65939..66529- (Ectocarpus subulatus male Bft15b)
ATGCATGGCAAGGCTCCATCGACCGATGGAGCTGTTGCTCGTAGACCTTA
TGCATCGCGGATTCACCACTCTGTTGGTTCGTGGACCAGATCCTGTAACT
CCATCATTAAGGTGTTGTACAAGAAGGGTGACCGGTCGAACTGCAACAAC
TTCAGGGGCATCTCGCTGCTCTCGCATGTAGGCAAAATACTCGCCAAGAC
CATCACCAACCGCCTGAGCGCATTCTGCGAAGCCAACGAAATCCTCCCGG
AGGAACAGTGCGGGTTCCGGCCTGGCCGATCCACGGTATGCATGCTGTTC
GTTGTGCGCCGACTCCAGGAGCTGGGGCGGAGGAGGAGAATCCCGCTCTA
CATGTGCTTCATCGATCTGCAGAAGGCCTACGACTCGGTGGACCGGGAGC
TGCTGTGGAAGGTGCTGGCCCGGGCCGGGATCCCCGCGGAGATGATCGCC
GTCATCCGCAAGTTCCACGTCGGAATGCGGGCCCGGGTCCGCACGGACGA
TGGGGAGCTATCGGACTGGTTCCCGGTCACGCAGGGATTACGACAAGGGT
GCTCAATGTCCCCACTGCTGTTCAACGTCTTCTTCGCNNNN
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Coding sequence (CDS) from alignment at Scaffold_448:65939..66529-

>EsuBft1102_5a-0001 ID=EsuBft1102_5a-0001|Name=EsuBft1102_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=591bp|location=Sequence derived from alignment at Scaffold_448:65939..66529- (Ectocarpus subulatus male Bft15b)
ATGCATGGCAAGGCTCCATCGACCGATGGAGCTGTTGCTCGTAGACCTTA
TGCATCGCGGATTCACCACTCTGTTGGTTCGTGGACCAGATCCTGTAACT
CCATCATTAAGGTGTTGTACAAGAAGGGTGACCGGTCGAACTGCAACAAC
TTCAGGGGCATCTCGCTGCTCTCGCATGTAGGCAAAATACTCGCCAAGAC
CATCACCAACCGCCTGAGCGCATTCTGCGAAGCCAACGAAATCCTCCCGG
AGGAACAGTGCGGGTTCCGGCCTGGCCGATCCACGGTATGCATGCTGTTC
GTTGTGCGCCGACTCCAGGAGCTGGGGCGGAGGAGGAGAATCCCGCTCTA
CATGTGCTTCATCGATCTGCAGAAGGCCTACGACTCGGTGGACCGGGAGC
TGCTGTGGAAGGTGCTGGCCCGGGCCGGGATCCCCGCGGAGATGATCGCC
GTCATCCGCAAGTTCCACGTCGGAATGCGGGCCCGGGTCCGCACGGACGA
TGGGGAGCTATCGGACTGGTTCCCGGTCACGCAGGGATTACGACAAGGGT
GCTCAATGTCCCCACTGCTGTTCAACGTCTTCTTCGCNNNN
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