EsuBft1101_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1101_5a-0001
Unique NameEsuBft1101_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_405contigScaffold_405:171343..173071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog67593.Physo141588
ProteomeIdEsuBft1101_5
Protein domainsIPR013103
Protein domainsPTHR11439
Protein domainsIPR012337
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon2
Max annot lvl4776|Peronosporales
Length1643
Hectar predicted targeting categoryother localisation
Evalue9.35e-85
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHJF@4776|Peronosporales
Date last modified2016-06-14
Date creation2016-06-14
Descriptiongag-polypeptide of LTR copia-type
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0003824
GO0044424
GO0090304
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1101_5aEsuBft1101_5aEctocarpus subulatus male Bft15bgeneScaffold_405 171343..173071 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1101_5a-0001-exonEsuBft1101_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_405 171343..172978 -
EsuBft1101_5a-0001-exonagat-exon-39083Ectocarpus subulatus male Bft15bexonScaffold_405 173065..173071 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1101_5a-0001-exonagat-three_prime_utr-979Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_405 171343..171566 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1101_5a-0001-cdsEsuBft1101_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_405 171567..172978 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1101_5a-0001EsuBft1101_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_405 171567..173071 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1101_5a-0001 ID=EsuBft1101_5a-0001|Name=EsuBft1101_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1643bp|location=Sequence derived from alignment at Scaffold_405:171343..173071- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGAGAACGCCATCAATGCCAAGTGGGTTTTTAACTGTAAAGCAGA
CGAGTACGGATGGCCGACTAAATTCAAGGCAAGACTTGTAGCACGGGGGG
ACATGCAGAGGGCTTCGATTGATTTTGGAGAATTGTTTGCACCCACCGTA
TCAGTGTCTAGTGTGCGCTTGTTGGCAGCATTAGCATGTGAGCAGAATCT
TGACTTGTGCCATTTCGATGTTCAGCAGGCTTTTGTGCAGTCTGAGCTTG
ATGAGGATGTTTTCATGCGCTTACCGCAGGGTTGTGGTAGGTTATCTGGC
CTGATCGTGAAGCTGTGCAAGAGTCTGTATGGTTTGAAGCAGGCATCACG
ACATTGGCATGCGCACCTGACGAGGTGTTTGTTACTTTTAGGTTTTTTGC
AGTGTCTGGCGGATGCATGTGTTTTTCGATTGATGGAGGAGGGACGTGTG
ATCATGATCATCGTGGTCCACGTAGATGATATTTTTGCCGTAGGGCAGAA
GGAGAGGTGTGACAAGTTTGGCAGGGATCTCAACGAGATGGTCCCCGTGA
AGAACCTTGGAGAGTTGAGGTGGTACTCCGCGTGCTTTTACGAGAGAGAC
GTAGAGAGAGGGCTGCTGAAGATTTCACAACAGAGGTTTGCCGAAGAGTT
GGCTGCGGAGTATGGCGTTGAGTGGGGGCAGAGTGTGCCTCTGCCTGTTA
GCGTAAAGCTCACCGACTTTGACGTGAATGAAGCGAGTGCTGACGTCCCT
TTTCGCGAGTTGGTAGGATCTCTGATGTGGTTGGCCACTCAAACAAGGCC
