EsuBft1102_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1102_11a-0001
Unique NameEsuBft1102_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_448contigScaffold_448:17641..21609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FW25
ProteomeIdEsuBft1102_11
Protein domainsTMhelix
Protein domainsPTHR31651
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsIPR004776
Ownerapollo_admin@sb-roscoff.fr
Nb exon7
Max annot lvl2759|Eukaryota
Length138
Hectar predicted targeting categorysignal peptide
Evalue1.73e-250
EggNOG OGs2E8NN@1|root,2SF47@2759|Eukaryota
Ec32 ortholog descriptionAuxin efflux carrier
Ec32 orthologEc-01_003110.3
Date last modified2016-06-13
Date creation2016-06-13
Cross References
External references for this mRNA
DatabaseAccession
GO0055085
GO0016021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1102_11aEsuBft1102_11aEctocarpus subulatus male Bft15bgeneScaffold_448 17641..21609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1102_11a-0001EsuBft1102_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_448 17641..21609 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1102_11a-0001-exonagat-exon-51117Ectocarpus subulatus male Bft15bexonScaffold_448 17641..17746 +
EsuBft1102_11a-0001-exonagat-exon-51118Ectocarpus subulatus male Bft15bexonScaffold_448 18326..18641 +
EsuBft1102_11a-0001-exonagat-exon-51114Ectocarpus subulatus male Bft15bexonScaffold_448 19323..19398 +
EsuBft1102_11a-0001-exonagat-exon-51116Ectocarpus subulatus male Bft15bexonScaffold_448 19724..20173 +
EsuBft1102_11a-0001-exonagat-exon-51119Ectocarpus subulatus male Bft15bexonScaffold_448 20408..20590 +
EsuBft1102_11a-0001-exonEsuBft1102_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_448 20961..21077 +
EsuBft1102_11a-0001-exonagat-exon-51115Ectocarpus subulatus male Bft15bexonScaffold_448 21472..21609 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1102_11a-0001-cdsEsuBft1102_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_448 17641..17746 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1102_11a-0001 ID=EsuBft1102_11a-0001|Name=EsuBft1102_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1386bp|location=Sequence derived from alignment at Scaffold_448:17641..21609+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCGATCATAACAGCTCTTTCGACAAGTGTTCTCGGCACTCTGCG
