EsuBft1099_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1099_8a-0001
Unique NameEsuBft1099_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_365contigScaffold_365:193877..196079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005092035.1
ProteomeIdEsuBft1099_8
Protein domainsPTHR19446
Protein domainsSSF56672
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteline-1 retrotransposable element orf2 protein os:homo sapiens pe:1 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl33208|Metazoa
Length1603
Hectar predicted targeting categoryother localisation
Evalue5.3e-44
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRibonuclease H protein
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0016779
GO0006278
GO0004519
GO0032197
GO0090305
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_8aEsuBft1099_8aEctocarpus subulatus male Bft15bgeneScaffold_365 193877..196079 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_8a-0001EsuBft1099_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_365 193878..196079 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_8a-0001-exonagat-exon-47601Ectocarpus subulatus male Bft15bexonScaffold_365 193877..194530 +
EsuBft1099_8a-0001-exonEsuBft1099_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_365 194716..195257 +
EsuBft1099_8a-0001-exonagat-exon-47599Ectocarpus subulatus male Bft15bexonScaffold_365 195537..195686 +
EsuBft1099_8a-0001-exonagat-exon-47600Ectocarpus subulatus male Bft15bexonScaffold_365 195823..196079 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_8a-0001-exonagat-five_prime_utr-609Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_365 193877..193877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1099_8a-0001-cdsEsuBft1099_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_365 193878..194530 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1099_8a-0001 ID=EsuBft1099_8a-0001|Name=EsuBft1099_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1603bp|location=Sequence derived from alignment at Scaffold_365:193877..196079+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GATGCTGTACAAGAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGA
TTTCGCTACTATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCAAT
CGTCTAAGAGCCTTCTGCGAAGCCAACAACATCCTCCCGGCGGAAAAGTG
CGGATTTCGACCCGGGCGATCCACCGTCGACATGCTGTTGGTCGTACGCC
GCCTCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCCCTACATGTACTTC
GTCGACTTGACGAAGGCGTATGATTTGGTGGACCGAGAGATGCTTTGGAA
GGTGCTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCAAAGTCATCCGCC
AATTCCACGATGGAATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTA
TTGGACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGATGTGTGCTTTC
TCCACTGCTGTTGAACATCTTGTTTGCCGAGGTCCTCGAGGTCGTTGTCA
TCCGATTCAGCGAGGATGATGTTGTTCTGCCGAGCCTGGTGTGCTTGGAG
GAGGGGAAGACAGAAGCCCGCGGGGGGGAAGAGACACCCCTTGACCGAGT
TCAGAGCGCAGTATGGGGGATGCTGTACGCCGATGATGCCGGCGACGTAT
CGAGACCGAAAGCGCCATTCCGACTCAAGATCCGCCTTCTCCAGGCGGGG
GTGATGGAGGCACTGCTGTATGGCTGCATGACATCGTCACCACTCGGCGG
CCACTATCAGACGCTGCGGTCGATACACCACCAACTGCTCCTTCGAGTTA
TCGGGTACAAGCGCAAGAAAGACACCTACCGGCAGCTCTCTTACGCCCAG
GCGCCAAAGAGGGTCGAATGCCAGAGCGTTGAAGCCACGATCCGACAACG
AAGCCAACTTTTCGCGGGAGCATTGACAAGGCAGCCGGACGGGCGACTCC
CGAAACGACTGATGCTCGGCGAGCTGGCGGGGGGGAAGAATCGACGTAGA
