EsuBft1101_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1101_3a-0001
Unique NameEsuBft1101_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_405contigScaffold_405:137685..142433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1101_3
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCoil
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Length203
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_004760.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1101_3aEsuBft1101_3aEctocarpus subulatus male Bft15bgeneScaffold_405 137685..142433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1101_3a-0001EsuBft1101_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_405 137761..141237 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1101_3a-0001-exonagat-exon-39059Ectocarpus subulatus male Bft15bexonScaffold_405 137685..137800 +
EsuBft1101_3a-0001-exonagat-exon-39058Ectocarpus subulatus male Bft15bexonScaffold_405 138953..139242 +
EsuBft1101_3a-0001-exonEsuBft1101_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_405 139595..139657 +
EsuBft1101_3a-0001-exonagat-exon-39060Ectocarpus subulatus male Bft15bexonScaffold_405 140223..140372 +
EsuBft1101_3a-0001-exonagat-exon-39057Ectocarpus subulatus male Bft15bexonScaffold_405 140802..140906 +
EsuBft1101_3a-0001-exonagat-exon-39056Ectocarpus subulatus male Bft15bexonScaffold_405 141124..142433 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1101_3a-0001-exonagat-five_prime_utr-617Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_405 137685..137760 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1101_3a-0001-cdsEsuBft1101_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_405 137761..137800 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1101_3a-0001-exonagat-three_prime_utr-976Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_405 141238..142433 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1101_3a-0001 ID=EsuBft1101_3a-0001|Name=EsuBft1101_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2034bp|location=Sequence derived from alignment at Scaffold_405:137685..142433+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCCTTTCTCCCTCCACCTACTCCCCACCTCCTTCCTCCTGGAGTTGCGTG