GGACATCGCGAATGCAGTACGAGCAGTAGCGCGGTATTGCGCGTCTCCCA
AGATGGTGCACTGGAAGGCAGCACTCGGTATTTTAGGGTACGTACGCAGG
ACGAGTTGGATGGGGATTACATTTGAGAGGGGCGTCGTGACAGGTATGAG
CATGCAGGTGTTTGTGGATGCCGACTATGCAAGCAAGGCGGCAGACCGGA
GGTCGGTATCAGGGGGGCTAGTGATGTGTGGGGGGGGGTGTGTGACTTGG
TTTTCACGAACGCAGAAATGCGTCACCCTTTCCACCACGGAAGCAGAGTA
TGTGGCAATTGCCGACGTCTTGAAGGAAGTGTTGTTCTTAAGGCAGGTGT
GGCGTTTTATGTTGCCAGATGCGGGTATGCCGTGCATCCCGGTGTTCGAG
GATAATCAGGGAGCGATTCAGATTGCGCACAACCCGATCACGAACTCCAA
CTCGAAGCACATCGATGTACGGCATCACTTTATCAGGGAGCTGGTAGAGA
GGAAGGAGATTACTATTACTCATGTGCCGACGCAATTTCAGCATGCAGAC
TTCTTGACGAAGGCTATTAGCAAGGAGTCTTTTGCGTTGCACCGTGACTT
TGTGATGAACTTGCAGTGAAGGAAGTGTTTTGGGGTCGATTCGTATTCTG
TAGTAGAGAGAGAAAGAGAAAGACGAGATTGGACAAGAGAAAGAGAGAGT
CCGATGAAGATCGTAGGAGTTTTGGTTGTGTTGGTATTTTTTTCTTGATT
ATTTTGGAGGAGTATTGGTTGTGTTGGAATTTTTCTTGATTGTCTTGGAG
GAGTTTTTCTTGTTTTGGAGATGATGGTAACGGTGAGGGTAAT
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protein sequence of EsuBft1101_5a-0001

>EsuBft1101_5 ID=EsuBft1101_5|Name=EsuBft1101_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=472bp
MGENAINAKWVFNCKADEYGWPTKFKARLVARGDMQRASIDFGELFAPTV
SVSSVRLLAALACEQNLDLCHFDVQQAFVQSELDEDVFMRLPQGCGRLSG
LIVKLCKSLYGLKQASRHWHAHLTRCLLLLGFLQCLADACVFRLMEEGRV
IMIIVVHVDDIFAVGQKERCDKFGRDLNEMVPVKNLGELRWYSACFYERD
VERGLLKISQQRFAEELAAEYGVEWGQSVPLPVSVKLTDFDVNEASADVP
FRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRR
TSWMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTW
FSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFE
DNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEITITHVPTQFQHAD
FLTKAISKESFALHRDFVMNLQ
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mRNA from alignment at Scaffold_405:171343..173071-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1101_5a-0001 ID=EsuBft1101_5a-0001|Name=EsuBft1101_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1729bp|location=Sequence derived from alignment at Scaffold_405:171343..173071- (Ectocarpus subulatus male Bft15b)
ATGGGTGGTATGTTCTTGGCTGTACTGCAGTCGGTCGAGAGTTTTTCGGT
TTGCTGGATGCAGGAACTTTTAGTCCGGTGTAGCAACCAGTAGAGAACGC
CATCAATGCCAAGTGGGTTTTTAACTGTAAAGCAGACGAGTACGGATGGC
CGACTAAATTCAAGGCAAGACTTGTAGCACGGGGGGACATGCAGAGGGCT
TCGATTGATTTTGGAGAATTGTTTGCACCCACCGTATCAGTGTCTAGTGT
GCGCTTGTTGGCAGCATTAGCATGTGAGCAGAATCTTGACTTGTGCCATT
TCGATGTTCAGCAGGCTTTTGTGCAGTCTGAGCTTGATGAGGATGTTTTC
ATGCGCTTACCGCAGGGTTGTGGTAGGTTATCTGGCCTGATCGTGAAGCT
GTGCAAGAGTCTGTATGGTTTGAAGCAGGCATCACGACATTGGCATGCGC
ACCTGACGAGGTGTTTGTTACTTTTAGGTTTTTTGCAGTGTCTGGCGGAT
GCATGTGTTTTTCGATTGATGGAGGAGGGACGTGTGATCATGATCATCGT
GGTCCACGTAGATGATATTTTTGCCGTAGGGCAGAAGGAGAGGTGTGACA
AGTTTGGCAGGGATCTCAACGAGATGGTCCCCGTGAAGAACCTTGGAGAG
TTGAGGTGGTACTCCGCGTGCTTTTACGAGAGAGACGTAGAGAGAGGGCT
GCTGAAGATTTCACAACAGAGGTTTGCCGAAGAGTTGGCTGCGGAGTATG
GCGTTGAGTGGGGGCAGAGTGTGCCTCTGCCTGTTAGCGTAAAGCTCACC