AGGGGACAAGAACAGAACTGGCCGAAGTGTGGGTTTGACGACCTGAAGGC
ATTCGGGGCCGACTACGGATCTACGAAAACCGATCCATGCTGTCTCGGAA
TCCCGGTACCGACAGACACGGCACCGAAGTTAAAATGGACGGAAGCCGCG
AAGGTTGAGGGGGGAGTACCCTGGCGGTGCTGCAGGGAGCTGAGAGGGGT
CCCACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACG
ATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAAGAGTAGGGGAC
ACGGAAACTTCAGTGTCAGGAATGCTGTTTGCGGATGATTTTGTCGAACA
TAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGTACACAT
ACCTCGGAGTAGAGATCGTAAAAGACTGCTCGTGGAATGCACACATGTGC
AAGGTAGCGGAGAAGGGCAAAGCGCGAGCAGGGAAGCTGCACCCAATACT
CGCAAACCGGCACCTCGATACACGCATCAAATTGACGGTTTTGAAGAGCG
TAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGGAAATANN
NNN
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protein sequence of EsuBft1099_8a-0001

>EsuBft1099_8 ID=EsuBft1099_8|Name=EsuBft1099_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=534bp
MLYKKGDRSNCNNYRGISLLSHVGKVPIKIITNRLRAFCEANNILPAEKC
GFRPGRSTVDMLLVVRRLQELGRRKKIPPYMYFVDLTKAYDLVDREMLWK
VLARAGIPAKLIKVIRQFHDGMRARVRMDDGELLDWFFVTQGVRQGCVLS
PLLLNILFAEVLEVVVIRFSEDDVVLPSLVCLEEGKTEARGGEETPLDRV
QSAVWGMLYADDAGDVSRPKAPFRLKIRLLQAGVMEALLYGCMTSSPLGG
HYQTLRSIHHQLLLRVIGYKRKKDTYRQLSYAQAPKRVECQSVEATIRQR
SQLFAGALTRQPDGRLPKRLMLGELAGGKNRRRRGQEQNWPKCGFDDLKA
FGADYGSTKTDPCCLGIPVPTDTAPKLKWTEAAKVEGGVPWRCCRELRGV
PQGCTLSPTLFQVFINDLLEVVEAVRKGVRVGDTETSVSGMLFADDFVEH
RWKWGIEEIAVVDQYTYLGVEIVKDCSWNAHMCKVAEKGKARAGKLHPIL
ANRHLDTRIKLTVLKSVIVPPLEYAGEVWEGNXX
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mRNA from alignment at Scaffold_365:193877..196079+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1099_8a-0001 ID=EsuBft1099_8a-0001|Name=EsuBft1099_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2203bp|location=Sequence derived from alignment at Scaffold_365:193877..196079+ (Ectocarpus subulatus male Bft15b)
GATGCTGTACAAGAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGA
TTTCGCTACTATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCAAT
CGTCTAAGAGCCTTCTGCGAAGCCAACAACATCCTCCCGGCGGAAAAGTG
CGGATTTCGACCCGGGCGATCCACCGTCGACATGCTGTTGGTCGTACGCC
GCCTCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCCCTACATGTACTTC
GTCGACTTGACGAAGGCGTATGATTTGGTGGACCGAGAGATGCTTTGGAA
GGTGCTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCAAAGTCATCCGCC
AATTCCACGATGGAATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTA
TTGGACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGATGTGTGCTTTC
TCCACTGCTGTTGAACATCTTGTTTGCCGAGGTCCTCGAGGTCGTTGTCA
TCCGATTCAGCGAGGATGATGTTGTTCTGCCGAGCCTGGTGTGCTTGGAG
GAGGGGAAGACAGAAGCCCGCGGGGGGGAAGAGACACCCCTTGACCGAGT
TCAGAGCGCAGTATGGGGGATGCTGTACGCCGATGATGCCGGCGACGTAT
CGAGGTCTGCAGAAGGACTGGCGAGAATGATGACCATCATCGTTGAGGTG
TTCGGGGAGTTCGGGCTAACGGTGTCGGAGAAGAAGACGGACACGCTCCT
GATGCGCGCGAAGGACAAGCCGACTTCAACATCACAGCCCCCCCCCGCCT
CCACCGCTGACCATCGAAGCCGNGGGAGCTCTTCGACAGACCGAAAGCGC
CATTCCGACTCAAGATCCGCCTTCTCCAGGCGGGGGTGATGGAGGCACTG
CTGTATGGCTGCATGACATCGTCACCACTCGGCGGCCACTATCAGACGCT
GCGGTCGATACACCACCAACTGCTCCTTCGAGTTATCGGGTACAAGCGCA
AGAAAGACACCTACCGGCAGCTCTCTTACGCCCAGGCGCCAAAGAGGGTC
GAATGCCAGAGCGTTGAAGCCACGATCCGACAACGAAGCCAACTTTTCGC
GGGAGCATTGACAAGGCAGCCGGACGGGCGACTCCCGAAACGACTGATGC
TCGGCGAGCTGGCGGGGGGGAAGAATCGACGTAGAAGGGGACAAGAACAG
AACTGGCCGAAGTGTGGGTTTGACGACCTGAAGGCATTCGGGGCCGACTA
CGGATCTACGAAAACCGATCCATGCTGTCTCGGAATCCCGGTACCGACAG