TGCTACTTCCGCCCTTCATTGCAATCATGGTCCGAAACTTGCTCAGGCTC
TTGTTACTGGCTCCAGGAGGGGTTGTTTCATGGATACCGGCGTTGTCCGC
TCATCCGGCAGTCACCACCACCACGATGCGCGCGGTTGGCTGTTCCTCGC
CTCAGCATGGTCCACGCTCTGCCCCCCTCGCCAGCAGCAGCAGCAGCAGC
AGCAGGAGCGAGGTTCTGAGGGAGCTGGGGCGTTATGCGGCAGGGGCTGG
GGTCCTTTCCCTGGCCGGGGCGTGCGGAAGCCCCCTCCCAGCGCTCGCAG
ACAATGCTTTGGCGGCTACGAAGAAATCGTACTTCCGCTACGTGCCTCGC
ATCTTGGACGCCATGGCGTGGTACGAGGGAGACCTTCAGCAGGCCATCGC
TGAGGAAGACTGGCCAAAGGTGCTGGCGTACTTCGAGGTCGTAAACACCG
CTAGGAGCGACTCGTCTCGGCCTGCCATGTACCAATCCTCCTCGAGCCGC
ATGCAGAGGGAGCTCTTCAGCCCGCTCTCGGTGTGGGCGCAGTCGATGAG
CATCAAGGGGACCGGGCAACTCCGGGCATTGTTGTCCCAGGAGGAGAAGT
TGGAGCAAGCTATGGCCAGTCTTGAGAAAGCGGCCAGCGGGAAGGGACTG
AAGGAAGGGGAGAGCCAAGGCCAGGCGGCAATAGCTGCGTGGGAGGCGGG
AAGAGACGCGCTTCAGGAGTATGTGGAAGTCGCGAACAAGGGGATGGTTC
GCTCGTTGAGGAAGATCGACACACCGTTTTCGACGTAAATAGTACGGGTT
GAGAACCCTCCTTCATCTGCGGTCGGAGAAAGGGACGTTGCACGGACCCA
GCCAGCAAAAGTAGCCAACCTGGCAACCAGATGAATCTTGCAGCCTACAG
TCGAGTTGTATGTCGGCCTGATCTGGCCCTTGTCCTCTTGCTGAAGGTTG
CTAGCCTTTTTTTGTTGTTGGCCGCAAAGCGCGCCGCATCTTCGGGACTT
TGGTGGGGGAGAAGCTGAGGCCAAGCCTTTCAAGAGGTTGTTGCTTGAAC
CTTTGGGGACCCTGTCTTGTCGATGTTGGGTTGCCCGGAAGGGGAAACGA
AGATCAGGTACCCTCACTCAAAGGACGGTGCTTTTGTGGCCTAATTTGGC
GCGTGTGTCCGTCACGTCCTACTGCCATATGGTGTGCGTACCTTCTCGCG
TGGACCTTTTGGCGATTGCTTTCATGGTAGGGCCCAAATCCTGTCCCGGA
ATATTTCGTTTGTACCAGCATAGTTCTCATCGCGCAAGGAGGTAAGAAAA
CTTTGTTGCAGGTCTTCGTGGCCTACATTCTAGATAAATTACAACAGCAA
TTTCCCGCCTTGAAATTTAGTGCTTTGAAGAAGCAGGCTCGATAGCAATA
AAGCAGGACCCTGTGGCTTGGCCCACTTTTTGACCCTCCTCGATGACTTT
CTCGAGGCTGTAGTTGCTTCGCTTCCTCTGCGAGCTGGGCATCAAGCATG
GTGCACCGCCCCAGGATGTGTTGTGCATTACTAGAATCAAGACTCGTGTT
CTTACCTACGGAGATATTTATCTCCATGTGGCGGCGCCCCCCGGAGCAAG
TGCTTTTTCCGCTGCCAGGTGCTCCTTTGACGTGGTCGGTGTCAGTCGCC
GGGAGGAGCTCAAAGGGATGTGTGTAACAGGAACAGTGCTGTTTGTGCTC
CTTCTTGCGGGTGGTCTTGAGCCAATCGGGCCTCGTGGGCGGTGCATGTC
AGGTGTTCCGCCGGCTTCAGCCCGTCGCATTTCTTGGTAGGGAAGGATGA
CATGTGGGCGTATTAACGTACCACGTGAAAAGAGTGGAAGCTCGGTATGA
CTTGTTCTTGTCTTCGGTGGCCGGGGAAGAAGTGTGTGAGCGGGACTGCT
CGTACCGGGGGGCAATAGAAGGACTCGTTTGCTCGGCTACACAGAGAGGG
GGGCCGTTGGTCATCGCCATTCGACAGTCGAAAC
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protein sequence of EsuBft1101_3a-0001

>EsuBft1101_3 ID=EsuBft1101_3|Name=EsuBft1101_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=253bp