GGTGCTTGCGATCCTCCTTGCCGGATTCTTCGCGTCCAGATGGCCGAAAA
GTGAACCGCTCCTCGCCAAGGAGACCTGCCGCGCGTTTAGCCGGGCCTGC
GCGCTCCTCTTTCTGCCTTCGCTGATGATCTCAAGCTTGGGAGCTACCCT
AAATCCGGAGGCACTGAAAAATTCGTGGCAGCTGGTGGTAGCCGGGAGCT
TCACGGTTGCTCTTTCGGGAACCGTTGCGTGGGTGGTCGGGCGAGTTTTC
TTCCGGAGGCCTGAAGATCGCCGCGCCTTCCGTCCCGCTGGGCTGGCAAT
CACGTTCGCGAACTCAGCGGGGTTTCCGCTCCTGCTGATGAACGCTTTGT
GCGAGCAAGACTACGTCAGAAGTGACTACAATGACGACGCTTTGGAGTGC
TTCACACAAGCAACGGGCATGATCTTCATCTACGTGGTCGTCTGGCAGAT
GTACTTTTTTGGATGGGGATTCTACGCCCTTGGGCACGACGACACTTTGG
AGCGTAGCCTCACCGGACAGCAGACCAGGACACGAACACCTTCAACCAAA
ACCCGTGCTGCCGCAAGAGCTACGTCCTCAACGTCATCGGCGCGTCAAGA
GCACGGCGGAGTCGGTCGCATCAACGCGGCGGAAGCAGTGGTCATCGACA
TCGAGCCGTGCACGGGAGAAGAAAGCAGCAGCGAGGGAACGACGAATGCT
GGTGGCACGGAGGATGGTGGCGATGTTAGCGAGGGGGGTCCGTGGGCGGG
ATTCAAAGAGCGGGTCTCGCGTGTTCTGGTGTCCCCGAATATCATCTCCG
TCACGATCGGTGTGGTTATCGCTATGATTGCCCCGCTGCAAGAGATGCTT
TTCGACAACTCGCGGTCGATACTGCGGCCGCTGGGGGCCGCTCTTCAGAC
GGTGGGGACACCCGAGGTGGCGGTGTCAACGCTGGTGATGGCCGGCAGTC
TGGCGCAGGTTCCCACCGTGGCAGCGGCATCAACACAAGGGGGACAGGGT
GATGACGACGGCACCCTGCGGAGAAAGCGTCGCTTCCGAATCATCGCGGG
CTTCCTTCACGTGGTGTGCCGCCTCATAGTGGTACCTGCCATCGGGTTCA
CCTTGTTTTGGGTGGCAAGGACACAAAGCTCGGTGATGGGGGAAAATCGC
CTGATGCACCTGATCCTGCTCATCGAGTTCGCCATGCCGTCGGCGGCGTT
TGTGATCGTGTCCCTGAACCAGCTACGGATGCCGGCGACCGCAGGCTTTA
TGGCCCGGCTGTACCTGTGGCAGTACGGGGCGTCGATGCTTACGATCACT
GCGTGGACGGCGTTGGCCGTACACCTCGTGTACTGA
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protein sequence of EsuBft1102_11a-0001

>EsuBft1102_11 ID=EsuBft1102_11|Name=EsuBft1102_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=461bp
MDAIITALSTSVLGTLRVLAILLAGFFASRWPKSEPLLAKETCRAFSRAC
ALLFLPSLMISSLGATLNPEALKNSWQLVVAGSFTVALSGTVAWVVGRVF
FRRPEDRRAFRPAGLAITFANSAGFPLLLMNALCEQDYVRSDYNDDALEC
FTQATGMIFIYVVVWQMYFFGWGFYALGHDDTLERSLTGQQTRTRTPSTK
TRAAARATSSTSSARQEHGGVGRINAAEAVVIDIEPCTGEESSSEGTTNA
GGTEDGGDVSEGGPWAGFKERVSRVLVSPNIISVTIGVVIAMIAPLQEML
FDNSRSILRPLGAALQTVGTPEVAVSTLVMAGSLAQVPTVAAASTQGGQG