ACACGGCACCGAAGTTAAAATGGACGGAAGCCGCGAAGGTTGAGGGGGGA
GTACCCTGGCGGTGCTGCAGGGAGCTGAGAGGTGCATGACCTGGCACTAG
AAGGAAGAAGAGGCCAGCCGACAACGGACGCTCAAACGAAACCACAACCA
ACGGCCAATGGGGCGGGAGGGGGGCAAGAGACGGACGAGGCGGCGAGGGA
AGAAAGCAAACGAGCAGAGACGAACCGAGTGGCGCGACAAGGGCCGGACT
GAATTTCTTTTAGCCAATTCCCCCTCCCAACGCTGAAGAAGATGACAGTG
TGTACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTCTAAATTCTTCAA
CATTGAGCAGGGGTCCCACAAGGTTGCACGCTGTCCCCAACATTGTTCCA
GGTGTTCATCAACGATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAG
TAAGAGTAGGGGACACGGAAACTTCAGTGTCAGGAATGCTGTTTGCGGAT
GATTTTGTCGGTATGTCGAATACCCCTGAGGGACTGCAACTGCAAATTGG
ACGCGGCGAAGGAGTTGACTGATGAGTGGAGATTGTCTGCCAACGTTCAG
AAGAGTGCCGTCATGGTATGCAACGAGAACAAGGAGGAACCAGTAGAACA
TAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGTACACAT
ACCTCGGAGTAGAGATCGTAAAAGACTGCTCGTGGAATGCACACATGTGC
AAGGTAGCGGAGAAGGGCAAAGCGCGAGCAGGGAAGCTGCACCCAATACT
CGCAAACCGGCACCTCGATACACGCATCAAATTGACGGTTTTGAAGAGCG
TAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGGAAATANN
NNN
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Coding sequence (CDS) from alignment at Scaffold_365:193877..196079+

>EsuBft1099_8a-0001 ID=EsuBft1099_8a-0001|Name=EsuBft1099_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1602bp|location=Sequence derived from alignment at Scaffold_365:193877..196079+ (Ectocarpus subulatus male Bft15b)
ATGCTGTACAAGAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGAT
TTCGCTACTATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCAATC
GTCTAAGAGCCTTCTGCGAAGCCAACAACATCCTCCCGGCGGAAAAGTGC
GGATTTCGACCCGGGCGATCCACCGTCGACATGCTGTTGGTCGTACGCCG
CCTCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCCCTACATGTACTTCG
TCGACTTGACGAAGGCGTATGATTTGGTGGACCGAGAGATGCTTTGGAAG
GTGCTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCAAAGTCATCCGCCA
ATTCCACGATGGAATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTAT
TGGACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGATGTGTGCTTTCT
CCACTGCTGTTGAACATCTTGTTTGCCGAGGTCCTCGAGGTCGTTGTCAT
CCGATTCAGCGAGGATGATGTTGTTCTGCCGAGCCTGGTGTGCTTGGAGG
AGGGGAAGACAGAAGCCCGCGGGGGGGAAGAGACACCCCTTGACCGAGTT
CAGAGCGCAGTATGGGGGATGCTGTACGCCGATGATGCCGGCGACGTATC
GAGACCGAAAGCGCCATTCCGACTCAAGATCCGCCTTCTCCAGGCGGGGG
TGATGGAGGCACTGCTGTATGGCTGCATGACATCGTCACCACTCGGCGGC
CACTATCAGACGCTGCGGTCGATACACCACCAACTGCTCCTTCGAGTTAT
CGGGTACAAGCGCAAGAAAGACACCTACCGGCAGCTCTCTTACGCCCAGG
CGCCAAAGAGGGTCGAATGCCAGAGCGTTGAAGCCACGATCCGACAACGA
AGCCAACTTTTCGCGGGAGCATTGACAAGGCAGCCGGACGGGCGACTCCC
GAAACGACTGATGCTCGGCGAGCTGGCGGGGGGGAAGAATCGACGTAGAA
GGGGACAAGAACAGAACTGGCCGAAGTGTGGGTTTGACGACCTGAAGGCA
TTCGGGGCCGACTACGGATCTACGAAAACCGATCCATGCTGTCTCGGAAT
CCCGGTACCGACAGACACGGCACCGAAGTTAAAATGGACGGAAGCCGCGA
AGGTTGAGGGGGGAGTACCCTGGCGGTGCTGCAGGGAGCTGAGAGGGGTC
CCACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACGA
TCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAAGAGTAGGGGACA
CGGAAACTTCAGTGTCAGGAATGCTGTTTGCGGATGATTTTGTCGAACAT
AGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGTACACATA
CCTCGGAGTAGAGATCGTAAAAGACTGCTCGTGGAATGCACACATGTGCA
AGGTAGCGGAGAAGGGCAAAGCGCGAGCAGGGAAGCTGCACCCAATACTC
GCAAACCGGCACCTCGATACACGCATCAAATTGACGGTTTTGAAGAGCGT
AATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGGAAATANNN
NN
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