GACTTTGACGTGAATGAAGCGAGTGCTGACGTCCCTTTTCGCGAGTTGGT
AGGATCTCTGATGTGGTTGGCCACTCAAACAAGGCCGGACATCGCGAATG
CAGTACGAGCAGTAGCGCGGTATTGCGCGTCTCCCAAGATGGTGCACTGG
AAGGCAGCACTCGGTATTTTAGGGTACGTACGCAGGACGAGTTGGATGGG
GATTACATTTGAGAGGGGCGTCGTGACAGGTATGAGCATGCAGGTGTTTG
TGGATGCCGACTATGCAAGCAAGGCGGCAGACCGGAGGTCGGTATCAGGG
GGGCTAGTGATGTGTGGGGGGGGGTGTGTGACTTGGTTTTCACGAACGCA
GAAATGCGTCACCCTTTCCACCACGGAAGCAGAGTATGTGGCAATTGCCG
ACGTCTTGAAGGAAGTGTTGTTCTTAAGGCAGGTGTGGCGTTTTATGTTG
CCAGATGCGGGTATGCCGTGCATCCCGGTGTTCGAGGATAATCAGGGAGC
GATTCAGATTGCGCACAACCCGATCACGAACTCCAACTCGAAGCACATCG
ATGTACGGCATCACTTTATCAGGGAGCTGGTAGAGAGGAAGGAGATTACT
ATTACTCATGTGCCGACGCAATTTCAGCATGCAGACTTCTTGACGAAGGC
TATTAGCAAGGAGTCTTTTGCGTTGCACCGTGACTTTGTGATGAACTTGC
AGTGAAGGAAGTGTTTTGGGGTCGATTCGTATTCTGTAGTAGAGAGAGAA
AGAGAAAGACGAGATTGGACAAGAGAAAGAGAGAGTCCGATGAAGATCGT
AGGAGTTTTGGTTGTGTTGGTATTTTTTTCTTGATTATTTTGGAGGAGTA
TTGGTTGTGTTGGAATTTTTCTTGATTGTCTTGGAGGAGTTTTTCTTGTT
TTGGAGATGATGGTAACGGTGAGGGTAAT
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Coding sequence (CDS) from alignment at Scaffold_405:171343..173071-

>EsuBft1101_5a-0001 ID=EsuBft1101_5a-0001|Name=EsuBft1101_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1419bp|location=Sequence derived from alignment at Scaffold_405:171343..173071- (Ectocarpus subulatus male Bft15b)
ATGGGTGAGAACGCCATCAATGCCAAGTGGGTTTTTAACTGTAAAGCAGA
CGAGTACGGATGGCCGACTAAATTCAAGGCAAGACTTGTAGCACGGGGGG
ACATGCAGAGGGCTTCGATTGATTTTGGAGAATTGTTTGCACCCACCGTA
TCAGTGTCTAGTGTGCGCTTGTTGGCAGCATTAGCATGTGAGCAGAATCT
TGACTTGTGCCATTTCGATGTTCAGCAGGCTTTTGTGCAGTCTGAGCTTG
ATGAGGATGTTTTCATGCGCTTACCGCAGGGTTGTGGTAGGTTATCTGGC
CTGATCGTGAAGCTGTGCAAGAGTCTGTATGGTTTGAAGCAGGCATCACG
ACATTGGCATGCGCACCTGACGAGGTGTTTGTTACTTTTAGGTTTTTTGC
AGTGTCTGGCGGATGCATGTGTTTTTCGATTGATGGAGGAGGGACGTGTG
ATCATGATCATCGTGGTCCACGTAGATGATATTTTTGCCGTAGGGCAGAA
GGAGAGGTGTGACAAGTTTGGCAGGGATCTCAACGAGATGGTCCCCGTGA
AGAACCTTGGAGAGTTGAGGTGGTACTCCGCGTGCTTTTACGAGAGAGAC
GTAGAGAGAGGGCTGCTGAAGATTTCACAACAGAGGTTTGCCGAAGAGTT
GGCTGCGGAGTATGGCGTTGAGTGGGGGCAGAGTGTGCCTCTGCCTGTTA
GCGTAAAGCTCACCGACTTTGACGTGAATGAAGCGAGTGCTGACGTCCCT
TTTCGCGAGTTGGTAGGATCTCTGATGTGGTTGGCCACTCAAACAAGGCC
GGACATCGCGAATGCAGTACGAGCAGTAGCGCGGTATTGCGCGTCTCCCA
AGATGGTGCACTGGAAGGCAGCACTCGGTATTTTAGGGTACGTACGCAGG
ACGAGTTGGATGGGGATTACATTTGAGAGGGGCGTCGTGACAGGTATGAG
CATGCAGGTGTTTGTGGATGCCGACTATGCAAGCAAGGCGGCAGACCGGA
GGTCGGTATCAGGGGGGCTAGTGATGTGTGGGGGGGGGTGTGTGACTTGG
TTTTCACGAACGCAGAAATGCGTCACCCTTTCCACCACGGAAGCAGAGTA
TGTGGCAATTGCCGACGTCTTGAAGGAAGTGTTGTTCTTAAGGCAGGTGT
GGCGTTTTATGTTGCCAGATGCGGGTATGCCGTGCATCCCGGTGTTCGAG
GATAATCAGGGAGCGATTCAGATTGCGCACAACCCGATCACGAACTCCAA
CTCGAAGCACATCGATGTACGGCATCACTTTATCAGGGAGCTGGTAGAGA
GGAAGGAGATTACTATTACTCATGTGCCGACGCAATTTCAGCATGCAGAC
TTCTTGACGAAGGCTATTAGCAAGGAGTCTTTTGCGTTGCACCGTGACTT
TGTGATGAACTTGCAGTGA
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