DDDGTLRRKRRFRIIAGFLHVVCRLIVVPAIGFTLFWVARTQSSVMGENR
LMHLILLIEFAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTIT
AWTALAVHLVY
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mRNA from alignment at Scaffold_448:17641..21609+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1102_11a-0001 ID=EsuBft1102_11a-0001|Name=EsuBft1102_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3969bp|location=Sequence derived from alignment at Scaffold_448:17641..21609+ (Ectocarpus subulatus male Bft15b)
ATGGATGCGATCATAACAGCTCTTTCGACAAGTGTTCTCGGCACTCTGCG
GGTGCTTGCGATCCTCCTTGCCGGATTCTTCGCGTCCAGATGGCCGAAAA
GTGAACGTGGGTCAACCAAACACATGTGTGCTGGACTTGTCATGTTCTTG
GTACAGTCTAGTCTATGCAACGGAGATCTGTCTTGTGTTCATGTAAATGC
AACGATCCATCAACATGAACGTCCTACATATATATGCACGTATGGCCAGT
GTGGTGCAGGATTTGGTGGGATGCGCACCGCTTCTATGCATATAAAGGCT
GCGACTTAGAATGTAGCTGTGGACTGTAGAATATTGTCGTAGAAAGGTTA
CTCGAGGAAGGTTGGGAGGACGAGCTTGGTGTGCCACAATTTAGCCCGCC
CTGCCGGTTGGATAAACCCTTCAATTAGCGATGACAGCGTTCGCTGTGCG
TGGTGTCGTGCAACCTCTCGGTCATAGTCATGTTGTGGTTCGTGCTCTTT
CAACCTGCTAATGTTGTCTTTCGCAGCTTGCTTCAATCTGTTCTGCTTAC
CTTTTGCAATCGCGCCGTTGCTGATGCAGTTCTTCTAGGCATATACCACT
ACACTGCTGTGATCATGACTCCTCTGGATTTTATGTGTATTCCTGGGATG
ACGTTGTTTGTTCGTACTCACGCACTCTGTCGCAGCGCTCCTCGCCAAGG
AGACCTGCCGCGCGTTTAGCCGGGCCTGCGCGCTCCTCTTTCTGCCTTCG
CTGATGATCTCAAGCTTGGGAGCTACCCTAAATCCGGAGGCACTGAAAAA
TTCGTGGCAGCTGGTGGTAGCCGGGAGCTTCACGGTTGCTCTTTCGGGAA
CCGTTGCGTGGGTGGTCGGGCGAGTTTTCTTCCGGAGGCCTGAAGATCGC
CGCGCCTTCCGTCCCGCTGGGCTGGCAATCACGTTCGCGAACTCAGCGGG
GTTTCCGCTCCTGCTGATGAACGCTTTGTGCGAGCAAGACTACGTCAGAA
GGTGATTTGATTCATTGAACCAGCTTCGTGGAAGCAGGGTTGTTCTTTAT
TCCTTCACAAGTTGCAAACCGTTGGGACCTCCACTACAGTAAGTACCAAG
CACTTGCCGTAACGAAACCTGAAAACATGGACGACACCCGGAGAAACTTA
CCCGCTAACTTGAAGACTTGAAACGCAACGCAGGACACGCCCGTACTTTT
TTTTTTATCCCGGAAGTCGAGCAATAGACGAAATGTGCGTACATGGAGCA
TACTCACTACCAAAAATGACGTGACCCTGAGGAGCTCGAAACTTGACGTT
CGATCGTTCGATGCTAGCGTCTTTGCCTACACCTTCGATGAATTCCCAAT
AACTGCTCTTACACGCTTTGTGTTGCTACACTCCATGCAAAGTCTACCCA
CTTAGCGCGGCATTGTTGCCTGCGCCCAATACGTTTGCGGCGGTGAGTAC
GCTCGCAAGCGGCCAGCCGGTATAAAGTCTAGTGTCATATCTGTGTGCAC
TAATAGGTCAATCAAGCCCAACTATGTCGTGGCACAATGAGCTGCAGAAT
CGCTCTCTTATCGTGTTGGCCATCATGTACCGGTCATCACGAAGGGCGGC