MVRNLLRLLLLAPGGVVSWIPALSAHPAVTTTTMRAVGCSSPQHGPRSAP
LASSSSSSSRSEVLRELGRYAAGAGVLSLAGACGSPLPALADNALAATKK
SYFRYVPRILDAMAWYEGDLQQAIAEEDWPKVLAYFEVVNTARSDSSRPA
MYQSSSSRMQRELFSPLSVWAQSMSIKGTGQLRALLSQEEKLEQAMASLE
KAASGKGLKEGESQGQAAIAAWEAGRDALQEYVEVANKGMVRSLRKIDTP
FST
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mRNA from alignment at Scaffold_405:137685..142433+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1101_3a-0001 ID=EsuBft1101_3a-0001|Name=EsuBft1101_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4749bp|location=Sequence derived from alignment at Scaffold_405:137685..142433+ (Ectocarpus subulatus male Bft15b)
TCCTTTCTCCCTCCACCTACTCCCCACCTCCTTCCTCCTGGAGTTGCGTG
TGCTACTTCCGCCCTTCATTGCAATCATGGTCCGAAACTTGCTCAGGCTC
TTGTTACTGGCTCCAGGTTTGAGAAGCCACTGTTTGTCTTCACAACCAGT
TCACAGCAGATAGACGCTCTGTCTGGGGCGCAGCACATTGGTTGCTACTT
CAAACCTCGAACCCTGCTTGTGTTCGGTGTGTATCGGCGTTCCTTCAAGC
AATGTGGATGACCACAGACATTCACAAAAATTATGAAAGCTTCGACTTTG
TGTCGGCGTGGTCTTATACCCCGTCGCGCAAGTCGCTTGCGTGCCTGGCA
GTACAAGCCGGGCCAGGCGAAAAGCTCACTTTCGTTCGTTTGCGTCTCAT
TCCGTAGTTTCCACGAATTTGGACTTGAAATTTTTTTGGCTGCTCTTATG
AGACAGCAGTATGGGAAGCGCAGGTGCCAGAATTGTTCGAATCTGAGTTG
ATTGAGGTACTAAACCATCAGTTGGCGGCGTGGGGGGGAATACTTCCGGT
ACTGAAATCAGCATAAAAAAAGTTACACCAAATAAGCTGAAACTTGTGTG
CACTTACCTGGGAGCAGTGCGAGAAAAATGATGATTGGTACCAGCAATTG
GTACCAGGGCTCAAATCATCTTCTACCAAGAGATATGGCCTCGTACAGAA
TCCGACACAACACCCAAGATAGCCAAGGAAATGTGAGGTTATCGCAAGTA
CATCACGACTTTTACGAGTTGGAATCTGAAGTTTTGACATGTGGTTGGTA
TTAGTACAACCAAGACCTTGACTGGGAGCACCCTTTTTTTTTTTTCACGA
GGTAGCCCTATTATAGGACAAATGGTGATCCTTTTTTTGTGTATAGGGGG
GCTAAAAAAGAAAAGAGTGCTTCCAGTCAAGGTCTTGGTTGTACTAATAC
CGACCACATGACAAAATTTCAGGTTATAATTCGTAGAAATCGTGGTGTAA
ATCGTTTCAACCATTTTGCATGCAACTTGGCTGGCCCAGCTTGTATTGGT
TAGCTGCCAGCTGTAGCAAGGAGTAGGAGTGCCAACGACAGACAGTCTGT
GATGTGATAGACACCGAAGGTCGTCCGGTGTGTACAAGAATACCCGCTCC
AACGCGGCGTCCAACGTGCGTAGCCTTTTAGCATTATGTTCAAGGTGTTG
CCTTTCAGAAGCCAGCAAATTCACTGACTATCATGATTGTGACATGGACC
CCGACCTATTTTCGGCAGGAGGGGTTGTTTCATGGATACCGGCGTTGTCC
GCTCATCCGGCAGTCACCACCACCACGATGCGCGCGGTTGGCTGTTCCTC
GCCTCAGCATGGTCCACGCTCTGCCCCCCTCGCCAGCAGCAGCAGCAGCA
GCAGCAGGAGCGAGGTTCTGAGGGAGCTGGGGCGTTATGCGGCAGGGGCT
GGGGTCCTTTCCCTGGCCGGGGCGTGCGGAAGCCCCCTCCCAGCGCTCGC
AGACAATGCTTTGGCGGCTACGAAGAAATCGTACTTCCGCTACGTGCCTC
