EsuBft1102_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1102_2a-0001
Unique Name	EsuBft1102_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_448	contig	Scaffold_448:74817..77755 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1102_2
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	293
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1102_2a	EsuBft1102_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_448 74817..77755 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1102_2a-0001-exon	EsuBft1102_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_448 74817..77755 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1102_2a-0001-exon	agat-three_prime_utr-986	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_448 74817..77593 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1102_2a-0001-cds	EsuBft1102_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_448 77594..77755 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1102_2a-0001	EsuBft1102_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_448 77594..77755 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_448:74817..77755-
coding sequence from alignment at Scaffold_448:74817..77755-

spliced messenger RNA

>EsuBft1102_2a-0001 ID=EsuBft1102_2a-0001|Name=EsuBft1102_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2939bp|location=Sequence derived from alignment at Scaffold_448:74817..77755- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGTACTAACTGCTTCTGCTTCCCTCGCGCGCTGGCGCTTCGCGGA
CGCTTCCGCCTCCTGCCTGTGCCATTTCCTCATGAACCATGCCGCCCCGT
CCTCGACCTTGTTGTACCACACCTCCGAGTTCTTGGCGCTCTCTTTCCAT
TTACCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTGAAGTCCTATCA
CATCACAGCCGGTCGCGGAACAAATCTGCATGACCGTTATCACGTTGTGA
CCGATGCGGTTCCTACCGCTGTAGGAGAGCGTGCGTACGTTGAACGTGCC
AAACGATAGGTCGCCCTCTCGTGCCTTCTTCTTCGCAGCCGCCTTGACGG
TCGCTGCGGTCTCGTGTCTCTCTCGGTCCACCTCGCGTTGCGGGTGTGCT
TTCTTCCGTATTTTCCGAGCCGCGACTTTCCTCGCATCAATCCATCTCTG
CAGAGCTCGGTTCTTGCCTGTGGTGTTTTGACGAGGAGGGTGCAGCACTC
CCTCCCCGCGGTGCCCGCGGTTGTCTCCCTTCTCCCGCGAGCGGTGCTTA
CTGACGTGGTGTTTACGAATCTCTCTACTCCTCCAGCTTCGTGGGCCACG
CTTTCCGCGACGGTGGTTGCCAGGTGCAGTTTGCCGCTTTGCATTACTGC
CGCGGGAACAGTGTCCATACACACCTCTCGCCACTACCACCGTCTGTGCA
TCCTCACCGCCACGCTGAGCCAGCGCGGCGGTGAGTTGCACCTTGGGACA
CCACCCGCCTACTATCTGTTGTGGCCTGGTTCGCCCGCGAGGGACTCACT
AGGTCGATTTCGGCCCCGGCCGGGGAGCAGGCCGAGGGG

protein sequence of EsuBft1102_2a-0001

>EsuBft1102_2 ID=EsuBft1102_2|Name=EsuBft1102_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=54bp
MVVLTASASLARWRFADASASCLCHFLMNHAAPSSTLLYHTSEFLALSFH
LPPX

mRNA from alignment at Scaffold_448:74817..77755-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1102_2a-0001 ID=EsuBft1102_2a-0001|Name=EsuBft1102_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2939bp|location=Sequence derived from alignment at Scaffold_448:74817..77755- (Ectocarpus subulatus male Bft15b)
ATGGTCGTACTAACTGCTTCTGCTTCCCTCGCGCGCTGGCGCTTCGCGGA
CGCTTCCGCCTCCTGCCTGTGCCATTTCCTCATGAACCATGCCGCCCCGT
CCTCGACCTTGTTGTACCACACCTCCGAGTTCTTGGCGCTCTCTTTCCAT
TTACCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTGAAGTCCTATCA
CATCACAGCCGGTCGCGGAACAAATCTGCATGACCGTTATCACGTTGTGA
CCGATGCGGTTCCTACCGCTGTAGGAGAGCGTGCGTACGTTGAACGTGCC
AAACGATAGGTCGCCCTCTCGTGCCTTCTTCTTCGCAGCCGCCTTGACGG
TCGCTGCGGTCTCGTGTCTCTCTCGGTCCACCTCGCGTTGCGGGTGTGCT
TTCTTCCGTATTTTCCGAGCCGCGACTTTCCTCGCATCAATCCATCTCTG
CAGAGCTCGGTTCTTGCCTGTGGTGTTTTGACGAGGAGGGTGCAGCACTC
CCTCCCCGCGGTGCCCGCGGTTGTCTCCCTTCTCCCGCGAGCGGTGCTTA
CTGACGTGGTGTTTACGAATCTCTCTACTCCTCCAGCTTCGTGGGCCACG
CTTTCCGCGACGGTGGTTGCCAGGTGCAGTTTGCCGCTTTGCATTACTGC
CGCGGGAACAGTGTCCATACACACCTCTCGCCACTACCACCGTCTGTGCA
TCCTCACCGCCACGCTGAGCCAGCGCGGCGGTGAGTTGCACCTTGGGACA
CCACCCGCCTACTATCTGTTGTGGCCTGGTTCGCCCGCGAGGGACTCACT
AGGTCGATTTCGGCCCCGGCCGGGGAGCAGGCCGAGGGG

Coding sequence (CDS) from alignment at Scaffold_448:74817..77755-

>EsuBft1102_2a-0001 ID=EsuBft1102_2a-0001|Name=EsuBft1102_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=162bp|location=Sequence derived from alignment at Scaffold_448:74817..77755- (Ectocarpus subulatus male Bft15b)
ATGGTCGTACTAACTGCTTCTGCTTCCCTCGCGCGCTGGCGCTTCGCGGA
CGCTTCCGCCTCCTGCCTGTGCCATTTCCTCATGAACCATGCCGCCCCGT
CCTCGACCTTGTTGTACCACACCTCCGAGTTCTTGGCGCTCTCTTTCCAT
TTACCCCCNNNN