CCATGAGTCATGACGTACGCCAGCTCCACACACCACCATCGCCGCCACGA
ATGTGCTGATGAACCCCGTAACGGAACGACAGTGACTACAATGACGACGC
TTTGGAGTGCTTCACACAAGCAACGGGCATGATCTTCATCTACGTGGTCG
TCTGGCAGGTGAACAGTGGGGCAGGGTCGGATAGACGTTGTTAGCGAGTG
CTAAGCGAGTGCTAAGCGAGATCTAAGCAATAGATCCAACAGTATGAGCG
ATCATTATCGCTTCACTCGTCAAGCTACGGATAAAAAAATGACAATTCCG
GGTGCAGTAGAGACGTAACCGACTGTACGCACACCAACTGATATTATTAA
GCTAGCCTGTAGTGATATTGACGCACAGTATTGGCGGTACTTCGAGGACG
AGAAACCCCGCCTACCCCCAAGCAAACCATCGCATCTGGTGCGAACAACT
GGCTGCACCCTTCGGCGGTGTGCGCGTCGTCAGATGTACTTTTTTGGATG
GGGATTCTACGCCCTTGGGCACGACGACACTTTGGAGCGTAGCCTCACCG
GACAGCAGACCAGGACACGAACACCTTCAACCAAAACCCGTGCTGCCGCA
AGAGCTACGTCCTCAACGTCATCGGCGCGTCAAGAGCACGGCGGAGTCGG
TCGCATCAACGCGGCGGAAGCAGTGGTCATCGACATCGAGCCGTGCACGG
GAGAAGAAAGCAGCAGCGAGGGAACGACGAATGCTGGTGGCACGGAGGAT
GGTGGCGATGTTAGCGAGGGGGGTCCGTGGGCGGGATTCAAAGAGCGGGT
CTCGCGTGTTCTGGTGTCCCCGAATATCATCTCCGTCACGATCGGTGTGG
TTATCGCTATGATTGCCCCGCTGCAAGAGATGCTTTTCGACAACTCGCGG
TCGATACTGCGGCCGCTGGGGGCCGCTCTTCAGGTGATCTCTTAGAATGA
ACGGCTCTGAAATATTCTTCATAGTGGGCTACCCGAAGCATCGATTTTTT
CAGGTTGACTGTTTCGAACCGGTTCGATTCTGTTTTTTCTAGTCCGTGCT
TCGTCTCCAACCCCCTCGAGCAATACGATGTGTGTAGTGGCACACACCGC
CGTTCCTCTATCGTCTGTGTCTGACAAGTATTCGCCGTCGGACATCGCAT
GTTTTGCTCGTGACCAGACGGTGGGGACACCCGAGGTGGCGGTGTCAACG
CTGGTGATGGCCGGCAGTCTGGCGCAGGTTCCCACCGTGGCAGCGGCATC
AACACAAGGGGGACAGGGTGATGACGACGGCACCCTGCGGAGAAAGCGTC
GCTTCCGAATCATCGCGGGCTTCCTTCACGTGGTGTGCCGCCTCATAGTG
GTAAGTGAGCCCCTGCTGCATCAATTGAGGCTACGGCTAACTTGGACGGA
AATTGGTATTGGTTGATCGATTTTTTGGCACTTTATCGTTTGGACCAGTA
ATCTGCATTGAAAACGTGTATTTTCATCGACATGTACTCAATAACTACGC
GCTCGTTCTTCCCGACGATCTCAACTTTGGCCGTTAGTGTCAGATGTCAC
ACACGGACCAAAATATCTAGAGGTGGAGGCTTCAGGTTCAACGAGCATTT
GCCCTGTTTTCATCCCACATGCATTCCCCTACCCTCCTCGAGACCTCGGT
CGCTCTACCCCTTACCTGACTGTCCGGTCAAACCCGTGACCAATCGCTGC
TATCTGTCCACATGTTGAAGGTACCTGCCATCGGGTTCACCTTGTTTTGG
GTGGCAAGGACACAAAGCTCGGTGATGGGGGAAAATCGCCTGATGCACCT
GATCCTGCTCATCGAGTTCGCCATGCCGTCGGCGGCGGTGAGAGGGGGGT
GTTTTATTCTGCCAGATTGTTGATGAGTGTGATATACGTTTGCTTCGTTT
CCGCGGGCGTGTGGGCGTGAGCCGTTCGAGAAGGACCGTGGCGGCGCACA
GGTGGCAGAGCCAGGTTGGCCACGCCTAGAATAGAACGTGACTACCTGTT
TTTGACAGAGAGTACATATGAAGATGACAGACGTGGATTGTTTTAGCGGT