GCATCTTGGTGGGTGAATGACACCTACCTTTAGGAGTACTTCCAGTATCA
ACTCTCCGTGAGCGATTGAAACCGCTGCTTGTTTGGATTCCCTGCATTGG
ACTACGTATGGGCGCACGGATCACACAGAGTGCTCGATGATGCCTGTATC
GTACTGCTGTGCTTTTTTGGTGGTTTTCCGCGCGTCTTGTGCGCGCGCCC
CAAGCAGAACGTGTCCCCCCTGCCGCCCCCCTACTGGTGTTGTCCTTCCT
TGTCCCTGTGAACGGGGACGCCCATCTGTGCGGTTTGCATCAGGGCGACA
CCTCCACAGCGTCTTTCTATCATCACAACGCCAGCGCCGTTGCTACCTTT
TCGTGTTTAGGACGCCATGGCGTGGTACGAGGGAGACCTTCAGCAGGCCA
TCGCTGAGGAAGACTGGCCAAAGGTATACGGGGCGTGCCCGCCTTGGGTC
GCTTTTGTGTAGCCTGCCTGGATTGTTCTGCGACTTCCTTTGGCGGGGTC
TTCGTTCAGCTGGACAACATGTGTGCAACCTATCCGTGTCAGACAACGGC
CTGGTCGCGTTCGTGTTGCCGGTCGATTCCAGAGACCTAGTACAACCCTG
CATTCCCGCTTTTCTTCCTACACATCTTGCCACCACGGAGAGATGTTGCT
TGCACCACTCCAGACGAGTGCTCATGCCCTTCATCACACGCTCACCACGG
CCCCATCCCGGGGCCTTCAATGCCATTTTGAGGCGCTAATATGTTCCCGC
GAAGTCTGTGACATGCCTGAGATGTGCGCGCCACGCTTCAGCTTGTTTGT
TCACCTATCAGCAACAAAGTGTTGCATTTTTGACATTCGCCATTAGGTAT
TTTTTTGCTTCTTTGAGTGTTGTAGCTGTTTCACGCCCCATGGAACAGCT
TCCTTTCTGTGTCATTTGCCGAGATCGCTGCACTTGTTTCATGTTCCCAT
GTACTAACCACCGCGTGGTTCGATTCATGATTCGACAGGTGCTGGCGTAC
TTCGAGGTCGTAAACACCGCTAGGAGCGACTCGTCTCGGCCTGCCATGTA
CCAATCCTCCTCGAGCCGCATGCAGAGGGAGCTCTTCAGCCCGCTCTCGG
TGTGGGCGCAGTCGATGAGCATCAAGGGGACCGGGCAAGTCGGAATGGAT
CATTGTTTTGCTATCGCGCTACGCACCTGTCCCCACCGATGGGATACCGC
TGTGTTGCGAATACGATTTTAACACGGTAGCACCACAGTCGCTCGCTCCC
CGTACTCTTACGTTTGCGAGTTGTGCGCGAAGGAGGGGAAGATTTTGGGA
CAAGTGTGGTAGGTTTGCCATTGTAGCATTGTTACGCTTCCTCTCTTTAC
GCTCACTCCAGTCGGTCGTCTAACCTGGAACGCCGTCGCGCATTAGGGCC
CTAGAATGCAAAGGATAGACACGACTCATCAATTTTGTTTTGCTTGTATG
ATGGACGCACTTCTTCAACCCCTCCTCCCCCTATTTCTTCCGTAACCTAA
CGTAACAGCCTCGCCCCTCCCTCGACTATGAACAACGCTTTGTTACGGTA
CCACTACCAGAGCCAAGCTCCGGGCATTGTTGTCCCAGGAGGAGAAGTTG
GAGCAAGCTATGGCCAGTCTTGAGAAAGCGGCCAGCGGGAAGGGACTGAA
GGAAGGGGAGAGCCAAGGCCAGGTGGGTATGAGAGAGATTCTAGTGACTA
CGTGGGGATAGGTGCCGGTAATAGACCGTTTGTCTCTCGACTTCAACCGC
TGTCTTACGTCGGACAGTGTTTATTCCAGGGTCGCCTCCTAATGTGCCCT
GCCGATGCCGTCTTATATTGTCCGCCTCGCGCGATTATTCCGTCCTGCCT
CCCCAACAAACGAAAACGGCCCCGAAAATGAACATGAAGGCGGCAATAGC
TGCGTGGGAGGCGGGAAGAGACGCGCTTCAGGAGTATGTGGAAGTCGCGA
ACAAGGGGATGGTTCGCTCGTTGAGGAAGATCGACACACCGTTTTCGACG
TAAATAGTACGGGTTGAGAACCCTCCTTCATCTGCGGTCGGAGAAAGGGA
CGTTGCACGGACCCAGCCAGCAAAAGTAGCCAACCTGGCAACCAGATGAA
TCTTGCAGCCTACAGTCGAGTTGTATGTCGGCCTGATCTGGCCCTTGTCC
TCTTGCTGAAGGTTGCTAGCCTTTTTTTGTTGTTGGCCGCAAAGCGCGCC
