EsuBft11024_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft11024_2a-0001
Unique NameEsuBft11024_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_2contigScaffold_2:101047..101670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft11024_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length36
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft11024_2aEsuBft11024_2aEctocarpus subulatus male Bft15bgeneScaffold_2 101047..101670 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft11024_2a-0001-exonEsuBft11024_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_2 101047..101249 +
EsuBft11024_2a-0001-exonagat-exon-55466Ectocarpus subulatus male Bft15bexonScaffold_2 101511..101670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft11024_2a-0001-cdsEsuBft11024_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_2 101047..101249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft11024_2a-0001EsuBft11024_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_2 101047..101670 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft11024_2a-0001 ID=EsuBft11024_2a-0001|Name=EsuBft11024_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=363bp|location=Sequence derived from alignment at Scaffold_2:101047..101670+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAGCTGACGAAGGTGAAGACCCCCCCCCTGGACCACTTTCGGGC
CTGCCTCGCTGCCGCCCTGCCCTGGAAGAAAGCCTCTTTGAAGATGATGC
GGGAGTGGCGCGCGGCACTGCATCGTCTACGAAACACCCGAATCGAGGGC
GTCAACGCAGCTCACGACGATCCAAAAGATTCGGAGGACGGGGAGTGGTT
AAGGTGGCTCCGTCAGCGTGCGGCAGTGGATGTCTGCCACGACGACACCT
GCTGTCCCGAAGCCAAGCTCCTCAAGGATGCCGTCAAGACACACCCCATC
GAGGCGGACGACACGGAGGAACCTGTGGCTAGCGCCGAGCCCAAGAGCGA
AGCGGGAGGGTAG
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protein sequence of EsuBft11024_2a-0001

>EsuBft11024_2 ID=EsuBft11024_2|Name=EsuBft11024_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=120bp
MAELTKVKTPPLDHFRACLAAALPWKKASLKMMREWRAALHRLRNTRIEG
VNAAHDDPKDSEDGEWLRWLRQRAAVDVCHDDTCCPEAKLLKDAVKTHPI
EADDTEEPVASAEPKSEAGG
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mRNA from alignment at Scaffold_2:101047..101670+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft11024_2a-0001 ID=EsuBft11024_2a-0001|Name=EsuBft11024_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=624bp|location=Sequence derived from alignment at Scaffold_2:101047..101670+ (Ectocarpus subulatus male Bft15b)
ATGGCAGAGCTGACGAAGGTGAAGACCCCCCCCCTGGACCACTTTCGGGC
CTGCCTCGCTGCCGCCCTGCCCTGGAAGAAAGCCTCTTTGAAGATGATGC
GGGAGTGGCGCGCGGCACTGCATCGTCTACGAAACACCCGAATCGAGGGC
GTCAACGCAGCTCACGACGATCCAAAAGATTCGGAGGACGGGGAGTGGTT
AAGGTACTCGTGGGGAACCCCATGCCGACAGCCAATAGGTACGTGGGAAG
CTCATAAGTCCATGGGCATTCATGGTTTTGAGTACAGACTCATGCGCCAG
GGGTAGACTTGCGAAACTAACGACAGACGTCTCCACGTCCTCGCCCACGA
CTCCCCGTCCTCGTTCCTGTGCGCTTGGACTTGTACGGTTGGCTGGTTGA
TTAACCTCGACGTGCTATCCGTGCTACCTTGCCCTGCTTTCTTACCATGT
CGTGATCCTCGCAGGTGGCTCCGTCAGCGTGCGGCAGTGGATGTCTGCCA
CGACGACACCTGCTGTCCCGAAGCCAAGCTCCTCAAGGATGCCGTCAAGA
CACACCCCATCGAGGCGGACGACACGGAGGAACCTGTGGCTAGCGCCGAG
CCCAAGAGCGAAGCGGGAGGGTAG
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Coding sequence (CDS) from alignment at Scaffold_2:101047..101670+

>EsuBft11024_2a-0001 ID=EsuBft11024_2a-0001|Name=EsuBft11024_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=363bp|location=Sequence derived from alignment at Scaffold_2:101047..101670+ (Ectocarpus subulatus male Bft15b)
ATGGCAGAGCTGACGAAGGTGAAGACCCCCCCCCTGGACCACTTTCGGGC
CTGCCTCGCTGCCGCCCTGCCCTGGAAGAAAGCCTCTTTGAAGATGATGC
GGGAGTGGCGCGCGGCACTGCATCGTCTACGAAACACCCGAATCGAGGGC
GTCAACGCAGCTCACGACGATCCAAAAGATTCGGAGGACGGGGAGTGGTT
AAGGTGGCTCCGTCAGCGTGCGGCAGTGGATGTCTGCCACGACGACACCT
GCTGTCCCGAAGCCAAGCTCCTCAAGGATGCCGTCAAGACACACCCCATC
GAGGCGGACGACACGGAGGAACCTGTGGCTAGCGCCGAGCCCAAGAGCGA
AGCGGGAGGGTAG
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