TCAGGATAGGATGAGCCGCTGCGGCTGTACTTCTCTTCAAGATAAGCGCC
CAGTACCACCGGTGGTTAGCGCTGAAGAGAACCCGAAATACCCTACCGGG
AAAGCACCCATCGCCTTCGTCACGCACGTGCGCACGTGATGACCCATCAC
CCTGGTTATCCCTCCATGAATTCTTCCACAGTTTGTGATCGTGTCCCTGA
ACCAGCTACGGATGCCGGCGACCGCAGGCTTTATGGCCCGGCTGTACCTG
TGGCAGTACGGGGCGTCGATGCTTACGATCACTGCGTGGACGGCGTTGGC
CGTACACCTCGTGTACTGA
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Coding sequence (CDS) from alignment at Scaffold_448:17641..21609+

>EsuBft1102_11a-0001 ID=EsuBft1102_11a-0001|Name=EsuBft1102_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1386bp|location=Sequence derived from alignment at Scaffold_448:17641..21609+ (Ectocarpus subulatus male Bft15b)
ATGGATGCGATCATAACAGCTCTTTCGACAAGTGTTCTCGGCACTCTGCG
GGTGCTTGCGATCCTCCTTGCCGGATTCTTCGCGTCCAGATGGCCGAAAA
GTGAACCGCTCCTCGCCAAGGAGACCTGCCGCGCGTTTAGCCGGGCCTGC
GCGCTCCTCTTTCTGCCTTCGCTGATGATCTCAAGCTTGGGAGCTACCCT
AAATCCGGAGGCACTGAAAAATTCGTGGCAGCTGGTGGTAGCCGGGAGCT
TCACGGTTGCTCTTTCGGGAACCGTTGCGTGGGTGGTCGGGCGAGTTTTC
TTCCGGAGGCCTGAAGATCGCCGCGCCTTCCGTCCCGCTGGGCTGGCAAT
CACGTTCGCGAACTCAGCGGGGTTTCCGCTCCTGCTGATGAACGCTTTGT
GCGAGCAAGACTACGTCAGAAGTGACTACAATGACGACGCTTTGGAGTGC
TTCACACAAGCAACGGGCATGATCTTCATCTACGTGGTCGTCTGGCAGAT
GTACTTTTTTGGATGGGGATTCTACGCCCTTGGGCACGACGACACTTTGG
AGCGTAGCCTCACCGGACAGCAGACCAGGACACGAACACCTTCAACCAAA
ACCCGTGCTGCCGCAAGAGCTACGTCCTCAACGTCATCGGCGCGTCAAGA
GCACGGCGGAGTCGGTCGCATCAACGCGGCGGAAGCAGTGGTCATCGACA
TCGAGCCGTGCACGGGAGAAGAAAGCAGCAGCGAGGGAACGACGAATGCT
GGTGGCACGGAGGATGGTGGCGATGTTAGCGAGGGGGGTCCGTGGGCGGG
ATTCAAAGAGCGGGTCTCGCGTGTTCTGGTGTCCCCGAATATCATCTCCG
TCACGATCGGTGTGGTTATCGCTATGATTGCCCCGCTGCAAGAGATGCTT
TTCGACAACTCGCGGTCGATACTGCGGCCGCTGGGGGCCGCTCTTCAGAC
GGTGGGGACACCCGAGGTGGCGGTGTCAACGCTGGTGATGGCCGGCAGTC
TGGCGCAGGTTCCCACCGTGGCAGCGGCATCAACACAAGGGGGACAGGGT
GATGACGACGGCACCCTGCGGAGAAAGCGTCGCTTCCGAATCATCGCGGG
CTTCCTTCACGTGGTGTGCCGCCTCATAGTGGTACCTGCCATCGGGTTCA
CCTTGTTTTGGGTGGCAAGGACACAAAGCTCGGTGATGGGGGAAAATCGC
CTGATGCACCTGATCCTGCTCATCGAGTTCGCCATGCCGTCGGCGGCGTT
TGTGATCGTGTCCCTGAACCAGCTACGGATGCCGGCGACCGCAGGCTTTA
TGGCCCGGCTGTACCTGTGGCAGTACGGGGCGTCGATGCTTACGATCACT
GCGTGGACGGCGTTGGCCGTACACCTCGTGTACTGA
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