EsuBft1102_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1102_3a-0001
Unique NameEsuBft1102_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_448contigScaffold_448:67267..69345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft1102_3
Protein domainsSSF56672
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteprobable rna-directed dna polymerase from transposon x-element os:drosophila melanogaster gn:x- [Automatic annotation]
Nb exon1
Max annot lvl2759|Eukaryota
Length2079
Hectar predicted targeting categoryother localisation
Evalue5.59e-173
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0006259
EC3.1
GO0004518
GO0016740
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1102_3aEsuBft1102_3aEctocarpus subulatus male Bft15bgeneScaffold_448 67267..69345 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1102_3a-0001-exonEsuBft1102_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_448 67267..69345 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1102_3a-0001-exonagat-three_prime_utr-987Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_448 67267..67420 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1102_3a-0001-cdsEsuBft1102_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_448 67421..69040 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1102_3a-0001-exonagat-five_prime_utr-620Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_448 69041..69345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1102_3a-0001EsuBft1102_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_448 67421..69040 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1102_3a-0001 ID=EsuBft1102_3a-0001|Name=EsuBft1102_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2079bp|location=Sequence derived from alignment at Scaffold_448:67267..69345- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GAGGAAAGNNNNNNNNNNNNNNNNNNNNNNNNNCCAATCGTGAACGCAAC
GGCAGAGAGAGTAGTGGGAAAGAAGGTGGTACGATTGGGGTATCGGTTAA
GTGGTGGGATGACGAGCTGAAAGGAGAAATAGGGGAACGTAGAGAAGTCT
TCAAGCAGTACCTGAGTGAGGCGTCTGAGGAGAGTTGGGAAAAGTACAGG
GCCAAGAGAAAACAGGTGAAGGGACTAGTGAAAAAGAAGAAAATGTGTAT
TTGAGACAAAGTAGTGCAGAAGGCCAACGGAGGTCTGGAGGGAAACGTCA
AGCAGATGTGGGAAGGGATTAGTGGAATGGTAAAAAAGACCGCGCAAGGT
GGGGATACAGGGGTCGCAACTTTGCGAGGTGTGAACGGTGGATTAGTCAG
CAGTGGGAAGGGAAAAAGGGAAGTTCTAGCAGGACACTACAAGAGACTTG
GAGTGCCCTCGGAGAATGAAGCTTTTGACCAAGTGTGTAAGGGGGAGGTG
GACGCATGGGCCCAAAAAGAAGAAGAGACATCGAAGGCAGACGTTGGGAA
CGTAGAACTAGAAAAGGAGTTCACTGAGGACGAGGTTGAGGCGTGTGTGA
ACAAGCTGAAGTGCCACAAAGCAGCAGGAGCGGATGGGATAGTCAACGAG
TTCATGAAGTTTGGGGGGAAGGGGATGATCCAGCTGATGGTACTGCTATA
CAATTGGGTGTGGAAAAACGAGTATACGCCAAGTAGATGGAGGGAAGGAG
TGGTTGTGAACTTGTTTAAGAATGGAGACAAGACTGACCCAGGAAACTGC
AGGGGGATCACACTGTTGAGCACAGTAGGAAAAGAGTTCTGTAAGCTGCT
GAACGATAGGATAGTGGGAGTATTGGAGAAGGAACATAGCATTAGTGAGG
GCCAGGCAGGTTTCCGCAAGAAGAGGGGGTGCGTAGACCACGTGTTCACG
GTAGGGAGAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTG
CTTCTTCCTGGACGTGAAAAAGGCATACGACACCGTGTGGAGAAATGGGT
TGTGGAAACAACTGTCCAAATACGGGATCAAGGGGAAAATGTGGAGAGTG
CTGAAGAAGATGACAGAGTGCACGAAAAGCGCGGTCATGCTAGACGGAGA
ACTGTCAAAATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTGCACGC
TGTCCCCAACATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTA
GAGGCAGTCCGGAAGGGAGTAAAAGTAGGGGACACGGAAACGTCGGTTTC
AGGAATGCTGTTTGCGGATGATTTTGTCGGTATGTCGGACACCCCTGAGG
GACTGCAACTGCAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGA
TTGTCTGCCAACGTTCAGAAGAGTGCCGTCATGGTATGCAACGAGAACAA
GGAGGAACCAGTAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAG
TAGTGGACCAGTACACATACCTTGGAGTAGAGATCGCAAAAGACTGCTCG
TGGAATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAATCACGAGCAGG
GAAGCTGCATCCAATACTCGCAAACCGGCACCTCGATACACGCATCAAAT
TGACGGTTTTGAAGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAA
GTATGGGAAGGAAATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGAT
GAAAGCAGCGAAAACCATCCTTGGATGCTCCAGGCGCACAAGCAATGCAG
CCGTGAGGGCAGAATTTCGGATCCAATCCCTACGGGCGGGAAGAGACGCG
AGGAAGCTGACATTACAGTATCATATGTGCGGGAGGGGAGAGGAGACGTT
GCCGAGAATTGTATGGGAGGTGTAGTGGGCAAACAAAAAGAGGGGTAGAC
AACCCACGGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGCTCGAC
ATCGACGAAGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGA
GAAGATATCTGTTGCTTGTGCCGAGAGAG
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protein sequence of EsuBft1102_3a-0001

>EsuBft1102_3 ID=EsuBft1102_3|Name=EsuBft1102_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=539bp
MWEGISGMVKKTAQGGDTGVATLRGVNGGLVSSGKGKREVLAGHYKRLGV
PSENEAFDQVCKGEVDAWAQKEEETSKADVGNVELEKEFTEDEVEACVNK
LKCHKAAGADGIVNEFMKFGGKGMIQLMVLLYNWVWKNEYTPSRWREGVV
VNLFKNGDKTDPGNCRGITLLSTVGKEFCKLLNDRIVGVLEKEHSISEGQ
AGFRKKRGCVDHVFTVGRIIQGRKRAGKPTYCFFLDVKKAYDTVWRNGLW
KQLSKYGIKGKMWRVLKKMTECTKSAVMLDGELSKFFDIEQGVPQGCTLS
PTLFQVFINDLLEVVEAVRKGVKVGDTETSVSGMLFADDFVGMSDTPEGL
QLQIDAAKKFTDKWRLSANVQKSAVMVCNENKEEPVEHRWKWGIEEIAVV
DQYTYLGVEIAKDCSWNAHMSKVAEKGKSRAGKLHPILANRHLDTRIKLT
VLKSVIVPPLEYAGEVWEGNKKVVKELEAAQMKAAKTILGCSRRTSNAAV
RAEFRIQSLRAGRDARKLTLQYHMCGRGEETLPRIVWEV
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mRNA from alignment at Scaffold_448:67267..69345-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1102_3a-0001 ID=EsuBft1102_3a-0001|Name=EsuBft1102_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2079bp|location=Sequence derived from alignment at Scaffold_448:67267..69345- (Ectocarpus subulatus male Bft15b)
GAGGAAAGNNNNNNNNNNNNNNNNNNNNNNNNNCCAATCGTGAACGCAAC
GGCAGAGAGAGTAGTGGGAAAGAAGGTGGTACGATTGGGGTATCGGTTAA
GTGGTGGGATGACGAGCTGAAAGGAGAAATAGGGGAACGTAGAGAAGTCT
TCAAGCAGTACCTGAGTGAGGCGTCTGAGGAGAGTTGGGAAAAGTACAGG
GCCAAGAGAAAACAGGTGAAGGGACTAGTGAAAAAGAAGAAAATGTGTAT
TTGAGACAAAGTAGTGCAGAAGGCCAACGGAGGTCTGGAGGGAAACGTCA
AGCAGATGTGGGAAGGGATTAGTGGAATGGTAAAAAAGACCGCGCAAGGT
GGGGATACAGGGGTCGCAACTTTGCGAGGTGTGAACGGTGGATTAGTCAG
CAGTGGGAAGGGAAAAAGGGAAGTTCTAGCAGGACACTACAAGAGACTTG
GAGTGCCCTCGGAGAATGAAGCTTTTGACCAAGTGTGTAAGGGGGAGGTG
GACGCATGGGCCCAAAAAGAAGAAGAGACATCGAAGGCAGACGTTGGGAA
CGTAGAACTAGAAAAGGAGTTCACTGAGGACGAGGTTGAGGCGTGTGTGA
ACAAGCTGAAGTGCCACAAAGCAGCAGGAGCGGATGGGATAGTCAACGAG
TTCATGAAGTTTGGGGGGAAGGGGATGATCCAGCTGATGGTACTGCTATA
CAATTGGGTGTGGAAAAACGAGTATACGCCAAGTAGATGGAGGGAAGGAG
TGGTTGTGAACTTGTTTAAGAATGGAGACAAGACTGACCCAGGAAACTGC
AGGGGGATCACACTGTTGAGCACAGTAGGAAAAGAGTTCTGTAAGCTGCT
GAACGATAGGATAGTGGGAGTATTGGAGAAGGAACATAGCATTAGTGAGG
GCCAGGCAGGTTTCCGCAAGAAGAGGGGGTGCGTAGACCACGTGTTCACG
GTAGGGAGAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTG
CTTCTTCCTGGACGTGAAAAAGGCATACGACACCGTGTGGAGAAATGGGT
TGTGGAAACAACTGTCCAAATACGGGATCAAGGGGAAAATGTGGAGAGTG
CTGAAGAAGATGACAGAGTGCACGAAAAGCGCGGTCATGCTAGACGGAGA
ACTGTCAAAATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTGCACGC
TGTCCCCAACATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTA
GAGGCAGTCCGGAAGGGAGTAAAAGTAGGGGACACGGAAACGTCGGTTTC
AGGAATGCTGTTTGCGGATGATTTTGTCGGTATGTCGGACACCCCTGAGG
GACTGCAACTGCAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGA
TTGTCTGCCAACGTTCAGAAGAGTGCCGTCATGGTATGCAACGAGAACAA
GGAGGAACCAGTAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAG
TAGTGGACCAGTACACATACCTTGGAGTAGAGATCGCAAAAGACTGCTCG
TGGAATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAATCACGAGCAGG
GAAGCTGCATCCAATACTCGCAAACCGGCACCTCGATACACGCATCAAAT
TGACGGTTTTGAAGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAA
GTATGGGAAGGAAATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGAT
GAAAGCAGCGAAAACCATCCTTGGATGCTCCAGGCGCACAAGCAATGCAG
CCGTGAGGGCAGAATTTCGGATCCAATCCCTACGGGCGGGAAGAGACGCG
AGGAAGCTGACATTACAGTATCATATGTGCGGGAGGGGAGAGGAGACGTT
GCCGAGAATTGTATGGGAGGTGTAGTGGGCAAACAAAAAGAGGGGTAGAC
AACCCACGGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGCTCGAC
ATCGACGAAGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGA
GAAGATATCTGTTGCTTGTGCCGAGAGAG
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Coding sequence (CDS) from alignment at Scaffold_448:67267..69345-

>EsuBft1102_3a-0001 ID=EsuBft1102_3a-0001|Name=EsuBft1102_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1620bp|location=Sequence derived from alignment at Scaffold_448:67267..69345- (Ectocarpus subulatus male Bft15b)
ATGTGGGAAGGGATTAGTGGAATGGTAAAAAAGACCGCGCAAGGTGGGGA
TACAGGGGTCGCAACTTTGCGAGGTGTGAACGGTGGATTAGTCAGCAGTG
GGAAGGGAAAAAGGGAAGTTCTAGCAGGACACTACAAGAGACTTGGAGTG
CCCTCGGAGAATGAAGCTTTTGACCAAGTGTGTAAGGGGGAGGTGGACGC
ATGGGCCCAAAAAGAAGAAGAGACATCGAAGGCAGACGTTGGGAACGTAG
AACTAGAAAAGGAGTTCACTGAGGACGAGGTTGAGGCGTGTGTGAACAAG
CTGAAGTGCCACAAAGCAGCAGGAGCGGATGGGATAGTCAACGAGTTCAT
GAAGTTTGGGGGGAAGGGGATGATCCAGCTGATGGTACTGCTATACAATT
GGGTGTGGAAAAACGAGTATACGCCAAGTAGATGGAGGGAAGGAGTGGTT
GTGAACTTGTTTAAGAATGGAGACAAGACTGACCCAGGAAACTGCAGGGG
GATCACACTGTTGAGCACAGTAGGAAAAGAGTTCTGTAAGCTGCTGAACG
ATAGGATAGTGGGAGTATTGGAGAAGGAACATAGCATTAGTGAGGGCCAG
GCAGGTTTCCGCAAGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTAGG
GAGAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTCT
TCCTGGACGTGAAAAAGGCATACGACACCGTGTGGAGAAATGGGTTGTGG
AAACAACTGTCCAAATACGGGATCAAGGGGAAAATGTGGAGAGTGCTGAA
GAAGATGACAGAGTGCACGAAAAGCGCGGTCATGCTAGACGGAGAACTGT
CAAAATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCC
CCAACATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAGGC
AGTCCGGAAGGGAGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAGGAA
TGCTGTTTGCGGATGATTTTGTCGGTATGTCGGACACCCCTGAGGGACTG
CAACTGCAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTC
TGCCAACGTTCAGAAGAGTGCCGTCATGGTATGCAACGAGAACAAGGAGG
AACCAGTAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTG
GACCAGTACACATACCTTGGAGTAGAGATCGCAAAAGACTGCTCGTGGAA
TGCACACATGTCCAAGGTAGCGGAAAAGGGCAAATCACGAGCAGGGAAGC
TGCATCCAATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGACG
GTTTTGAAGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATG
GGAAGGAAATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAAG
CAGCGAAAACCATCCTTGGATGCTCCAGGCGCACAAGCAATGCAGCCGTG
AGGGCAGAATTTCGGATCCAATCCCTACGGGCGGGAAGAGACGCGAGGAA
GCTGACATTACAGTATCATATGTGCGGGAGGGGAGAGGAGACGTTGCCGA
GAATTGTATGGGAGGTGTAG
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