GCATCTTCGGGACTTTGGTGGGGGAGAAGCTGAGGCCAAGCCTTTCAAGA
GGTTGTTGCTTGAACCTTTGGGGACCCTGTCTTGTCGATGTTGGGTTGCC
CGGAAGGGGAAACGAAGATCAGGTACCCTCACTCAAAGGACGGTGCTTTT
GTGGCCTAATTTGGCGCGTGTGTCCGTCACGTCCTACTGCCATATGGTGT
GCGTACCTTCTCGCGTGGACCTTTTGGCGATTGCTTTCATGGTAGGGCCC
AAATCCTGTCCCGGAATATTTCGTTTGTACCAGCATAGTTCTCATCGCGC
AAGGAGGTAAGAAAACTTTGTTGCAGGTCTTCGTGGCCTACATTCTAGAT
AAATTACAACAGCAATTTCCCGCCTTGAAATTTAGTGCTTTGAAGAAGCA
GGCTCGATAGCAATAAAGCAGGACCCTGTGGCTTGGCCCACTTTTTGACC
CTCCTCGATGACTTTCTCGAGGCTGTAGTTGCTTCGCTTCCTCTGCGAGC
TGGGCATCAAGCATGGTGCACCGCCCCAGGATGTGTTGTGCATTACTAGA
ATCAAGACTCGTGTTCTTACCTACGGAGATATTTATCTCCATGTGGCGGC
GCCCCCCGGAGCAAGTGCTTTTTCCGCTGCCAGGTGCTCCTTTGACGTGG
TCGGTGTCAGTCGCCGGGAGGAGCTCAAAGGGATGTGTGTAACAGGAACA
GTGCTGTTTGTGCTCCTTCTTGCGGGTGGTCTTGAGCCAATCGGGCCTCG
TGGGCGGTGCATGTCAGGTGTTCCGCCGGCTTCAGCCCGTCGCATTTCTT
GGTAGGGAAGGATGACATGTGGGCGTATTAACGTACCACGTGAAAAGAGT
GGAAGCTCGGTATGACTTGTTCTTGTCTTCGGTGGCCGGGGAAGAAGTGT
GTGAGCGGGACTGCTCGTACCGGGGGGCAATAGAAGGACTCGTTTGCTCG
GCTACACAGAGAGGGGGGCCGTTGGTCATCGCCATTCGACAGTCGAAAC
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Coding sequence (CDS) from alignment at Scaffold_405:137685..142433+

>EsuBft1101_3a-0001 ID=EsuBft1101_3a-0001|Name=EsuBft1101_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=762bp|location=Sequence derived from alignment at Scaffold_405:137685..142433+ (Ectocarpus subulatus male Bft15b)
ATGGTCCGAAACTTGCTCAGGCTCTTGTTACTGGCTCCAGGAGGGGTTGT
TTCATGGATACCGGCGTTGTCCGCTCATCCGGCAGTCACCACCACCACGA
TGCGCGCGGTTGGCTGTTCCTCGCCTCAGCATGGTCCACGCTCTGCCCCC
CTCGCCAGCAGCAGCAGCAGCAGCAGCAGGAGCGAGGTTCTGAGGGAGCT
GGGGCGTTATGCGGCAGGGGCTGGGGTCCTTTCCCTGGCCGGGGCGTGCG
GAAGCCCCCTCCCAGCGCTCGCAGACAATGCTTTGGCGGCTACGAAGAAA
TCGTACTTCCGCTACGTGCCTCGCATCTTGGACGCCATGGCGTGGTACGA
GGGAGACCTTCAGCAGGCCATCGCTGAGGAAGACTGGCCAAAGGTGCTGG
CGTACTTCGAGGTCGTAAACACCGCTAGGAGCGACTCGTCTCGGCCTGCC
ATGTACCAATCCTCCTCGAGCCGCATGCAGAGGGAGCTCTTCAGCCCGCT
CTCGGTGTGGGCGCAGTCGATGAGCATCAAGGGGACCGGGCAACTCCGGG
CATTGTTGTCCCAGGAGGAGAAGTTGGAGCAAGCTATGGCCAGTCTTGAG
AAAGCGGCCAGCGGGAAGGGACTGAAGGAAGGGGAGAGCCAAGGCCAGGC
GGCAATAGCTGCGTGGGAGGCGGGAAGAGACGCGCTTCAGGAGTATGTGG
AAGTCGCGAACAAGGGGATGGTTCGCTCGTTGAGGAAGATCGACACACCG
TTTTCGACGTAA
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